-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S F, Madden, T L, Schaffer, A A, Zhang, J, Zhang, Z, Miller, W and Lipman, D J. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucl Acids Res, 25: 3389-3402.
-
(1997)
Nucl Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
2
-
-
0034029151
-
Impact of forest tree species on feldspar weathering rates
-
Augusto, L, Turpault, M P and Ranger, J. 2000. Impact of forest tree species on feldspar weathering rates. Geoderma, 96: 215-237.
-
(2000)
Geoderma
, vol.96
, pp. 215-237
-
-
Augusto, L.1
Turpault, M.P.2
Ranger, J.3
-
3
-
-
85060997196
-
Biogeochemical weathering of silicate minerals
-
Washington, DC: Mineralogical Soc America
-
Barker, W, Welch, S and Bainfield, J. 1997. "Biogeochemical weathering of silicate minerals". In Geomicrobiology: Interactions between Microbes and Minerals, 391-428. Washington, DC: Mineralogical Soc America.
-
(1997)
Geomicrobiology: Interactions between Microbes and Minerals
, pp. 391-428
-
-
Barker, W.1
Welch, S.2
Bainfield, J.3
-
4
-
-
0035062221
-
Silicates, silicate weathering, and microbial ecology
-
Bennett, P C, Rogers, J R and Hierbert, F K. 2001. Silicates, silicate weathering, and microbial ecology. Geomicrobiol J, 18: 3-19.
-
(2001)
Geomicrobiol J
, vol.18
, pp. 3-19
-
-
Bennett, P.C.1
Rogers, J.R.2
Hierbert, F.K.3
-
5
-
-
77649090656
-
Rock weathering creates oases of life in a High Arctic desert
-
Borin, S, Ventura, S, Tambone, F, Mapelli, F, Schubotz, F, Brusetti, L, Scaglia, B, D'Acqui, L P, Solheim, B, Turicchia, S, Marasco, R, Hinrichs, K U, Baldi, F, Adani, F and Daffonchio, D. 2009. Rock weathering creates oases of life in a High Arctic desert. Environ Microbiol, 12: 293-303.
-
(2009)
Environ Microbiol
, vol.12
, pp. 293-303
-
-
Borin, S.1
Ventura, S.2
Tambone, F.3
Mapelli, F.4
Schubotz, F.5
Brusetti, L.6
Scaglia, B.7
D'Acqui, L.P.8
Solheim, B.9
Turicchia, S.10
Marasco, R.11
Hinrichs, K.U.12
Baldi, F.13
Adani, F.14
Daffonchio, D.15
-
6
-
-
33144464482
-
Root-associated bacteria contribute to mineral weathering and to mineral nutrition in trees: A budgeting analysis
-
Calvaruso, C, Turpault, M-P and Frey-Klett, P. 2006. Root-associated bacteria contribute to mineral weathering and to mineral nutrition in trees: a budgeting analysis. Appl Environ Microbiol, 72: 1258-1266.
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 1258-1266
-
-
Calvaruso, C.1
Turpault, M.-P.2
Frey-Klett, P.3
-
7
-
-
34548401254
-
Impact of ectomycorrhizosphere on the functional diversity of soil bacterial and fungal communities from a forest stand in relation to nutrient mobilization processes
-
Calvaruso, C, Turpault, M-P, Leclerc, E and Frey-Klett, P. 2007. Impact of ectomycorrhizosphere on the functional diversity of soil bacterial and fungal communities from a forest stand in relation to nutrient mobilization processes. Microbial Ecol, 54: 567-577.
-
(2007)
Microbial Ecol
, vol.54
, pp. 567-577
-
-
Calvaruso, C.1
Turpault, M.-P.2
Leclerc, E.3
Frey-Klett, P.4
-
8
-
-
34547830333
-
Altering the mineral composition of soil causes a shift in microbial community structure
-
Carson, J K, Rooney, D, Gleeson, D B and Clipson, N. 2007. Altering the mineral composition of soil causes a shift in microbial community structure. FEMS Microbiol Ecol, 61: 414-423.
