Direct interaction of the N-terminal domain of ribosomal protein S1 with protein S2 in Escherichia coli

PLoS ONE

Volumn 7, Issue 3, 2012, Pages

  Byrgazov, Konstantin ^a   Manoharadas, Salim ^a   Kaberdina, Anna C ^a   Vesper, Oliver ^a   Moll, Isabella ^a  

^a UNIVERSITY OF VIENNA   (Austria)

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; RIBOSOME PROTEIN; RIBOSOME PROTEIN S1; RIBOSOME PROTEIN S2; UNCLASSIFIED DRUG; RIBOSOMAL PROTEIN S1; RIBOSOMAL PROTEIN S2;

AMINO TERMINAL SEQUENCE; ARTICLE; BACTERIAL GROWTH; CONTROLLED STUDY; ESCHERICHIA COLI; GRAM NEGATIVE BACTERIUM; NONHUMAN; PROTEIN BINDING; PROTEIN DOMAIN; PROTEIN LOCALIZATION; PROTEIN PROTEIN INTERACTION; PROTEIN STRUCTURE; TRANSLATION INITIATION; CHEMICAL STRUCTURE; CHEMISTRY; GENETICS; METABOLISM; PROTEIN CONFORMATION; PROTEIN SYNTHESIS; RIBOSOME;

ESCHERICHIA COLI; NEGIBACTERIA;

ESCHERICHIA COLI; MODELS, MOLECULAR; PROTEIN BINDING; PROTEIN BIOSYNTHESIS; PROTEIN CONFORMATION; PROTEIN INTERACTION DOMAINS AND MOTIFS; RIBOSOMAL PROTEINS; RIBOSOMES;

EID: 84857880082     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0032702     Document Type: Article

References (48)

