메뉴 건너뛰기




Volumn 63, Issue 3, 2012, Pages 701-709

Response of Induced Perturbation on Replicating β-Proteobacterial Ammonia-Oxidizing Populations in Soil

Author keywords

[No Author keywords available]

Indexed keywords

AMMONIA;

EID: 84858005527     PISSN: 00953628     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00248-011-9970-0     Document Type: Article
Times cited : (4)

References (56)
  • 1
    • 50049126125 scopus 로고    scopus 로고
    • Resistance, resilience, and redundancy in microbial communities
    • Allison SD, Martiny JBH (2008) Resistance, resilience, and redundancy in microbial communities. Proc Natl Acad Sci USA 105: 11512-11519.
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 11512-11519
    • Allison, S.D.1    Martiny, J.B.H.2
  • 2
    • 28644445396 scopus 로고    scopus 로고
    • Combined bromodeoxyuridine immunocapture and terminal restriction fragment length polymorphism analysis highlights differences in active soil bacterial communities due to Glomus mosseae inoculation or plant species
    • Artursson V, Finlay RD, Jansson JK (2005) Combined bromodeoxyuridine immunocapture and terminal restriction fragment length polymorphism analysis highlights differences in active soil bacterial communities due to Glomus mosseae inoculation or plant species. Environ Microbiol 7: 1952-1966.
    • (2005) Environ Microbiol , vol.7 , pp. 1952-1966
    • Artursson, V.1    Finlay, R.D.2    Jansson, J.K.3
  • 3
    • 0036840895 scopus 로고    scopus 로고
    • 2O release and on the community structure of ammonia oxidisers and denitrifiers
    • 2O release and on the community structure of ammonia oxidisers and denitrifiers. Appl Environ Microbiol 68: 5685-5692.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 5685-5692
    • Avrahami, S.1    Conrad, R.2    Braker, G.3
  • 4
    • 0018852895 scopus 로고
    • Specific inhibition of nitrite oxidation by chlorate and its use in assessing nitrification in soils and sediments
    • Belser LW, Mays EL (1980) Specific inhibition of nitrite oxidation by chlorate and its use in assessing nitrification in soils and sediments. Appl Environ Microbiol 39: 505-510.
    • (1980) Appl Environ Microbiol , vol.39 , pp. 505-510
    • Belser, L.W.1    Mays, E.L.2
  • 5
    • 0038647102 scopus 로고    scopus 로고
    • Long-term effects of sewage sludge applications on soil properties, cadmium availability and distribution in arable soil
    • Bergkvist P, Jarvis N, Berggren D, Carlgren K (2003) Long-term effects of sewage sludge applications on soil properties, cadmium availability and distribution in arable soil. Agr Ecosyst Environ 97: 167-179.
    • (2003) Agr Ecosyst Environ , vol.97 , pp. 167-179
    • Bergkvist, P.1    Jarvis, N.2    Berggren, D.3    Carlgren, K.4
  • 6
    • 0032792811 scopus 로고    scopus 로고
    • Culture-independent identification of microorganisms that respond to specified stimuli
    • Borneman J (1999) Culture-independent identification of microorganisms that respond to specified stimuli. Appl Environ Microbiol 65: 3398-3400.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 3398-3400
    • Borneman, J.1
  • 8
    • 66349094682 scopus 로고    scopus 로고
    • Using phylogenetic, functional and trait diversity to understand patterns of plant community productivity
    • Cadotte MW, Cavender-Bares J, Tilman D, Oakley TH (2009) Using phylogenetic, functional and trait diversity to understand patterns of plant community productivity. PLoS One 4: e5695.
    • (2009) PLoS One , vol.4
    • Cadotte, M.W.1    Cavender-Bares, J.2    Tilman, D.3    Oakley, T.H.4
  • 9
    • 0035705142 scopus 로고    scopus 로고
    • Impact of herbicides on the abundance and structure of indigenous β-subgroup ammonia-oxidizer communities in soil microcosms
    • Chang YJ, Anwar Hussain AKM, Stephen JR, Mullens MD, White DC, Peacock A (2001) Impact of herbicides on the abundance and structure of indigenous β-subgroup ammonia-oxidizer communities in soil microcosms. Environ Tox Chem 20: 2462-2468.
