Epilithic and endolithic bacterial communities in limestone from a Maya archaeological site

Microbial Ecology

Volumn 51, Issue 1, 2006, Pages 51-64

  McNamara, Christopher J ^a   Perry IV, Thomas D ^a   Bearce, Kristen A ^a   Hernandez Duque, Guillermo ^b   Mitchell, Ralph ^a  

^a HARVARD UNIVERSITY   (United States)

^b Univ Politecnica de Aguascalientes   (Mexico)

Author keywords

[No Author keywords available]

Indexed keywords

CALCIUM CARBONATE; PRIMER DNA; RIBOSOME DNA; RNA 16S;

ARTIFACT; BIODEGRADATION; ENDOLITHON; EPILITHON; LIMESTONE; MICROBIAL ECOLOGY;

ARCHEOLOGY; ARTICLE; BACTERIUM; BIODIVERSITY; CHEMISTRY; CLASSIFICATION; GENETICS; ISOLATION AND PURIFICATION; METHODOLOGY; MEXICO; MOLECULAR CLONING; PHYLOGENY;

ARCHAEOLOGY; BACTERIA; BIODIVERSITY; CALCIUM CARBONATE; CLONING, MOLECULAR; DNA PRIMERS; DNA, RIBOSOMAL; MEXICO; PHYLOGENY; RNA, RIBOSOMAL, 16S;

MEXICO [NORTH AMERICA]; NORTH AMERICA;

ACIDOBACTERIA; ACTINOBACTERIA; BACTERIA (MICROORGANISMS); FIRMICUTES; PROTEOBACTERIA;

EID: 32244436723     PISSN: 00953628     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00248-005-0200-5     Document Type: Article

References (66)

