Molecular analysis of the biomass of a fluidized bed reactor treating synthetic vinasse at anaerobic and micro-aerobic conditions

Applied Microbiology and Biotechnology

Volumn 93, Issue 5, 2012, Pages 2181-2191

  Rodríguez, Elisa ^a   Lopes, Alexandre ^a,b   Fdz Polanco, María ^a   Stams, Alfons J M ^c   García Encina, Pedro A ^a  

^a UNIVERSITY OF VALLADOLID   (Spain)

^b FEDERAL UNIVERSITY OF CEARÁ   (Brazil)

^c WAGENINGEN UNIVERSITY   (Netherlands)

Author keywords

DGGE; Methanogenesis; Micro aerobic; Sulfate reducing bacteria; Sulfur oxidizing bacteria

Indexed keywords

DGGE; METHANOGENESIS; MICRO-AEROBIC; SULFATE REDUCING BACTERIA; SULFUR OXIDIZING BACTERIA;

CHEMICAL REACTORS; ELECTROPHORESIS; FLUID CATALYTIC CRACKING; GLUCOSE; HYDROGEN; METHANOGENS; OXYGEN; REACTION INTERMEDIATES; REACTOR OPERATION; SULFUR; SULFUR COMPOUNDS; VOLATILE FATTY ACIDS;

AEROBIC BACTERIA;

BETAINE; BIOGAS; FATTY ACID; GLUCOSE; OXYGEN; RNA 16S; SUGAR; SULFATE; SULFUR;

BIODEGRADATION; BIOMASS; BIOREACTOR; CONCENTRATION (COMPOSITION); ELECTROKINESIS; ENZYME ACTIVITY; FATTY ACID; FERMENTATION; FLUIDIZATION; GEL; GLUCOSE; METHANOGENESIS; MICROBIAL COMMUNITY; MOLECULAR ANALYSIS; OXIC CONDITIONS; OXYGEN; PHYLOGENETICS; SUBSTRATE; SULFATE; SULFATE-REDUCING BACTERIUM; SULFUR;

AEROBIC REACTOR; ANAEROBIC REACTOR; ARCHAEBACTERIUM; ARTICLE; BACTERIAL GROWTH; BACTERIUM DETECTION; CONCENTRATION RESPONSE; DENATURING GRADIENT GEL ELECTROPHORESIS; DESULFOVIBRIO; FERMENTATION; FLUIDIZED BED REACTOR; GAMMAPROTEOBACTERIA; METHANOBACTERIUM; METHANOGEN; METHANOMETHYLOVORANS; METHANOSAETA; MICROBIAL BIOMASS; MICROBIAL DEGRADATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; SULFATE REDUCING BACTERIUM; SULFIDE OXIDIZING BACTERIUM; SYMBIOSIS; SYNTROPHY; VINASSE; WOLINELLA SUCCINOGENES;

AEROBIOSIS; ANAEROBIOSIS; ARCHAEA; BACTERIA; BIOMASS; BIOREACTORS; BIOTA; CARBON; DENATURING GRADIENT GEL ELECTROPHORESIS; ENERGY METABOLISM; MOLECULAR SEQUENCE DATA; OXIDATION-REDUCTION; SEQUENCE ANALYSIS, DNA; SULFUR COMPOUNDS;

BACTERIA (MICROORGANISMS); DESULFOVIBRIO; METHANOBACTERIUM; METHANOMETHYLOVORANS; METHANOSAETA; PROTEOBACTERIA; WOLINELLA SUCCINOGENES;

EID: 84857916494     PISSN: 01757598     EISSN: 14320614     Source Type: Journal    
DOI: 10.1007/s00253-011-3529-3     Document Type: Article

References (26)

