Complete genome sequence of the thermophilic bacterium geobacillus thermoleovorans CCB_US3_UF5

Journal of Bacteriology

Volumn 194, Issue 5, 2012, Pages 1239-1239

  Sakaff, Muhd Khairul Luqman Muhd ^a   Rahman, Ahmad Yamin Abdul ^a   Saito, Jennifer A ^a   Hou, Shaobin ^b   Alam, Maqsudul ^a  

^a SCHOOL OF PHYSICS   (Malaysia)

^b UNIVERSITY OF HAWAII   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; GENOMIC DNA;

BACTERIAL GENETICS; BACTERIUM ISOLATION; BIOTECHNOLOGY; CHROMOSOME; GENE SEQUENCE; GENETIC CODE; GEOBACILLUS; GEOBACILLUS KAUSTOPHILUS; GEOBACILLUS THERMOLEOVORANS; MALAYSIA; MARINE ENVIRONMENT; NONHUMAN; NOTE; NUCLEOTIDE SEQUENCE; OPERON; PRIORITY JOURNAL; RNA GENE; SYNTENY; THERMOPHILIC BACTERIUM;

DNA, BACTERIAL; GENOME, BACTERIAL; GEOBACILLUS; HOT SPRINGS; MALAYSIA; MOLECULAR SEQUENCE DATA; SEQUENCE ANALYSIS, DNA;

BACTERIA (MICROORGANISMS); GEOBACILLUS KAUSTOPHILUS HTA426; GEOBACILLUS THERMOLEOVORANS;

EID: 84857832322     PISSN: 00219193     EISSN: 10985530     Source Type: Journal    
DOI: 10.1128/JB.06580-11     Document Type: Note

References (15)

1. Abd Rahman RN, Leow TC, Salleh AB, Basri M. 2007. Geobacillus zalihae sp. nov., a thermophilic lipolytic bacterium isolated from palm oil mill effluent in Malaysia. BMC Microbiol. 7:77.
2. Altschul SF, et al. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25:3389-3402.
3. Alves JM, Buck GA. 2007. Automated system for gene annotation and metabolic pathway reconstruction using general sequence databases. Chem. Biodivers. 4:2593-2602.
4. Delcher AL, Bratke KA, Powers EC, Salzberg SL. 2007. Identifying bacterial genes and endosymbiont DNA with Glimmer. Bioinformatics 23:673-679.
5. Feng L, et al. 2007. Genome and proteome of long-chain alkane degrading Geobacillus thermodenitrificans NG80-2 isolated from a deepsubsurface oil reservoir. Proc. Natl. Acad. Sci. U. S. A. 104:5602-5607.
6. Fulton J, Douglas T, Young M. 2009. Isolation of viruses from high temperature environments. Methods Mol. Biol. 501:43-54.
7. Lagesen K, et al. 2007. RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res. 35:3100-3108.
8. Li H, Durbin R. 2009. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25:1754-1760.
9. Lowe TM, Eddy SR. 1997. tRNAscan-SE: a program for improved detection of transferRNAgenes in genomic sequence. Nucleic Acids Res. 25:955-964.
10. Marchler-Bauer A, et al. 2011. CDD: a conserved domain database for the functional annotation of proteins. Nucleic Acids Res. 39:D225-D229.
11. McMullan G, et al. 2004. Habitat, applications and genomics of the aerobic, thermophilic genus Geobacillus. Biochem. Soc. Trans. 32:214-217.
12. Nazina TN, et al. 2001. Taxonomic study of aerobic thermophilic bacilli: descriptions of Geobacillus subterraneus gen nov., sp., nov. and Geobacillus uzenensis sp. nov. from petroleum reservoirs and transfer of Bacillus stearothermophilus, Bacillus thermocatenulatus, Bacillus thermoleovorans, Bacillus kautophilus, Bacillus thermoglucosidasius and Bacillus therdenitrificans to Geobacillus as the new combinations G. stearothermophilus, G thermocatenulatus, G.thermoleovorans, G kaustophilus, G. thermoglucosidasius and G. thermodenitrificans. Int. J. Syst. Evol. Microbiol. 51:433-446.
13. Ren Y, Strobel G, Sears J, Park M. 2010. Geobacillus sp., a thermophilic soil bacterium producing volatile antibiotics. Microb. Ecol. 60:130-136.
14. Stewart AC, Osborne B, Read TD. 2009. DIYA: a bacterial annotation pipeline for any genomics lab. Bioinformatics 25:962-963.
15. Suzek BE, Huang H, McGarvey P, Mazumder R, Wu CH. 2007. UniRef: comprehensive and non-redundant UniProt reference clusters. Bioinformatics 23:1282-1288.