1. SF Altschul TL Madden AA Schäffer J Zhang Z Zhang W Miller DJ Lipman 1997 Gapped BLAST and PSI-BLAST: a new generation of protein database search programs Nucleic Acids Res 25 3389 3402
2. PS Amy DL Haldeman D Ringelberg DH Hall C Russell 1992 Comparison of identification systems for classification of bacteria isolated from water and endolithic habitats within the deep subsurface Appl Environ Microbiol 58 3367 3373
3. C Ascaso J Wierzchos R Castello 1998 Study of the biogenic weathering of calcareous limestones caused by lichen and endolithic microorganisms Int Biodeterior Biodegrad 42 29 38
4. JF Banfield WW Barker SA Welch A Taunton 1999 Biological impact on mineral dissolution: application of the lichen model to understanding mineral weathering in the rhizosphere Proc Natl Acad Sci USA 96 3404 3411
5. M Bassi A Ferrari M Realini C Sorlini 1986 Red stains on the Certosa of Pavia: a case of biodeterioration Int Biodeterior 3 201 205
6. BE Christensen WG Characklis 1990 Physical and chemical properties of biofilms WG Characklis KC Marshall Biofilms Wiley New York
7. JR Cole B Chai TL Marsh RJ Farris Q Wang SA Kulam S Chandra DM McGarrell TM Schmidt GM Garrity JM Tiedje 2003 The Ribosomal Database Project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy Nucleic Acids Res 31 442 443
8. CA Crispim PM Gaylarde CC Gaylarde 2003 Algal and cyanobacterial biofilms on calcareous historic buildings Curr Microbiol 46 79 82
9. JR De la Torre BM Goebel EI Friedmann NR Pace 2003 Microbial diversity of cryptoendolithic communities from the McMurdo Dry Valleys, Antarctica Appl Environ Microbiol 69 3858 3867
10. MP Di Bonaventura M del Gallo P Cacchio C Ercole A Lepidi 1999 Microbial formation of oxalate films on monument surfaces: bioprotection or biodeterioration? Geomicrobiol J 16 55 64
11. CC Gaylarde LHG Morton 1999 Deteriogenic biofilms on buildings and their control: a review Biofouling 14 59 74
12. PM Gaylarde CC Gaylarde PS Guiamet SGG de Saravia HA Videla 2001 Biodeterioration of Mayan buildings at Uxmal and Tulum, Mexico Biofouling 17 41 45
13. PS Griffin N Indictor RJ Koestler 1991 The biodeterioration of stone: a review of deterioration mechanisms, conservation case histories, and treatment Int Biodeterior 28 187 207
14. I Groth P Schumann L Laiz S Sanchez-Moral JC Canaveras C Saiz-Jimenez 2001 Geomicrobiological study of the Grotta dei Cervi, Porto Badisco, Italy Geomicrobiol J 18 241 258
15. C Gurtner J Heyrman G Pinar W Lubitz J Swings S Rolleke 2000 Comparative analysis of the bacterial diversity on two different biodeteriorated wall paintings by DGGE and 16S rDNA sequence analysis Int Biodeterior Biodegrad 46 229 239
16. ME Hale Jr 1983 The Biology of Lichens 3 Edward Arnold London 137 138
17. P Hirsch FEW Eckhardt RJ Palmer Jr 1995 Fungi active in weathering of rock and stone monuments Can J Bot 73 S1384 S1390
18. HS Horn 1966 Measurement of "overlap" in comparative ecological studies Am Nat 100 419 424
19. F Inagaki K Takai K Tetsushi Y Sakihama A Inoue K Horikoshi 2002 Profile of microbial community structure and presence of endolithic microorganisms inside a deep-sea rock Geomicrobiol J 19 535 552
20. RJ Koestler AE Charola M Wypyski JJ Lee 1985 Microbiologically induced deterioration of dolomitic and calcitic stone as viewed by scanning electron microscopy G Felix Vth International Congress on Deterioration and Conservation of Stone Presses Polytechniques Romandes Lausanne, Switzerland
21. CJ Krebs 1999 Ecological Methodology 2 Benjamin-Cummings Menlo Park, CA
22. WE Krumbein 1988 Microbial interactions with mineral materials DR Houghton RN Smith HOW Eggins Biodeterioration 7 Elsevier London 78 100
23. R Kumar AV Kumar 1999 Biodeterioration of stone in tropical environments The Getty Conservation Institute Los Angeles, CA
24. R Kumar WS Ginell 1995 Evaluation of consolidants for protection of weak Maya limestone Methods of Evaluating Products for the Conservation of Porous Building Materials in Monuments, Preprints of the International Colloquium ICCROM Rome
25. L Laiz M Gonzalez-Delvalle B Hermosin A Ortiz-Martinez C Saiz-Jimenez 2003 Isolation of cave bacteria and substrate utilization at different temperatures Geomicrobiol J 20 479 489
26. A Lüttge PG Conrad 2004 Direct observation of microbial inhibition of calcite dissolution Appl Environ Microbiol 70 1627 1632
27. CJ McNamara TD Perry M Zinn M Breuker R Mitchell 2002 Biodeterioration of concrete and stone B Little Microbiologically Influenced Corrosion NACE International Houston, TX
28. CJ McNamara TD Perry M Zinn M Breuker G Hernandez-Duque R Mitchell 2003 Microbial processes in the deterioration of Mayan archaeological buildings in southern Mexico RJ Koestler VH Koestler AE Charola FE Nieto-Fernandez Art, Biology, and Conservation: Biodeterioration of Works of Art The Metropolitan Museum of Art New York
29. SA Morris S Radajewski TW Willison JC Murrell 2002 Identification of the functionally active methanotroph population in a peat soil microcosm by stable-isotope probing Appl Environ Microbiol 68 1446 1453
30. G Muyzer EC De Waal AG Uitterlinden 1993 Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA Appl Environ Microbiol 59 695 700
31. G Muyzer A Teske CO Wirsen HW Jannasch 1995 Phylogenetic relationships of Thiomicrospira species and their identification in deep-sea hydrothermal vent samples by denaturing gradient gel electrophoresis of 16S rDNA fragments Arch Microbiol 164 165 172
32. JA Nienow EI Friedmann 1993 Terrestrial lithophytic (rock) communities EI Friedmann Antarctic Microbiology Wiley-Liss Inc. New York
