-
1
-
-
8844237615
-
Polyubiquitin chains: Polymeric protein signals
-
DOI 10.1016/j.cbpa.2004.09.009, PII S1367593104001413
-
Pickart, C.M. & Fushman, D. Polyubiquitin chains: polymeric protein signals. Curr. Opin. Chem. Biol. 8, 610-616 (2004). (Pubitemid 39535722)
-
(2004)
Current Opinion in Chemical Biology
, vol.8
, Issue.6
, pp. 610-616
-
-
Pickart, C.M.1
Fushman, D.2
-
2
-
-
63049125531
-
Quantitative proteomics reveals the function of unconventional ubiquitin chains in proteasomal degradation
-
Xu, P. et al. Quantitative proteomics reveals the function of unconventional ubiquitin chains in proteasomal degradation. Cell 137, 133-145 (2009).
-
(2009)
Cell
, vol.137
, pp. 133-145
-
-
Xu, P.1
-
3
-
-
70349441058
-
Ubiquitin-binding domains-from structures to functions
-
Dikic, I., Wakatsuki, S. & Walters, K.J. Ubiquitin-binding domains-from structures to functions. Nat. Rev. Mol. Cell Biol. 10, 659-671 (2009).
-
(2009)
Nat. Rev. Mol. Cell Biol.
, vol.10
, pp. 659-671
-
-
Dikic, I.1
Wakatsuki, S.2
Walters, K.J.3
-
4
-
-
44649101850
-
Atypical ubiquitin chains: New molecular signals
-
Ikeda, F. & Dikic, I. Atypical ubiquitin chains: new molecular signals. EMBO Rep. 9, 536-542 (2008).
-
(2008)
EMBO Rep.
, vol.9
, pp. 536-542
-
-
Ikeda, F.1
Dikic, I.2
-
5
-
-
0028146192
-
Inhibition of proteolysis and cell cycle progression in a multiubiquitination-deficient yeast mutant
-
Finley, D. et al. Inhibition of proteolysis and cell cycle progression in a multiubiquitination-deficient yeast mutant. Mol. Cell. Biol. 14, 5501-5509 (1994). (Pubitemid 24235979)
-
(1994)
Molecular and Cellular Biology
, vol.14
, Issue.8
, pp. 5501-5509
-
-
Finley, D.1
Sadis, S.2
Monia, B.P.3
Boucher, P.4
Ecker, D.J.5
Crooke, S.T.6
Chau, V.7
-
6
-
-
0028847989
-
A ubiquitin mutant with specific defects in DNA repair and multiubiquitination
-
Spence, J., Sadis, S., Haas, A.L. & Finley, D. A ubiquitin mutant with specific defects in DNA repair and multiubiquitination. Mol. Cell. Biol. 15, 1265-1273 (1995).
-
(1995)
Mol. Cell. Biol.
, vol.15
, pp. 1265-1273
-
-
Spence, J.1
Sadis, S.2
Haas, A.L.3
Finley, D.4
-
7
-
-
70350015537
-
A ubiquitin replacement strategy in human cells reveals distinct mechanisms of IKK activation by TNFalpha and IL-1beta
-
Xu, M., Skaug, B., Zeng, W. & Chen, Z.J. A ubiquitin replacement strategy in human cells reveals distinct mechanisms of IKK activation by TNFalpha and IL-1beta. Mol. Cell 36, 302-314 (2009).
-
(2009)
Mol. Cell
, vol.36
, pp. 302-314
-
-
Xu, M.1
Skaug, B.2
Zeng, W.3
Chen, Z.J.4
-
8
-
-
1542344435
-
Proteasomes and their kin: Proteases in the machine age
-
DOI 10.1038/nrm1336
-
Pickart, C.M. & Cohen, R.E. Proteasomes and their kin: proteases in the machine age. Nat. Rev. Mol. Cell Biol. 5, 177-187 (2004). (Pubitemid 38325799)
-
(2004)
Nature Reviews Molecular Cell Biology
, vol.5
, Issue.3
, pp. 177-187
-
-
Pickart, C.M.1
Cohen, R.E.2
-
9
-
-
0037068455
-
RAD6-dependent DNA repair is linked to modification of PCNA by ubiquitin and SUMO
-
DOI 10.1038/nature00991
-
Hoege, C., Pfander, B., Moldovan, G.L., Pyrowolakis, G. & Jentsch, S. RAD6-dependent DNA repair is linked to modification of PCNA by ubiquitin and SUMO. Nature 419, 135-141 (2002). (Pubitemid 35025438)
-
(2002)
Nature
, vol.419
, Issue.6903
, pp. 135-141
-
-
Hoege, C.1
Pfander, B.2
Moldovan, G.-L.3
Pyrowolakis, G.4
Jentsch, S.5
-
10
-
-
75549087964
-
The ubiquitin landscape at DNA double-strand breaks
-
Messick, T.E. & Greenberg, R.A. The ubiquitin landscape at DNA double-strand breaks. J. Cell Biol. 187, 319-326 (2009).