    • (2001) Environ Tox Chem , vol.20 , pp. 2462-2468
    • Chang, Y.J.1    Anwar Hussain, A.K.M.2    Stephen, J.R.3    Mullens, M.D.4    White, D.C.5    Peacock, A.6
  • 11
    • 33750936639 scopus 로고    scopus 로고
    • Long-term impact of fertilization on activity and composition of bacterial communities and metabolic guilds in agricultural soil
    • Enwall K, Nyberg K, Bertilsson S, Cederlund H, Stenström J, Hallin S (2007) Long-term impact of fertilization on activity and composition of bacterial communities and metabolic guilds in agricultural soil. Soil Biol Biochem 39: 106-115.
    • (2007) Soil Biol Biochem , vol.39 , pp. 106-115
    • Enwall, K.1    Nyberg, K.2    Bertilsson, S.3    Cederlund, H.4    Stenström, J.5    Hallin, S.6
  • 12
    • 29144511306 scopus 로고    scopus 로고
    • Activity and composition of the denitrifying bacterial community respond differently to long-term fertilization
    • Enwall K, Philippot L, Hallin S (2005) Activity and composition of the denitrifying bacterial community respond differently to long-term fertilization. Appl Environ Microbiol 71: 8335-8343.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 8335-8343
    • Enwall, K.1    Philippot, L.2    Hallin, S.3
  • 13
    • 14344260968 scopus 로고    scopus 로고
    • Bacterial diversity promotes community stability and functional resilience after perturbation
    • Girvan MS, Campbell CD, Killham KS, Prosser JI, Glover LA (2005) Bacterial diversity promotes community stability and functional resilience after perturbation. Environ Microbiol 7: 301-313.
    • (2005) Environ Microbiol , vol.7 , pp. 301-313
    • Girvan, M.S.1    Campbell, C.D.2    Killham, K.S.3    Prosser, J.I.4    Glover, L.A.5
  • 14
    • 67349287510 scopus 로고    scopus 로고
    • Relationship between N-cycling communities and ecosystem functioning in a 50-year-old fertilization experiment
    • Hallin S, Jones CM, Schloter M, Philippot L (2009) Relationship between N-cycling communities and ecosystem functioning in a 50-year-old fertilization experiment. ISME J 3: 597-605.
    • (2009) ISME J , vol.3 , pp. 597-605
    • Hallin, S.1    Jones, C.M.2    Schloter, M.3    Philippot, L.4
  • 15
    • 34248230110 scopus 로고    scopus 로고
    • Actively growing bacteria in the inland sea of Japan, identified by combined bromodeoxyuridine immunocapture and denaturing gradient gel electrophoresis
    • Hamasaki K, Taniguchi A, Tada Y, Long RA, Azam F (2007) Actively growing bacteria in the inland sea of Japan, identified by combined bromodeoxyuridine immunocapture and denaturing gradient gel electrophoresis. Appl Environ Microbiol 73: 2787-2798.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 2787-2798
    • Hamasaki, K.1    Taniguchi, A.2    Tada, Y.3    Long, R.A.4    Azam, F.5
  • 16
    • 0030790950 scopus 로고    scopus 로고
    • Direct molecular biological analyses of ammonia oxidising bacteria populations in cultivated soil plots treated with swine manure
    • Hastings RC, Ceccherini MT, Miclaus N, Saunders JR, Bazzicalupo M, McArthy AJ (1997) Direct molecular biological analyses of ammonia oxidising bacteria populations in cultivated soil plots treated with swine manure. FEMS Microbiol Ecol 23: 45-54.