-
(2007)
FEMS Microbiol Ecol
, vol.61
, pp. 414-423
-
-
Carson, J.K.1
Rooney, D.2
Gleeson, D.B.3
Clipson, N.4
-
9
-
-
59249087172
-
Minerals in soil select distinct bacterial communities in their microhabitats
-
Carson, J K, Campbell, L, Rooney, D, Clipson, N and Gleeson, D B. 2009. Minerals in soil select distinct bacterial communities in their microhabitats. FEMS Microbiol Ecol, 67: 381-388.
-
(2009)
FEMS Microbiol Ecol
, vol.67
, pp. 381-388
-
-
Carson, J.K.1
Campbell, L.2
Rooney, D.3
Clipson, N.4
Gleeson, D.B.5
-
10
-
-
2942702380
-
Rock fragments in soil support a different microbial community from the fine earth
-
Certini, G, Campbell, C D and Edwards, A C. 2004. Rock fragments in soil support a different microbial community from the fine earth. Soil Biol Biochem, 36: 1119-1128.
-
(2004)
Soil Biol Biochem
, vol.36
, pp. 1119-1128
-
-
Certini, G.1
Campbell, C.D.2
Edwards, A.C.3
-
11
-
-
60049085835
-
Alteration textures in the terrestrial volcanic glass and the associated bacterial community
-
Cockell, C S, Olsson-Francis, K, Herrera, A and Meunier, A. 2009. Alteration textures in the terrestrial volcanic glass and the associated bacterial community. Geobiol, 7: 50-65.
-
(2009)
Geobiol
, vol.7
, pp. 50-65
-
-
Cockell, C.S.1
Olsson-Francis, K.2
Herrera, A.3
Meunier, A.4
-
12
-
-
0002119016
-
Phenomena of bacterial adhesion
-
In: Savage D C, Fletcher M, editors London: Plenum
-
Costerton, J W, Marie, T J and Cheng, K J. 1985. "Phenomena of bacterial adhesion". In Bacterial Adhesion, Edited by: Savage, D C and Fletcher, M. 3-43. London: Plenum.
-
(1985)
Bacterial Adhesion
, pp. 3-43
-
-
Costerton, J.W.1
Marie, T.J.2
Cheng, K.J.3
-
13
-
-
0024444791
-
Isolation and direct complete nucleotide determination of entire genes. Characterization of a gene coding for 16S ribosomal RNA
-
Edwards, U, Rogall, T, Blocker, H, Emde, M and Bottger, E C. 1989. Isolation and direct complete nucleotide determination of entire genes. Characterization of a gene coding for 16S ribosomal RNA. Nucl Acids Res, 17: 7843-7853.
-
(1989)
Nucl Acids Res
, vol.17
, pp. 7843-7853
-
-
Edwards, U.1
Rogall, T.2
Blocker, H.3
Emde, M.4
Bottger, E.C.5
-
14
-
-
11144260081
-
Ectomycorrhizal symbiosis affects functional diversity of rhizosphere fluorescent pseudomonads
-
Frey-Klett, P, Chavatte, M, Clausse, M-L, Courrier, S, Le Roux, C, Raaijmakers, J, Martinotti, M G, Pierrat, J-C and Garbaye, J. 2005. Ectomycorrhizal symbiosis affects functional diversity of rhizosphere fluorescent pseudomonads. New Phytol, 165: 317-328.
-
(2005)
New Phytol
, vol.165
, pp. 317-328
-
-
Frey-Klett, P.1
Chavatte, M.2
Clausse, M.-L.3
Courrier, S.4
Le Roux, C.5
Raaijmakers, J.6
Martinotti, M.G.7
Pierrat, J.-C.8
Garbaye, J.9
-
15
-
-
77749261551
-
Metals, minerals and microbes: Geomicrobiology and bioremediation
-
Gadd, GM. 2010. Metals, minerals and microbes: geomicrobiology and bioremediation. Microbiology, 156: 609-643.