33. CJ Newberry G Webster BA Cragg RJ Parkes AJ Weightman JC Fry 2004 Diversity of prokaryotes and methanogenesis in deep subsurface sediments from the Nankai Trough, Ocean Drilling Program Leg 190 Environ Microbiol 6 274 287
34. O Ortega-Morales G Hernández-Duque L Borges-Gómez J Guezennec 1999 Characterization of epilithic microbial communities associated with Mayan stone monuments in Yucatan, Mexico Geomicrobiol J 16 221 232
35. O Ortega-Morales J Guezennec G Hernández-Duque CC Gaylarde PM Gaylarde 2000 Phototrophic biofilms on ancient Mayan buildings in Yucatan, Mexico Curr Microbiol 40 81 85
36. TD Perry CJ McNamara R Mitchell G Hernandez-Duque 2003 An investigation of bacterial dissolution of Maya limestone: biodiversity and functional analysis C Saiz-Jimenez Molecular Biology and Cultural Heritage Swets and Zeitlinger Lisse
37. TD Perry OW Duckworth CJ McNamara ST Martin R Mitchell 2004 Effects of the biologically produced polymer alginic acid on macroscopic and microscopic calcite dissolution rates Environ Sci Technol 38 3040 3046
38. M Pilson 1998 An Introduction to the Chemistry of the Sea Prentice-Hall Upper Saddle River, NJ
39. KG Porter YS Feig 1980 The use of DAPI for identifying and counting aquatic microflora Limnol Oceanogr 25 943 948
40. L Raymond 1995 Petrology: The Study of Igneous, Sedimentary, and Metamorphic Rocks Brown Publishers Dubuque, IA
41. RJ Reeder M Nugent C Tait D Morris S Heald K Beck W Hess A Lazirotti 2001 Coprecipitation of uranium (VI) with calcite: XAFS, micro-XAS, and luminescence characterization Geochim Cosmochim Acta 65 3491 3503
42. C Rodriguez-Navarro M Rodriguez-Gallego KB Chekroun MT Gonzalez-Muñoz 2003 Conservation of ornamental stone by Myxococcus xanthus-induced carbonate biomineralization Appl Environ Microbiol 69 2182 2193
43. S Rolleke G Muyzer C Wawer G Wanner W Lubitz 1996 Identification of bacteria in a biodegraded wall painting by denaturing gradient gel electrophoresis of PCR-amplified gene fragments coding for 16S rRNA Appl Environ Microbiol 62 2059 2065
44. C Saiz-Jimenez J Garcia-Rowe MA Garcia del Cura JJ Ortega-Calvo E Roekens R Van Grieken 1990 Endolithic cyanobacteria in Maastricht limestone Sci Total Environ 94 209 220
45. C Saiz-Jimenez 1999 Biogeochemistry of weathering processes in monuments Geomicrobiol J 16 27 37
46. C Saiz-Jimenez 2001 The biodeterioration of building materials JC Stoecker Microbiologically Influenced Corrosion, vol. 2 NACE International Houston
47. W Sand E Bock 1991 Biodeterioration of mineral materials by microorganisms-biogenic sulfuric and nitric acid corrosion of concrete and natural stone Geomicrobiol J 9 129 138
48. C Schabereiter-Gurtner G Pinar W Lubitz S Rolleke 2001 An advanced molecular strategy to identify bacterial communities on art objects J Microbiol Methods 45 77 87
49. C Schabereiter-Gurtner C Saiz-Jimenez G Pinar W Lubitz S Rolleke 2002 Altamira cave Paleolithic paintings harbor partly unknown bacterial communities FEMS Microbiol Lett 211 7 11
50. C Schabereiter-Gurtner C Saiz-Jimenex G Pinar W Lubitz S Rolleke 2004 Phylogenetic diversity if bacteria associated with Paleolithic paintings and surrounding rock walls in two Spanish caves (Llonín and La Garma) FEMS Microbiol Ecol 47 235 247
51. WH Schlesinger 1997 Biogeochemistry: An Analysis of Global Change Academic Press San Diego, CA
52. D Simberloff 1978 Use of rarefaction and related methods in ecology KL Dickson J Cairns Jr RJ Livingston Biological Data in Water Pollution Assessment: Quantitative and Statistical Analysis, ASTM STP 652 American Society for Testing and Materials Philadelphia, PA
53. K Sterflinger WE Krumbein 1997 Dematiaceous fungi as a major agent for biopitting on Mediterranean marbles and limestones Geomicrobiol J 14 219 230
54. SL Stipp J Konnerup-Madsen K Franzreb A Kulik H Mathieu 1998 Spontaneous movement of ions through calcite at standard temperature and pressure Nature 396 356 359
55. 3 Soil Biol Biochem 31 1563 1571
56. W Stumm JJ Morgan 1996 Aquatic Chemistry Wiley New York
57. DL Swofford 2003 PAUP*. Phylogenic Analysis Using Parsimony (*and other Methods), Version 4 Sinauer Associates Sunderland, MA
58. M Taubel P Kampfer S Buczolits W Lubitz HJ Busse 2003 Bacillus barbaricus sp. nov., isolated from an experimental wall painting Int J Syst Evol Microbiol 53 725 730
59. JD Thompson TJ Gibson F Plewniak F Jeanmougin DG Higgins 1997 The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools Nucleic Acids Res 24 4876 4882
60. P Tiano L Biagiotti G Mastromei 1999 Bacterial bio-mediated calcite precipitation for monumental stones conservation: methods of evaluation J Microbiol Methods 36 139 145
61. HA Videla PS Guiamet SG de Saravia 2000 Biodeterioration of Mayan archaeological sites in the Yucatan Peninsula, Mexico Int Biodeterior Biodegrad 46 335 341
62. Videla, HA, Guiamet, PS, de Saravia, SG, Maldonaldo, L (2001) Mechanisms of Microbial Biodeterioration of Limestone in Mayan Buildings. Paper No. 01250, Corrosion2001, NACE International, Houston
63. T Warscheid M Oelting WE Krumbein 1991 Physico-chemical aspects of biodeterioration processes in rocks with special regard to organic pollutants Int Biodeterior 28 37 48
64. T Warscheid J Braams 2000 Biodeterioration of stone: a review Int Biodeterior Biodegrad 46 343 368
65. SA Welch P Vandevivere 1994 Effect of microbial and other naturally occurring polymers on mineral dissolution Geomicrobiol J 12 227 238
66. H Wolda 1981 Similarity indices, sample size and diversity Oecologia 50 296 302