    • (1997) FEMS Microbiol Ecol , vol.23 , pp. 45-54
    • Hastings, R.C.1    Ceccherini, M.T.2    Miclaus, N.3    Saunders, J.R.4    Bazzicalupo, M.5    McArthy, A.J.6
  • 17
    • 8344221256 scopus 로고    scopus 로고
    • Biodiversity effects on soil processes explained by interspecific functional dissimilarity
    • Heemsbergen DA, Berg MP, Loreau M, van Haj JR, Faber JH, Verhoef HA (2004) Biodiversity effects on soil processes explained by interspecific functional dissimilarity. Science 306: 1019-1020.
    • (2004) Science , vol.306 , pp. 1019-1020
    • Heemsbergen, D.A.1    Berg, M.P.2    Loreau, M.3    van Haj, J.R.4    Faber, J.H.5    Verhoef, H.A.6
  • 18
    • 79960622665 scopus 로고    scopus 로고
    • Survey of bromodeoxyuridine uptake among environmental bacteria and variation in uptake rates in a taxonomically diverse set of bacterial isolates
    • Hellman M, Berg K, Brandt KK, Hallin S (2011) Survey of bromodeoxyuridine uptake among environmental bacteria and variation in uptake rates in a taxonomically diverse set of bacterial isolates. J Microbiol Meth 86: 376-378.
    • (2011) J Microbiol Meth , vol.86 , pp. 376-378
    • Hellman, M.1    Berg, K.2    Brandt, K.K.3    Hallin, S.4
  • 20
    • 67649939034 scopus 로고    scopus 로고
    • Bacteria rather than Archaea dominate microbial ammonia oxidation in an agricultural soil
    • Jia Z, Conrad R (2009) Bacteria rather than Archaea dominate microbial ammonia oxidation in an agricultural soil. Environ Microbiol 11: 1658-1671.
    • (2009) Environ Microbiol , vol.11 , pp. 1658-1671
    • Jia, Z.1    Conrad, R.2
  • 21
    • 84931748976 scopus 로고    scopus 로고
    • Genotypic richness and dissimilarity opposingly affect ecosystem functioning
    • Jousset A, Schmid B, Scheu S, Eisenhauer N (2011) Genotypic richness and dissimilarity opposingly affect ecosystem functioning. Ecol Lett 14: 537-545.
    • (2011) Ecol Lett , vol.14 , pp. 537-545
    • Jousset, A.1    Schmid, B.2    Scheu, S.3    Eisenhauer, N.4
  • 23
    • 0034775280 scopus 로고    scopus 로고
    • Ammonia-oxidizing bacteria: a model for molecular microbial ecology
    • Kowalchuk GA, Stephen JR (2001) Ammonia-oxidizing bacteria: a model for molecular microbial ecology. Annu Rev Microbiol 55: 485-529.
    • (2001) Annu Rev Microbiol , vol.55 , pp. 485-529
    • Kowalchuk, G.A.1    Stephen, J.R.2
  • 24
    • 0030901922 scopus 로고    scopus 로고
    • Analysis of ammonia-oxidising bacteria of the β-subdivision of the class proteobacteria in coastal sand dunes by denaturing gradient gel electrophoresis and sequencing of PCR-amplified 16S ribosomal DNA fragments
    • Kowalchuk GA, Stephen JR, De Boer W, Prosser JI, Embley TM, Woldendorp JW (1997) Analysis of ammonia-oxidising bacteria of the β-subdivision of the class proteobacteria in coastal sand dunes by denaturing gradient gel electrophoresis and sequencing of PCR-amplified 16S ribosomal DNA fragments. Appl Environ Microbiol 63: 1489-1497.
    • (1997) Appl Environ Microbiol , vol.63 , pp. 1489-1497
    • Kowalchuk, G.A.1    Stephen, J.R.2    de Boer, W.3    Prosser, J.I.4    Embley, T.M.5    Woldendorp, J.W.6
  • 25
    • 33646853204 scopus 로고    scopus 로고
    • Phenols in anaerobic digestion processes and inhibition of ammonium oxidising bacteria (AOB) in soil
    • Levén L, Nyberg K, Korkea-aho L, Schnürer A (2006) Phenols in anaerobic digestion processes and inhibition of ammonium oxidising bacteria (AOB) in soil. Sci Total Environ 364: 229-238.