-
(2010)
Microbiology
, vol.156
, pp. 609-643
-
-
Gadd, G.M.1
-
16
-
-
33745486531
-
Characterization of bacterial community structure on a weathered pegmatitic granite
-
Gleeson, D B, Kennedy, N M, Clipson, N, Melville, K, Gadd, G M and McDermott, F P. 2006. Characterization of bacterial community structure on a weathered pegmatitic granite. Microb Ecol, 51: 526-534.
-
(2006)
Microb Ecol
, vol.51
, pp. 526-534
-
-
Gleeson, D.B.1
Kennedy, N.M.2
Clipson, N.3
Melville, K.4
Gadd, G.M.5
McDermott, F.P.6
-
17
-
-
34250206964
-
Life on the rocks
-
Gorbushina, AA. 2007. Life on the rocks. Environ Microbiol, 9: 1613-1631.
-
(2007)
Environ Microbiol
, vol.9
, pp. 1613-1631
-
-
Gorbushina, A.A.1
-
18
-
-
38849182335
-
Bacterial colonization and weathering of terrestrial obsidian in Iceland
-
Herrera, A, Cockell, C S, Self, S, Blaxter, M, Reitner, J, Arp, G, Dröse, W, Thorsteinsson, T and Tindle, A G. 2008. Bacterial colonization and weathering of terrestrial obsidian in Iceland. Geomicrobiol J, 25: 25-37.
-
(2008)
Geomicrobiol J
, vol.25
, pp. 25-37
-
-
Herrera, A.1
Cockell, C.S.2
Self, S.3
Blaxter, M.4
Reitner, J.5
Arp, G.6
Dröse, W.7
Thorsteinsson, T.8
Tindle, A.G.9
-
19
-
-
77954862531
-
Microbial selectivity on mineral surfaces: Possible implications for weathering processes
-
Hutchens, E. 2009. Microbial selectivity on mineral surfaces: possible implications for weathering processes. Fungal Biol Rev, doi:doi:10.1016/ j.fbr.2009.10.002
-
(2009)
Fungal Biol Rev
-
-
Hutchens, E.1
-
20
-
-
74349112835
-
Meter-scale diversity of microbial communities on a weathered pegmatite granite outcrop in the wicklow mountains, Ireland: Evidence for mineral induced selection?
-
Hutchens, E, Gleeson, D, McDermott, F, Miranda-CasolLuengo, R and Clipson, N. 2010. Meter-scale diversity of microbial communities on a weathered pegmatite granite outcrop in the wicklow mountains, Ireland: evidence for mineral induced selection?. Geomicrobiol J, 27: 1-14.
-
(2010)
Geomicrobiol J
, vol.27
, pp. 1-14
-
-
Hutchens, E.1
Gleeson, D.2
McDermott, F.3
Miranda-Casolluengo, R.4
Clipson, N.5
-
21
-
-
0344629203
-
Bias and artifacts in multitemplate polymerase chain reactions PCR
-
Kanagawa, T. 2003. Bias and artifacts in multitemplate polymerase chain reactions PCR. J Biosci Eng, 96: 317-323.
-
(2003)
J Biosci Eng
, vol.96
, pp. 317-323
-
-
Kanagawa, T.1
-
22
-
-
0001857117
-
16S/23S rRNA sequencing
-
In: Stackebrandt E, Goodfellow M, editors Chichester, United Kingdom: John Wiley and Sons
-
Lane, DJ. 1991. "16S/23S rRNA sequencing, p. 115-176". In Nucleic acid techniques in bacterial systematics, Edited by: Stackebrandt, E and Goodfellow, M. Chichester, United Kingdom: John Wiley and Sons.
-
(1991)
Nucleic acid techniques in bacterial systematics
, pp. 115-176
-
-
Lane, D.J.1
-
23
-
-
77649088016
-
The bacterial genus Collimonas: Mycophagy, weathering and other adaptive solutions to life in oligotrophic soil environments
-
Leveau, J HJ, Uroz, S and de Boer, W. 2009. The bacterial genus Collimonas: mycophagy, weathering and other adaptive solutions to life in oligotrophic soil environments. Environ Microbiol, 12: 281-292.