1. Gualerzi CO, Pon CL, (1990) Initiation of mRNA translation in prokaryotes. Biochemistry 29: 5881-5889.
2. Sorensen MA, Fricke J, Pedersen S, (1998) Ribosomal protein S1 is required for translation of most, if not all, natural mRNAs in Escherichia coli in vivo. J Mol Biol 280: 561-569.
3. Szer W, Hermoso JM, Leffler S, (1975) Ribosomal protein S1 and polypeptide chain initiation in bacteria. Proc Natl Acad Sci U S A 72: 2325-2329.
4. van Dieijen G, van Knippenberg PH, van Duin J, (1976) The specific role of ribosomal protein S1 in the recognition of native phage RNA. Eur J Biochem 64: 511-518.
5. Boni IV, Isaeva DM, Musychenko ML, Tzareva NV, (1991) Ribosome-messenger recognition: mRNA target sites for ribosomal protein S1. Nucleic Acids Res 19: 155-162.
6. Bear DG, Ng R, Van Derveer D, Johnson NP, Thomas G, et al. (1976) Alteration of polynucleotide secondary structure by ribosomal protein S1. Proc Natl Acad Sci USA 73: 1824-1828.
7. Thomas JO, Kolb A, Szer W, (1978) Structure of single-stranded nucleic acids in the presence of ribosomal protein S1. J Mol Biol 123: 163-176.
8. de Smit MH, van Duin J, (1994) Control of translation by mRNA secondary structure in Escherichia coli. A quantitative analysis of literature data. J Mol Biol 244: 144-150.
9. Tedin K, Resch A, Blasi U, (1997) Requirements for ribosomal protein S1 for translation initiation of mRNAs with and without a 5′ leader sequence. Mol Microbiol 25: 189-199.
10. Moll I, Grill S, Grundling A, Blasi U, (2002) Effects of ribosomal proteins S1, S2 and the DeaD/CsdA DEAD-box helicase on translation of leaderless and canonical mRNAs in Escherichia coli. Mol Microbiol 44: 1387-1396.
11. Bycroft M, Hubbard TJ, Proctor M, Freund SM, Murzin AG, (1997) The solution structure of the S1 RNA binding domain: a member of an ancient nucleic acid-binding fold. Cell 88: 235-242.
12. McGinness KE, Sauer RT, (2004) Ribosomal protein S1 binds mRNA and tmRNA similarly but plays distinct roles in translation of these molecules. Proc Natl Acad Sci USA 101: 13454-13459.
13. Subramanian AR, Rienhardt P, Kimura M, Suryanarayana T, (1981) Fragments of ribosomal protein S1 and its mutant form m1-S1. Localization of nucleic-acid-binding domain in the middle region of S1. Eur J Biochem 119: 245-249.
14. Guerrier-Takada C, Subramanian AR, Cole PE, (1983) The activity of discrete fragments of ribosomal protein S1 in Q beta replicase function. J Biol Chem 258: 13649-13652.
15. Okada T, Wower IK, Wower J, Zwieb CW, Kimura M, (2004) Contribution of the second OB fold of ribosomal protein S1 from Escherichia coli to the recognition of TmRNA. Biosci Biotechnol Biochem 68: 2319-2325.
16. Walleczek J, Albrecht-Ehrlich R, Stoffler G, Stoffler-Meilicke M, (1990) Three-dimensional localization of the NH2- and carboxyl-terminal domain of ribosomal protein S1 on the surface of the 30 S subunit from Escherichia coli. J Biol Chem 265: 11338-11344.
17. Aliprandi P, Sizun C, Perez J, Mareuil F, Caputo S, et al. (2008) S1 ribosomal protein functions in translation initiation and ribonuclease RegB activation are mediated by similar RNA-protein interactions. J Biol Chem 283: 13289-13301.
18. Salah P, Bisaglia M, Aliprandi P, Uzan M, Sizun C, et al. (2009) Probing the relationship between Gram-negative and Gram-positive S1 proteins by sequence analysis. Nucleic Acids Res 37: 5578-5588.
19. Boni IV, Artamonova VS, Tzareva NV, Dreyfus M, (2001) Non-canonical mechanism for translational control in bacteria: synthesis of ribosomal protein S1. EMBO J 20: 4222-4232.
20. Laughrea M, Moore PB, (1978) Ribosomal components required for binding protein S1 to the 30 S subunit of Escherichia coli. J Mol Biol 122: 109-112.
21. Boileau G, Sommer A, Traut RR, (1981) Identification of proteins at the binding site for protein S1 in 70 S ribosomes and 30 S subunits by cross-linking with 2-iminothiolane. J Biol Chem 256: 8222-8227.
22. Sengupta J, Agrawal RK, Frank J, (2001) Visualization of protein S1 within the 30 S ribosomal subunit and its interaction with messenger RNA. Proc Natl Acad Sci USA 98: 11991-11996.
23. Bollen A, Lathe R, Herzog A, Denicourt D, Lecocq JP, et al. (1979) A conditionally lethal mutation of Escherichia coli affecting the gene coding for ribosomal protein S2 (rpsB). J Mol Biol 132: 219-233.