    • (2006) Sci Total Environ , vol.364 , pp. 229-238
    • Levén, L.1    Nyberg, K.2    Korkea-Aho, L.3    Schnürer, A.4
  • 26
    • 0036794643 scopus 로고    scopus 로고
    • Changes in the population structure of β-group autotrophic ammonia oxidising bacteria in arable soils in response to agricultural practice
    • Mendum TA, Hirsch PR (2002) Changes in the population structure of β-group autotrophic ammonia oxidising bacteria in arable soils in response to agricultural practice. Soil Biol Biochem 34: 1479-1485.
    • (2002) Soil Biol Biochem , vol.34 , pp. 1479-1485
    • Mendum, T.A.1    Hirsch, P.R.2
  • 27
    • 0032874459 scopus 로고    scopus 로고
    • Use of molecular and isotopic techniques to monitor the response of autotrophic ammonia-oxidizing populations of the β-subdivisions of the class proteobacteria in arable soils to nitrogen fertilizer
    • Mendum TA, Sockett RE, Hirsch PR (1999) Use of molecular and isotopic techniques to monitor the response of autotrophic ammonia-oxidizing populations of the β-subdivisions of the class proteobacteria in arable soils to nitrogen fertilizer. Appl Environ Microbiol 65: 4155-4162.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 4155-4162
    • Mendum, T.A.1    Sockett, R.E.2    Hirsch, P.R.3
  • 29
    • 38949113807 scopus 로고    scopus 로고
    • Bacterial carbon processing by generalist species in the coastal ocean
    • Mou X, Sun S, Edwards RA, Hodson RE, Moran MA (2008) Bacterial carbon processing by generalist species in the coastal ocean. Nature 451: 708-711.
    • (2008) Nature , vol.451 , pp. 708-711
    • Mou, X.1    Sun, S.2    Edwards, R.A.3    Hodson, R.E.4    Moran, M.A.5
  • 30
    • 0031967457 scopus 로고    scopus 로고
    • Species redundancy and ecosystem reliability
    • Naeem S (1998) Species redundancy and ecosystem reliability. Conserv Biol 12: 39-45.
    • (1998) Conserv Biol , vol.12 , pp. 39-45
    • Naeem, S.1
  • 31
    • 33644845235 scopus 로고    scopus 로고
    • Ammonia-oxidizing communities in agricultural soil incubated with organic waste residues
    • Nyberg K, Schnürer A, Sundh I, Jarvis Å, Hallin S (2006) Ammonia-oxidizing communities in agricultural soil incubated with organic waste residues. Biol Fert Soils 42: 315-323.
    • (2006) Biol Fert Soils , vol.42 , pp. 315-323
    • Nyberg, K.1    Schnürer, A.2    Sundh, I.3    Jarvis, A.4    Hallin, S.5
  • 32
    • 69949127231 scopus 로고    scopus 로고
    • Growth of ammonia-oxidizing archaea in soil microcosms is inhibited by acetylene
    • Offre P, Prosser JI, Nicol GW (2009) Growth of ammonia-oxidizing archaea in soil microcosms is inhibited by acetylene. FEMS Microbiol Ecol 70: 99-108.
    • (2009) FEMS Microbiol Ecol , vol.70 , pp. 99-108
    • Offre, P.1    Prosser, J.I.2    Nicol, G.W.3
  • 33
    • 0035432486 scopus 로고    scopus 로고
    • Influence of effluent irrigation on community composition and function of ammonia-oxidizing bacteria in soil
    • Oved T, Shaviv A, Goldrath T, Mandelbaum RT, Minz D (2001) Influence of effluent irrigation on community composition and function of ammonia-oxidizing bacteria in soil. Appl Environ Microbiol 67: 3426-3433.