-
(2009)
Environ Microbiol
, vol.12
, pp. 281-292
-
-
Leveau, J.H.J.1
Uroz, S.2
de Boer, W.3
-
24
-
-
64749092472
-
Microbial mineral weathering for nutrient acquisition releases arsenic
-
Mailloux, B J, Alexandrova, E, Keimowitz, A R, Wovkulich, K, Freyer, G A, Herron, M, Stolz, J F, Kenna, T C, Pichler, T, Polizzotto, M L, Dong, H, Bishop, M and Knappett, P. 2009. Microbial mineral weathering for nutrient acquisition releases arsenic. Appl Environ Microbiol, 75: 2558-2565.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 2558-2565
-
-
Mailloux, B.J.1
Alexandrova, E.2
Keimowitz, A.R.3
Wovkulich, K.4
Freyer, G.A.5
Herron, M.6
Stolz, J.F.7
Kenna, T.C.8
Pichler, T.9
Polizzotto, M.L.10
Dong, H.11
Bishop, M.12
Knappett, P.13
-
25
-
-
34548401170
-
The phylogeny of endolithic microbes associated with marine basalts
-
Mason, O, Stingl, U, Wilhelm, L, Moeseneder, M, Di Meo- Savoie, C, Fisk, M and Giovannoni, S. 2007. The phylogeny of endolithic microbes associated with marine basalts. Environ Microbiol, 9: 2539-2550.
-
(2007)
Environ Microbiol
, vol.9
, pp. 2539-2550
-
-
Mason, O.1
Stingl, U.2
Wilhelm, L.3
Moeseneder, M.4
Di Meo-Savoie, C.5
Fisk, M.6
Giovannoni, S.7
-
26
-
-
58549119329
-
Prokariotic diversity, distribution, and insights into their role in biogeochemical cycling in marine basalts
-
Mason, O, Di Meo-Savoie, C, Van Nostrand, J D, Zhou, J, Fisk, M R and Giovannoni, S. 2009. Prokariotic diversity, distribution, and insights into their role in biogeochemical cycling in marine basalts. ISME J, 3: 231-242.
-
(2009)
ISME J
, vol.3
, pp. 231-242
-
-
Mason, O.1
Di Meo-Savoie, C.2
van Nostrand, J.D.3
Zhou, J.4
Fisk, M.R.5
Giovannoni, S.6
-
27
-
-
79955047448
-
Effet des substitutions d'essences forestières sur l'évolution des sols et de leur mineralogy
-
PhD Thesis, Université Nancy
-
Mareschal, L. 2008. "Effet des substitutions d'essences forestières sur l'évolution des sols et de leur mineralogy". PhD Thesis, Université Nancy.
-
(2008)
-
-
Mareschal, L.1
-
28
-
-
32244436723
-
Epilithic and endolithic bacterial communities in limestone from a Maya archaeological site
-
McNamara, C J, Perry, TD IV, Bearce, K A, Hernandez-Duque, G and Mitchell, R. 2006. Epilithic and endolithic bacterial communities in limestone from a Maya archaeological site. Microbial Ecol, 51: 51-64.
-
(2006)
Microbial Ecol
, vol.51
, pp. 51-64
-
-
McNamara, C.J.1
Perry, T.D.2
Bearce, K.A.3
Hernandez-Duque, G.4
Mitchell, R.5
-
29
-
-
34249898400
-
Correspondence Analysis in R, with Two- and Three-dimensional Graphics: The CA Package
-
Nenadic, O and Greenacre, M. 2007. Correspondence Analysis in R, with Two- and Three-dimensional Graphics: The CA Package. J Statist Soft, 20: 1-13.