1. Angelidaki I, Alves M, Bolzonella D, Borzacconi L, Campos JL, Guwy AJ, Kalyuzhnyi S, Jenicek P, van Lier JB (2009) Defining the biomethane potential (BMP) of solid organic wastes and energy crops: a proposed protocol for batch assays. Water Sci Technol 59(5):927-934
2. Ben-Amor K, Heilig H, Smidt H, Vaughan EE, Abee T, de Vos WM (2005) Genetic diversity of viable, injured, and dead fecal bacteria assessed by fluorescence-activated cell sorting and 16S rRNA gene analysis. Appl Environ Microbiol 71:4679-4689 (Pubitemid 41129525)
3. Castro HF, Williams NH, Ogram A (2000) Phylogeny of sulfatereducing bacteria. FEMS Microbiol Ecol 31:1-9
4. Clesceri LS, Greenberg AE, Eaton AD (1998) Standard methods for the examination of water and wastewater. American Public Health Association, Washington, DC
5. Colleran E, Finnegan S, Lens P (1995) Anaerobic treatment of sulfate-containing waste streams. Antonie van Leeuwenhoek 67:29-46
6. de Menezes TJB (1989) The treatment and utilization of alcohol stillage. In: Wise DL (ed) International Biosystems, vol III. CRC Press, Boca Raton, FL, pp 1-14
7. Diekert G, Wohlfarth G (1994) Metabolism of homoacetogens. Antonie van Leeuwenhoek 66:209-221
8. Grosskopf R, Janssen PH, Liesack W (1998) Diversity and structure of the methanogenic community in anoxic rice paddy soil microcosms as examined by cultivation and direct 16S rRNA gene sequence retrieval. Appl Environ Microbiol 64:960-969 (Pubitemid 28108471)
9. Gupta A, Flora JRV, Gupta M, Sayles GD, Suidan MT (1994) Methanogenesis and sulfate reduction in chemostats-I. Kinetic studies and experiments. Water Res 28:781-793 (Pubitemid 24092165)
10. Janssen AJH, Lettinga G, de Keizer A (1999) Removal of hydrogen sulfide from wastewater and waste gases by biological conversion to elemental sulfur: colloidal and interfacial aspects of biologically produced sulfur particles. Colloids Surf A 151:389-397 (Pubitemid 29119211)
11. Kobayashi T, Li Y-Y, Kubota K, Harada H, Maeda T, Yu H-Q (2011) Characterization of sulfide-oxidizing microbial mats developed inside a full-scale anaerobic digester employing biological desulfurization. Appl Microbiol Biotechnol:1-11. doi:10.1007/ s00253-011-3445-6
12. Kumar S, Tamura K, Nei M (1994) MEGA: Molecular Evolutionary Genetics Analysis software for microcomputers. Comput Appl Biosci 10:189-191 (Pubitemid 24125441)
13. Laanbroek HJ, Geerligs HJ, Sijtsma L, Veldkamp H (1984) Competition for sulfate and ethanol among Desulfobacter, Desulfobulbus, and Desulfovibrio species isolated from intertidal sediments. Appl Environ Microbiol 47:329-334 (Pubitemid 14184988)
14. Lane D (1991) 16S/23S rRNA sequencing. In: Stackebrandt E, Goodfellow M (eds) Nucleic acid techniques in bacterial systematics. Wiley and Sons Ltd, Chichester, UK, pp 115-175
15. Leclerc M, Delgenes JP, Godon JJ (2004) Diversity of the archaeal community in 44 anaerobic digesters as determined by single strand conformation polymorphism analysis and 16S rDNA sequencing. Environ Microbiol 6:809-819
16. McCartney DM, Oleskiewicz JA (1991) Sulfide inhibition of anaerobic degradation of lactate and acetate. Water Res 25:203-209
17. McGinnis S, Madden TL (2004) BLAST: at the core of a powerful and diverse set of sequence analysis tools. Nucleic Acids Res 32: W20-W25 (Pubitemid 38997292)
18. Muyzer G, Dewaal EC, Uitterlinden AG (1993) Profiling of complex microbial-populations by denaturing gradient gel-electrophoresis analysis of polymerase chain reaction-amplified genes-coding for 16S ribosomal-RNA. Appl Environ Microbiol 59:695-700 (Pubitemid 23072343)
19. Muyzer G, Stams AJM (2008) The ecology and biotechnology of sulfate-reducing bacteria. Nat Rev Microbiol 6:441-454
20. Nawrocki EP, Kolbe DL, Eddy SR (2009) Infernal 1.0: inference of RNA alignments. Bioinformatics 25(10):1335-1337
21. Nielsen MB, Kjeldsen KU, Ingvorsen K (2006) Desulfitibacter alkalitolerans gen. nov., sp. nov., an anaerobic, alkalitolerant, sulfite-reducing bacterium isolated from a district heating plant. Int J Syst Evol Microbiol 56:2831-2836 (Pubitemid 44970994)
22. Nübel U, Engelen B, Felske A, Snaidr J, Wieshuber A, Amann RI, Ludwig W, Backhaus H (1996) Sequence heterogeneities of genes encoding 16S rRNAs in Paenibacillus polymyxa detected by temperature gradient gel electrophoresis. J Bacteriol 178:5636-5643 (Pubitemid 26327663)
23. O'Flaherty V, Lens P, Leahy B, Colleran E (1998) Long-term competition between sulfate-reducing and methane-producing bacteria during full-scale anaerobic treatment of citric acid production wastewater. Water Res 32:815-825 (Pubitemid 28075226)
24. Omil F, Lens P, Hulshoff Pol L, Lettinga G (1996) Effect of upward velocity and sulfide concentration on volatile fatty acid degradation in a sulfidogenic granular sludge reactor. Process Biochem 31:699-710 (Pubitemid 27063369)
25. Oude Elferink SJWH, Maas RN, Harmsen HJM, Stams AJM (1995) Desulforhabdus amnigenus gen. nov., sp. nov., a sulfate reducer isolated from anaerobic granular sludge. Arch Microbiol 164:119-124
26. Rivers-Singleton JR (1993) The sulfate-reducing bacteria: an overview. In: Odom JM, Rivers-Singleton JR (eds) The sulfatereducing bacteria: contemporary perspectives. Springer, New York, pp 1-20