-
(2009)
J. Cell Biol.
, vol.187
, pp. 319-326
-
-
Messick, T.E.1
Greenberg, R.A.2
-
11
-
-
77956410115
-
Selective autophagy: Ubiquitin-mediated recognition and beyond
-
Kraft, C., Peter, M. & Hofmann, K. Selective autophagy: ubiquitin-mediated recognition and beyond. Nat. Cell Biol. 12, 836-841 (2010).
-
(2010)
Nat. Cell Biol.
, vol.12
, pp. 836-841
-
-
Kraft, C.1
Peter, M.2
Hofmann, K.3
-
12
-
-
77950857969
-
The ubiquitin code of yeast permease trafficking
-
Lauwers, E., Erpapazoglou, Z., Haguenauer-Tsapis, R. & Andre, B. The ubiquitin code of yeast permease trafficking. Trends Cell Biol. 20, 196-204 (2010).
-
(2010)
Trends Cell Biol.
, vol.20
, pp. 196-204
-
-
Lauwers, E.1
Erpapazoglou, Z.2
Haguenauer-Tsapis, R.3
Andre, B.4
-
13
-
-
78650903043
-
Expanding role of ubiquitination in NF-kappaB signaling
-
Liu, S. & Chen, Z.J. Expanding role of ubiquitination in NF-kappaB signaling. Cell Res. 21, 6-21 (2011).
-
(2011)
Cell Res.
, vol.21
, pp. 6-21
-
-
Liu, S.1
Chen, Z.J.2
-
14
-
-
62549161305
-
Linkage-specific avidity defines the lysine 63-linked polyubiquitin-binding preference of rap80
-
Sims, J.J. & Cohen, R.E. Linkage-specific avidity defines the lysine 63-linked polyubiquitin-binding preference of rap80. Mol. Cell 33, 775-783 (2009).
-
(2009)
Mol. Cell
, vol.33
, pp. 775-783
-
-
Sims, J.J.1
Cohen, R.E.2
-
15
-
-
68249135262
-
Avid interactions underlie the Lys63-linked polyubiquitin binding specificities observed for UBA domains
-
Sims, J.J., Haririnia, A., Dickinson, B.C., Fushman, D. & Cohen, R.E. Avid interactions underlie the Lys63-linked polyubiquitin binding specificities observed for UBA domains. Nat. Struct. Mol. Biol. 16, 883-889 (2009).
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 883-889
-
-
Sims, J.J.1
Haririnia, A.2
Dickinson, B.C.3
Fushman, D.4
Cohen, R.E.5
-
16
-
-
0141625302
-
Solution structure of Vps27 UIM-ubiquitin complex important for endosomal sorting and receptor downregulation
-
DOI 10.1093/emboj/cdg471
-
Swanson, K.A., Kang, R.S., Stamenova, S.D., Hicke, L. & Radhakrishnan, I. Solution structure of Vps27 UIM-ubiquitin complex important for endosomal sorting and receptor downregulation. EMBO J. 22, 4597-4606 (2003). (Pubitemid 37162896)
-
(2003)
EMBO Journal
, vol.22
, Issue.18
, pp. 4597-4606
-
-
Swanson, K.A.1
Kang, R.S.2
Stamenova, S.D.3
Hicke, L.4
Radhakrishnan, I.5
-
17
-
-
79961000536
-
Protein standard absolute quantification (PSAQ) method for the measurement of cellular ubiquitin pools
-
Kaiser, S.E. et al. Protein standard absolute quantification (PSAQ) method for the measurement of cellular ubiquitin pools. Nat. Methods 8, 691-696 (2011).
-
(2011)
Nat. Methods
, vol.8
, pp. 691-696
-
-
Kaiser, S.E.1
-
18
-
-
77955516435
-
K11-linked polyubiquitination in cell cycle control revealed by a K11 linkage-specific antibody
-
Matsumoto, M.L. et al. K11-linked polyubiquitination in cell cycle control revealed by a K11 linkage-specific antibody. Mol. Cell 39, 477-484 (2010).
-
(2010)
Mol. Cell
, vol.39
, pp. 477-484
-
-
Matsumoto, M.L.1
-
19
-
-
49549117842
-
Ubiquitin chain editing revealed by polyubiquitin linkage-specific antibodies
-
Newton, K. et al. Ubiquitin chain editing revealed by polyubiquitin linkage-specific antibodies. Cell 134, 668-678 (2008).