-
(2007)
J Statist Soft
, vol.20
, pp. 1-13
-
-
Nenadic, O.1
Greenacre, M.2
-
30
-
-
0001122694
-
Role of biological and biochemical factors in soil mineral weathering
-
Madison: Wisconsin Soil Science Society of America
-
Robert, M and Berthelin, J. 1986. "Role of biological and biochemical factors in soil mineral weathering". In Interactions of soil minerals with natural organics and microbes, Madison: Wisconsin Soil Science Society of America.
-
(1986)
Interactions of soil minerals with natural organics and microbes
-
-
Robert, M.1
Berthelin, J.2
-
31
-
-
0347024169
-
Mineral stimulation of subsurface microorganisms: Release of limiting nutrients from silicates
-
Rogers, J R and Bennett, P C. 2004. Mineral stimulation of subsurface microorganisms: release of limiting nutrients from silicates. Chem Geol, 203: 91-108.
-
(2004)
Chem Geol
, vol.203
, pp. 91-108
-
-
Rogers, J.R.1
Bennett, P.C.2
-
32
-
-
58149242722
-
The diversity and abundance of bacteria inhabiting seafloor lavas positively correlate with rock alteration
-
Santelli, C M, Edgcomb, V P, Bach, W and Edwards, K J. 2008. The diversity and abundance of bacteria inhabiting seafloor lavas positively correlate with rock alteration. Environ Microbiol, 11: 86-98.
-
(2008)
Environ Microbiol
, vol.11
, pp. 86-98
-
-
Santelli, C.M.1
Edgcomb, V.P.2
Bach, W.3
Edwards, K.J.4
-
33
-
-
72949107142
-
Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
-
Schloss, P D, Wescott, S L, Ryabin, T, Hall, J R, Hartmann, M, Hollister, E B, Lesniewski, R A, Oakley, B B, Parks, D H, Robinson, C J, Stres, B, Thallinger, G G, Van Horn, D J and Weber, C F. 2009. Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities. Appl Environ Microbiol, 75: 7537-7541.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 7537-7541
-
-
Schloss, P.D.1
Wescott, S.L.2
Ryabin, T.3
Hall, J.R.4
Hartmann, M.5
Hollister, E.B.6
Lesniewski, R.A.7
Oakley, B.B.8
Parks, D.H.9
Robinson, C.J.10
Stres, B.11
Thallinger, G.G.12
van Horn, D.J.13
Weber, C.F.14
-
34
-
-
58149172168
-
Isolation and characterization of silicate mineral-solubilizing Bacillus globisporus Q12 from the surfaces of weathered feldspar
-
Sheng, X F, Zhao, F, He, L Y, Qiu, G and Chen, L. 2008. Isolation and characterization of silicate mineral-solubilizing Bacillus globisporus Q12 from the surfaces of weathered feldspar. Can J Microbiol, 54: 1064-1068.
-
(2008)
Can J Microbiol
, vol.54
, pp. 1064-1068
-
-
Sheng, X.F.1
Zhao, F.2
He, L.Y.3
Qiu, G.4
Chen, L.5
-
35
-
-
34249822804
-
Effect of Bacillus subtilis on granite weathering: A laboratory experiment
-
Song, W, Ogawa, N, Oguchi, C T, Hatta, T and Matsukura, Y. 2007. Effect of Bacillus subtilis on granite weathering: a laboratory experiment. CATENA, 70: 275-281.
-
(2007)
CATENA
, vol.70
, pp. 275-281
-
-
Song, W.1
Ogawa, N.2
Oguchi, C.T.3
Hatta, T.4
Matsukura, Y.5
-
36
-
-
0001878986
-
ADE-4: A multivariate analysis and graphical display software
-
Thioulouse, J, Chessel, D, Dolédec, S and Olivier, J M. 1997. ADE-4: a multivariate analysis and graphical display software. Statist Computing, 7: 75-83.
-
(1997)
Statist Computing
, vol.7
, pp. 75-83
-
-
Thioulouse, J.1
Chessel, D.2
Dolédec, S.3
Olivier, J.M.4
-
37
-
-
0035708175
-
Diversity of life in ocean floor basalt
-
Thorseth, I H, Torsvik, T, Torsvik, V, Daae, F L, Pedersen, R B and Party, K-S. 2001. Diversity of life in ocean floor basalt. Earth Planet Science Lett, 194: 31-37.
