An integrated object model and method framework for subject-centric e-Research applications

Frontiers in Neuroinformatics

Volumn 3, Issue JUL, 2009, Pages

  Lohrey, Jason M ^a,b   Killeen, Neil E B ^b   Egan, Gary F ^b  

^a Arcitecta Pty Ltd   (Australia)

^b UNIVERSITY OF MELBOURNE   (Australia)

Author keywords

Collaborative research; Data repository; e Research; Experimental methods; Object model; Subject centric

Indexed keywords

EID: 78649827447     PISSN: 16625196     EISSN: None     Source Type: Journal    
DOI: 10.3389/neuro.11.019.2009     Document Type: Article

References (12)

1. Brase, J. (2004). Using digital library techniques - registration of scientific primary data. Lect. Notes Comput. Sci. 3232, 488-494. doi: 10.1007/b100389.
2. Gardner, D., Toga, A. W., Ascoli, G. A., Beatty, J. T., Brinkley, J. F., Dale, A. M., Fox, P. T., Gardner, E. P., George, J. S., Goddard, N., Harris, K. M., Herskovits, E. H., Hines, M. L., Jacobs, G. A., Jacobs, R. E., Jones, E. G., Kennedy, D. N., Kimberg, D. Y., Mazziotta, J. C., Miller, P. L., Mori, S., Mountain, D. C., Reiss, A. L., Rosen, G. D., Rottenberg, D. A., Shepherd, G. M., Smalheiser, N. R., Smith, K. P., Strachan, T., Van Essen, D. C., Williams, R. W., and Wong, S. T. (2003). Towards effective and rewarding data sharing. Neuroinformatics 1, 289-296.
3. Keator, D. B., Gadde, S., Grethe, J. S., Taylor, D. V., and Potkin, S. G. (2006). A general XML schema and SPM toolbox for storage of neuroimaging results and anatomical labels. Neuroinformatics 4, 199-212.
4. Keator, D. B., Grethe, J. S., Marcus, D., Ozyurt, B., Gadde, S., Murphy, S., Pieper, S., Greve, D., Notestine, R., Bockholt, H. J., Papadopoulos P, BIRN Function; BIRN Morphometry; and BIRN-Coordinating. (2008). A national human neuroimaging collaboratory enabled by the Biomedical Informatics Research Network (BIRN). IEEE Trans. Inf. Technol. Biomed. 12, 162-172.
5. Klump, J., Bertelmann, R., Brase, J., Diepenbroek, M., Grobe, H., Höck, H., Lautenschlager, M., Schindler, U., Sens, I., and Wächter, J. (2006). Data publication in the open access initiative. Data Sci. J. 5, 79-83.
6. Klump, J., Brase, J., Diepenbroek, M., Grobe, H., Hildenbrandt, B., Höck, H., Lautenschlager, M., and Sens, I. (2008). Use of Persistent Identifi ers in the Publication and Citation of Scientific Data. AGU Fall Meeting, 5-19 December 2008, San Francisco, CA, USA. Available at: http://epic.awi.de/epic/Main?puid=31047&lang=en
7. Marcus, D. S., Olsen, T. R., Ramaratnam, M., and Buckner, R. L. (2007). The extensible neuroimaging archive toolkit an informatics platform for managing, exploring, and sharing neuroimaging data. Neuroinformatics 5, 11-34.
8. Marenco, L., Tosches, N., Crasto, C., Shepherd, G., Miller, P. L., and Nadkarni, P. M. (2003). Achieving evolvable Web-database bioscience applications using the EAV/CR framework: recent advances. J. Am. Med. Inform. Assoc. 10:444-453.
9. Martone, M. E., Gupta, A., and Ellisman, M. H. (2004). E- neuroscience: challenges and triumphs in integrating distributed data from molecules to brains. Nat. Neurosci. 7, 467-472.
10. Smith, B., Ashburner, M., Rosse, C., Bard, J., Bug, W., Ceusters, W., Goldberg, L. J., Eilbeck, K., Ireland, A., Mungall, C. J., The OBI Consortium, Leontis, N., Rocca-Serra, P., Ruttenberg, A., Sansone S-A., Scheuermann, R. H., Shah, N., Whetzel, P. L., and Lewis, S. (2007). The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration. Nat. Biotechnol. 25, 1251-1255.
11. Toga, A. (2002). Neuroimage databases: the good, the bad and the ugly. Nat. Rev. Neurosci. 3, 302-309.
12. Wu, Q., Butzkueven, H., Gresle, M., Kirchhoff, F., Friedhuber, A., Yang, Q., Wang, H., Fang, K., Lei, H., Egan, G. F., and Kilpatrick, T. J. (2007). MR diffusion changes correlate with ultra- structurally defined axonal degeneration in murine optic nerve. Neuroimage 37, 1138-1147.