-
(2008)
Cell
, vol.134
, pp. 668-678
-
-
Newton, K.1
-
20
-
-
75949130828
-
PINK1/Parkin-mediated mitophagy is dependent on VDAC1 and p62/SQSTM1
-
Geisler, S. et al. PINK1/Parkin-mediated mitophagy is dependent on VDAC1 and p62/SQSTM1. Nat. Cell Biol. 12, 119-131 (2010).
-
(2010)
Nat. Cell Biol.
, vol.12
, pp. 119-131
-
-
Geisler, S.1
-
21
-
-
78649300971
-
P62/SQSTM1 is required for Parkin-induced mitochondrial clustering but not mitophagy; VDAC1 is dispensable for both
-
Narendra, D., Kane, L.A., Hauser, D.N., Fearnley, I.M. & Youle, R.J. p62/SQSTM1 is required for Parkin-induced mitochondrial clustering but not mitophagy; VDAC1 is dispensable for both. Autophagy 6, 1090-1106 (2010).
-
(2010)
Autophagy
, vol.6
, pp. 1090-1106
-
-
Narendra, D.1
Kane, L.A.2
Hauser, D.N.3
Fearnley, I.M.4
Youle, R.J.5
-
22
-
-
58149314211
-
Parkin is recruited selectively to impaired mitochondria and promotes their autophagy
-
Narendra, D., Tanaka, A., Suen, D.F. & Youle, R.J. Parkin is recruited selectively to impaired mitochondria and promotes their autophagy. J. Cell Biol. 183, 795-803 (2008).
-
(2008)
J. Cell Biol.
, vol.183
, pp. 795-803
-
-
Narendra, D.1
Tanaka, A.2
Suen, D.F.3
Youle, R.J.4
-
23
-
-
0028073188
-
Stress resistance in Saccharomyces cerevisiae is strongly correlated with assembly of a novel type of multiubiquitin chain
-
Arnason, T. & Ellison, M.J. Stress resistance in Saccharomyces cerevisiae is strongly correlated with assembly of a novel type of multiubiquitin chain. Mol. Cell. Biol. 14, 7876-7883 (1994). (Pubitemid 24373536)
-
(1994)
Molecular and Cellular Biology
, vol.14
, Issue.12
, pp. 7876-7883
-
-
Arnason, T.1
Ellison, M.J.2
-
24
-
-
67650744586
-
The role of ubiquitin in NF-kappaB regulatory pathways
-
Skaug, B., Jiang, X. & Chen, Z.J. The role of ubiquitin in NF-kappaB regulatory pathways. Annu. Rev. Biochem. 78, 769-796 (2009).
-
(2009)
Annu. Rev. Biochem.
, vol.78
, pp. 769-796
-
-
Skaug, B.1
Jiang, X.2
Chen, Z.J.3
-
25
-
-
78650300883
-
C-IAP1 and UbcH5 promote K11-linked polyubiquitination of RIP1 in TNF signalling
-
Dynek, J.N. et al. c-IAP1 and UbcH5 promote K11-linked polyubiquitination of RIP1 in TNF signalling. EMBO J. 29, 4198-4209 (2010).
-
(2010)
EMBO J.
, vol.29
, pp. 4198-4209
-
-
Dynek, J.N.1
-
26
-
-
0141815764
-
TWEAK induces NF-κB2 p100 processing and long lasting NF-κB activation
-
DOI 10.1074/jbc.M304266200
-
Saitoh, T. et al. TWEAK induces NF-kappaB2 p100 processing and long lasting NF-kappaB activation. J. Biol. Chem. 278, 36005-36012 (2003). (Pubitemid 37139919)
-
(2003)
Journal of Biological Chemistry
, vol.278
, Issue.38
, pp. 36005-36012
-
-
Saitoh, T.1
Nakayama, M.2
Nakano, H.3
Yagita, H.4
Yamamoto, N.5
Yamaoka, S.6
-
27
-
-
77952912228
-
Tumor necrosis factor (TNF) signaling, but not TWEAK (TNF-like weak inducer of apoptosis)-triggered cIAP1 (cellular inhibitor of apoptosis protein 1) degradation, requires cIAP1 RING dimerization and E2 binding
-
Feltham, R. et al. Tumor necrosis factor (TNF) signaling, but not TWEAK (TNF-like weak inducer of apoptosis)-triggered cIAP1 (cellular inhibitor of apoptosis protein 1) degradation, requires cIAP1 RING dimerization and E2 binding. J. Biol. Chem. 285, 17525-17536 (2010).
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 17525-17536
-
-
Feltham, R.1
-
28
-
-
70449084692
-
Efficient protection and isolation of ubiquitylated proteins using tandem ubiquitin-binding entities
-
Hjerpe, R. et al. Efficient protection and isolation of ubiquitylated proteins using tandem ubiquitin-binding entities. EMBO Rep. 10, 1250-1258 (2009).