    • (2001) Appl Environ Microbiol , vol.67 , pp. 3426-3433
    • Oved, T.1    Shaviv, A.2    Goldrath, T.3    Mandelbaum, R.T.4    Minz, D.5
  • 34
    • 0036840901 scopus 로고    scopus 로고
    • Identification of DNA-synthesizing bacterial cells in coastal North Sea plankton
    • Pernthaler A, Pernthaler J, Schattenhofer M, Amann R (2002) Identification of DNA-synthesizing bacterial cells in coastal North Sea plankton. Appl Environ Microbiol 68: 5728-5736.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 5728-5736
    • Pernthaler, A.1    Pernthaler, J.2    Schattenhofer, M.3    Amann, R.4
  • 36
    • 0034466757 scopus 로고    scopus 로고
    • Phylogeny of all recognised species of ammonia oxidizers based on comparative 16S rRNA and amoA sequence analysis: implications for molecular diversity surveys
    • Purkhold U, Pommerening-Röser A, Juretschko S, Schmid MC, Koops H-P, Wagner M (2000) Phylogeny of all recognised species of ammonia oxidizers based on comparative 16S rRNA and amoA sequence analysis: implications for molecular diversity surveys. Appl Environ Microbiol 66: 5368-5382.
    • (2000) Appl Environ Microbiol , vol.66 , pp. 5368-5382
    • Purkhold, U.1    Pommerening-Röser, A.2    Juretschko, S.3    Schmid, M.C.4    Koops, H.-P.5    Wagner, M.6
  • 37
    • 0141502465 scopus 로고    scopus 로고
    • 16S rRNA and amoA-based phylogeny of 12 novel betaproteobacterial ammonia-oxidizing isolates: extension of the dataset and proposal of a new lineage within the nitrosomonads
    • Purkhold U, Wagner M, Timmerman G, Pommerening-Röser A, Koops H-P (2003) 16S rRNA and amoA-based phylogeny of 12 novel betaproteobacterial ammonia-oxidizing isolates: extension of the dataset and proposal of a new lineage within the nitrosomonads. Int J Syst Evol Microbiol 53: 1485-1494.
    • (2003) Int J Syst Evol Microbiol , vol.53 , pp. 1485-1494
    • Purkhold, U.1    Wagner, M.2    Timmerman, G.3    Pommerening-Röser, A.4    Koops, H.-P.5
  • 39
    • 0023375195 scopus 로고
    • The neighbor-joining method: a new method for reconstructing phylogenetic trees
    • Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406-425.
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 40
    • 0032953321 scopus 로고    scopus 로고
    • Effect of toxic metals on indigenous soil β-subgroup proteobacterium ammonia oxidizer community structure and protection against toxicity by inoculated metal-resistant bacteria
    • Stephen JR, Chang Y-J, Macnaughton SJ, Kowalchuk GA, Leung K, Flemming CA, White DC (1999) Effect of toxic metals on indigenous soil β-subgroup proteobacterium ammonia oxidizer community structure and protection against toxicity by inoculated metal-resistant bacteria. Appl Environ Microbiol 65: 95-101.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 95-101
    • Stephen, J.R.1    Chang, Y.-J.2    Macnaughton, S.J.3    Kowalchuk, G.A.4    Leung, K.5    Flemming, C.A.6    White, D.C.7
  • 41
    • 0029805297 scopus 로고    scopus 로고
    • Molecular diversity of soil and marine 16S rRNA gene sequences related to β-subgroup ammonia-oxidizing bacteria
    • Stephen JR, McCaig AE, Smith Z, Prosser JI, Embley TM (1996) Molecular diversity of soil and marine 16S rRNA gene sequences related to β-subgroup ammonia-oxidizing bacteria. Appl Environ Microbiol 62: 4147-4154.
    • (1996) Appl Environ Microbiol , vol.62 , pp. 4147-4154
    • Stephen, J.R.1    McCaig, A.E.2    Smith, Z.3    Prosser, J.I.4    Embley, T.M.5
  • 42
    • 0028827139 scopus 로고
    • Broad-range PCR amplification and DNA sequence analysis reveals variable motifs in 16S rRNA genes of Mobiluncus species
    • Tiveljung A, Backstrom J, Forsum U, Monstein HJ (1995) Broad-range PCR amplification and DNA sequence analysis reveals variable motifs in 16S rRNA genes of Mobiluncus species. APMIS 103: 755-793.