24. Sukhodolets MV, Garges S, (2003) Interaction of Escherichia coli RNA polymerase with the ribosomal protein S1 and the Sm-like ATPase Hfq. Biochemistry 42: 8022-8034.
25. Aseev LV, Levandovskaya AA, Tchufistova LS, Scaptsova NV, Boni IV, (2008) A new regulatory circuit in ribosomal protein operons: S2-mediated control of the rpsB-tsf expression in vivo. RNA 14: 1882-1894.
26. Sillers IY, Moore PB, (1981) Position of protein S1 in the 30 S ribosomal subunit of Escherichia coli. J Mol Biol 153: 761-780.
27. Ederth J, Mandava CS, Dasgupta S, Sanyal S, (2009) A single-step method for purification of active His-tagged ribosomes from a genetically engineered Escherichia coli. Nucleic Acids Res 37: e15.
28. Grill S, Gualerzi CO, Londei P, Blasi U, (2000) Selective stimulation of translation of leaderless mRNA by initiation factor 2: evolutionary implications for translation. EMBO J 19: 4101-4110.
29. Brodersen DE, Clemons WM Jr, Carter AP, Wimberly BT, Ramakrishnan V, (2002) Crystal structure of the 30 S ribosomal subunit from Thermus thermophilus: structure of the proteins and their interactions with 16 S RNA. J Mol Biol 316: 725-768.
30. Yusupova G, Jenner L, Rees B, Moras D, Yusupov M, (2006) Structural basis for messenger RNA movement on the ribosome. Nature 444: 391-394.
31. Kaminishi T, Wilson DN, Takemoto C, Harms JM, Kawazoe M, et al. (2007) A snapshot of the 30 S ribosomal subunit capturing mRNA via the Shine-Dalgarno interaction. Structure 15: 289-297.
32. Boni IV, Zlatkin IV, Budowsky EI, (1982) Ribosomal protein S1 associates with Escherichia coli ribosomal 30-S subunit by means of protein-protein interactions. Eur J Biochem 121: 371-376.
33. Subramanian AR, (1983) Structure and functions of ribosomal protein S1. Prog Nucleic Acid Res Mol Biol 28: 101-142.
34. Vellanoweth RL, Rabinowitz JC, (1992) The influence of ribosome-binding-site elements on translational efficiency in Bacillus subtilis and Escherichia coli in vivo. Mol Microbiol 6: 1105-1114.
35. Saguy M, Gillet R, Skorski P, Hermann-Le Denmat S, Felden B, (2007) Ribosomal protein S1 influences trans-translation in vitro and in vivo. Nucleic Acids Res 35: 2368-2376.
36. Qi H, Shimizu Y, Ueda T, (2007) Ribosomal protein S1 is not essential for the trans-translation machinery. J Mol Biol 368: 845-852.
37. Komine Y, Kitabatake M, Yokogawa T, Nishikawa K, Inokuchi H, (1994) A tRNA-like structure is present in 10Sa RNA, a small stable RNA from Escherichia coli. Proc Natl Acad Sci USA 91: 9223-9227.
38. Laursen BS, Sorensen HP, Mortensen KK, Sperling-Petersen HU, (2005) Initiation of protein synthesis in bacteria. Microbiol Mol Biol Rev 69: 101-123.
39. Potapov AP, Subramanian AR, (1992) Effect of E. coli ribosomal protein S1 on the fidelity of the translational elongation step: reading and misreading of poly(U) and poly(dT). Biochem Int 27: 745-753.
40. van Dieijen G, Zipori P, van Prooijen W, van Duin J, (1978) Involvement of ribosomal protein S1 in the assembly of the initiation complex. Eur J Biochem 90: 571-580.
41. Vesper O, Amitai S, Belitsky M, Byrgazov K, Kaberdina AC, et al. (2011) Selective Translation of Leaderless mRNAs by Specialized Ribosomes Generated by MazF in Escherichia coli. Cell 147: 147-157.
42. Delvillani F, Papiani G, Deho G, Briani F, (2011) S1 ribosomal protein and the interplay between translation and mRNA decay. Nucleic Acids Res 39: 7702-7715.
43. Miller JH, (1972) Experiments in Molecular Genetics Cold Spring Harbor, NY Cold Spring Harbor Laboratory Press.
44. Kaberdina AC, Szaflarski W, Nierhaus KH, Moll I, (2009) An unexpected type of ribosomes induced by kasugamycin: a look into ancestral times of protein synthesis? Mol Cell 33: 227-236.
45. Suryanarayana T, Subramanian AR, (1983) An essential function of ribosomal protein S1 in messenger ribonucleic acid translation. Biochemistry 22: 2715-2719.
46. Porollo A, Meller J, (2007) Versatile annotation and publication quality visualization of protein complexes using POLYVIEW-3D. BMC Bioinformatics 8: 316.
47. DeLano MC, (2002) The PyMOL Molecular System (San Carlos, CA: DeLano Scientific).
48. Schuwirth BS, Borovinskaya MA, Hau CW, Zhang W, Vila-Sanjurjo A, et al. (2005) Structures of the bacterial ribosome at 3.5 A resolution. Science 310: 827-834.