-
(2001)
Earth Planet Science Lett
, vol.194
, pp. 31-37
-
-
Thorseth, I.H.1
Torsvik, T.2
Torsvik, V.3
Daae, F.L.4
Pedersen, R.B.5
Party, K.-S.6
-
38
-
-
70349396101
-
Rhizosphere impact on the dissolution of test minerals in a forest ecosystem
-
Turpault, M-P, Nys, C and Calvaruso, C. 2009. Rhizosphere impact on the dissolution of test minerals in a forest ecosystem. Geoderma, 153: 147-154.
-
(2009)
Geoderma
, vol.153
, pp. 147-154
-
-
Turpault, M.-P.1
Nys, C.2
Calvaruso, C.3
-
39
-
-
34248217955
-
Effect of the mycorrhizosphere on the genotypic and metabolic diversity of the soil bacterial communities involved in mineral weathering in a forest soil
-
Uroz, S, Calvaruso, C, Turpault, M-P, Pierrat, J C, Mustin, C and Frey-Klett, P. 2007. Effect of the mycorrhizosphere on the genotypic and metabolic diversity of the soil bacterial communities involved in mineral weathering in a forest soil. Appl Environ Microbiol, 73: 3019-3027.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 3019-3027
-
-
Uroz, S.1
Calvaruso, C.2
Turpault, M.-P.3
Pierrat, J.C.4
Mustin, C.5
Frey-Klett, P.6
-
40
-
-
68749098369
-
Mineral weathering by bacteria: Ecology, actors and mechanisms
-
Uroz, S, Calvaruso, C, Turpault, M-P and Frey-Klett, P. 2009a. Mineral weathering by bacteria: ecology, actors and mechanisms. Trends in Microbiol, 17: 378-387.
-
(2009)
Trends in Microbiol
, vol.17
, pp. 378-387
-
-
Uroz, S.1
Calvaruso, C.2
Turpault, M.-P.3
Frey-Klett, P.4
-
41
-
-
70349200602
-
Efficient mineral weathering is a distinctive functional trait of the bacterial genus Collimonas
-
Uroz, S, Calvaruso, C, Turpault, M-P, Sarniguet, A, de Boer, W, Leveau, J HJ and Frey-Klett, P. 2009b. Efficient mineral weathering is a distinctive functional trait of the bacterial genus Collimonas. Soil Biol Biochem, 41: 2178-2186.
-
(2009)
Soil Biol Biochem
, vol.41
, pp. 2178-2186
-
-
Uroz, S.1
Calvaruso, C.2
Turpault, M.-P.3
Sarniguet, A.4
de Boer, W.5
Leveau, J.H.J.6
Frey-Klett, P.7
-
42
-
-
77954695132
-
Pyrosequencing reveals a contrasted bacterial diversity between oak rhizosphere and surrounding soil
-
Uroz, S, Buée, M, Murat, C, Frey-Klett, P and Martin, F. 2010. Pyrosequencing reveals a contrasted bacterial diversity between oak rhizosphere and surrounding soil. Environ Microbiol Reports, 2: 281-288.
-
(2010)
Environ Microbiol Reports
, vol.2
, pp. 281-288
-
-
Uroz, S.1
Buée, M.2
Murat, C.3
Frey-Klett, P.4
Martin, F.5
-
43
-
-
38749131185
-
Characterization of elemental release during microbe-granite interactions at T = 28°C
-
Wu, L, Jacobson, A D and Hausner, M. 2008. Characterization of elemental release during microbe-granite interactions at T = 28°C. Geochim Cosmochim Acta, 72: 1076-1095.
-
(2008)
Geochim Cosmochim Acta
, vol.72
, pp. 1076-1095
-
-
Wu, L.1
Jacobson, A.D.2
Hausner, M.3
|