    • (1995) Apmis , vol.103 , pp. 755-793
    • Tiveljung, A.1    Backstrom, J.2    Forsum, U.3    Monstein, H.J.4
  • 43
  • 45
    • 0036270789 scopus 로고    scopus 로고
    • Microbial diversity and function in soil: from genes to ecosystems
    • Torsvik V, Øvreås Å (2002) Microbial diversity and function in soil: from genes to ecosystems. Curr Op Microbiol 5: 240-245.
    • (2002) Curr Op Microbiol , vol.5 , pp. 240-245
    • Torsvik, V.1    Øvreås, A.2
  • 46
    • 41849095617 scopus 로고    scopus 로고
    • Growth, activity and temperature responses of ammonia-oxidizing archaea and bacteria in soil microcosms
    • Tourna M, Freitag TE, Nicol GW, Prosser JI (2008) Growth, activity and temperature responses of ammonia-oxidizing archaea and bacteria in soil microcosms. Environ Microbiol 10: 1357-1364.
    • (2008) Environ Microbiol , vol.10 , pp. 1357-1364
    • Tourna, M.1    Freitag, T.E.2    Nicol, G.W.3    Prosser, J.I.4
  • 48
    • 0033030154 scopus 로고    scopus 로고
    • Immunochemical detection and isolation of DNA from metabolically active bacteria
    • Urbach E, Vergin KL, Giovannoni SJ (1999) Immunochemical detection and isolation of DNA from metabolically active bacteria. Appl Environ Microbiol 65: 1207-1213.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 1207-1213
    • Urbach, E.1    Vergin, K.L.2    Giovannoni, S.J.3
  • 49
    • 0028509254 scopus 로고
    • TREECON for Windows: a software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment
    • van de Peer Y, De Wachter R (1994) TREECON for Windows: a software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment. Comput Applic Biosci 10: 569-570.
    • (1994) Comput Applic Biosci , vol.10 , pp. 569-570
    • van de Peer, Y.1    de Wachter, R.2
  • 50
    • 0027089264 scopus 로고
    • Biodiversity and ecological redundancy
    • Walker BH (1992) Biodiversity and ecological redundancy. Conserv Biol 6: 18-23.
    • (1992) Conserv Biol , vol.6 , pp. 18-23
    • Walker, B.H.1
  • 51
    • 25144475117 scopus 로고    scopus 로고
    • Abundances, identity, and growth state of actinobacteria in mountain lakes at different UV transparency
    • Warnecke F, Sommaruga R, Sekar R, Hofer JS, Pernthaler J (2005) Abundances, identity, and growth state of actinobacteria in mountain lakes at different UV transparency. Appl Environ Microbiol 71: 5551-5559.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 5551-5559
    • Warnecke, F.1    Sommaruga, R.2    Sekar, R.3    Hofer, J.S.4    Pernthaler, J.5
  • 53
    • 85047679205 scopus 로고    scopus 로고
    • Soil C balance in a long-term field experiment in relation to size of the microbial biomass
    • Witter E (1996) Soil C balance in a long-term field experiment in relation to size of the microbial biomass. Biol Fert Soils 23: 33-37.
    • (1996) Biol Fert Soils , vol.23 , pp. 33-37
    • Witter, E.1
  • 54
    • 0028994668 scopus 로고
    • Microbial utilization of (U-14 C)-labelled straw and (U-13 C)-labelled glucose in soils of contrasting pH and heavy metal status
    • Witter E, Dahlin S (1995) Microbial utilization of (U-14 C)-labelled straw and (U-13 C)-labelled glucose in soils of contrasting pH and heavy metal status. Soil Biol Biochem 27: 1507-1516.
    • (1995) Soil Biol Biochem , vol.27 , pp. 1507-1516
    • Witter, E.1    Dahlin, S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.