-
(2009)
EMBO Rep.
, vol.10
, pp. 1250-1258
-
-
Hjerpe, R.1
-
29
-
-
6044271376
-
Ubistatins inhibit proteasome-dependent degradation by binding the ubiquitin chain
-
DOI 10.1126/science.1100946
-
Verma, R. et al. Ubistatins inhibit proteasome-dependent degradation by binding the ubiquitin chain. Science 306, 117-120 (2004). (Pubitemid 39451952)
-
(2004)
Science
, vol.306
, Issue.5693
, pp. 117-120
-
-
Verma, R.1
Peters, N.R.2
D'Onofrio, M.3
Tochtrop, G.P.4
Sakamoto, K.M.5
Varadan, R.6
Zhang, M.7
Coffino, P.8
Fushman, D.9
Deshaies, R.J.10
King, R.W.11
-
30
-
-
58149520089
-
Analysis of nondegradative protein ubiquitylation with a monoclonal antibody specific for lysine-63-linked polyubiquitin
-
Wang, H. et al. Analysis of nondegradative protein ubiquitylation with a monoclonal antibody specific for lysine-63-linked polyubiquitin. Proc. Natl. Acad. Sci. USA 105, 20197-20202 (2008).
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 20197-20202
-
-
Wang, H.1
-
31
-
-
0037012847
-
Partitioning of lipid-modified monomeric GFPs into membrane microdomains of live cells
-
DOI 10.1126/science.1068539
-
Zacharias, D.A., Violin, J.D., Newton, A.C. & Tsien, R.Y. Partitioning of lipid-modified monomeric GFPs into membrane microdomains of live cells. Science 296, 913-916 (2002). (Pubitemid 34464897)
-
(2002)
Science
, vol.296
, Issue.5569
, pp. 913-916
-
-
Zacharias, D.A.1
Violin, J.D.2
Newton, A.C.3
Tsien, R.Y.4
-
32
-
-
28844462033
-
Controlled synthesis of polyubiquitin chains
-
DOI 10.1016/S0076-6879(05)99002-2, PII S0076687905990022, 2, Ubiquitin and Protein Degradation, Part B
-
Pickart, C.M. & Raasi, S. Controlled synthesis of polyubiquitin chains. Methods Enzymol. 399, 21-36 (2005). (Pubitemid 41772719)
-
(2005)
Methods in Enzymology
, vol.399
, pp. 21-36
-
-
Pickart, C.M.1
Raasi, S.2
-
33
-
-
77955417276
-
Lys11-linked ubiquitin chains adopt compact conformations and are preferentially hydrolyzed by the deubiquitinase Cezanne
-
Bremm, A., Freund, S.M. & Komander, D. Lys11-linked ubiquitin chains adopt compact conformations and are preferentially hydrolyzed by the deubiquitinase Cezanne. Nat. Struct. Mol. Biol. 17, 939-947 (2010).
-
(2010)
Nat. Struct. Mol. Biol.
, vol.17
, pp. 939-947
-
-
Bremm, A.1
Freund, S.M.2
Komander, D.3
-
34
-
-
79957839340
-
Adaptive informatics for multifactorial and high-content biological data
-
Millard, B.L., Niepel, M., Menden, M.P., Muhlich, J.L. & Sorger, P.K. Adaptive informatics for multifactorial and high-content biological data. Nat. Methods 8, 487-493 (2011).
-
(2011)
Nat. Methods
, vol.8
, pp. 487-493
-
-
Millard, B.L.1
Niepel, M.2
Menden, M.P.3
Muhlich, J.L.4
Sorger, P.K.5
-
35
-
-
33646036758
-
The response of human epithelial cells to TNF involves an inducible autocrine cascade
-
Janes, K.A. et al. The response of human epithelial cells to TNF involves an inducible autocrine cascade. Cell 124, 1225-1239 (2006).
-
(2006)
Cell
, vol.124
, pp. 1225-1239
-
-
Janes, K.A.1
-
36
-
-
28844441230
-
Cell signaling: A systems model of signaling identifies a molecular basis set for cytokine-induced apoptosis
-
DOI 10.1126/science.1116598
-
Janes, K.A. et al. A systems model of signaling identifies a molecular basis set for cytokine-induced apoptosis. Science 310, 1646-1653 (2005). (Pubitemid 41780781)
-
(2005)
Science
, vol.310
, Issue.5754
, pp. 1646-1653
-
-
Janes, K.A.1
Albeck, J.G.2
Gaudet, S.3
Sorger, P.K.4
Lauffenburger, D.A.5
Yaffe, M.B.6
|