The inheritance procedure: Multiple testing of tree-structured hypotheses

Statistical Applications in Genetics and Molecular Biology

Volumn 11, Issue 1, 2012, Pages

  Goeman, Jelle J ^a   Finos, Livio ^b  

^a LEIDEN UNIVERSITY MEDICAL CENTER   (Netherlands)

^b UNIVERSITY OF PADOVA   (Italy)

Author keywords

Hierarchical testing; Sequential testing

Indexed keywords

ALGORITHM; ARTICLE; BIOINFORMATICS; CHILD; CHROMOSOME; FAMILY; GENE; GENE EXPRESSION; GENOME; GENOMICS; HIERARCHICAL TESTING; HUMAN; HYPOTHESIS; INHERITANCE; MULTIPLE HYPOTHESIS TESTING; PARENT; SEQUENTIAL TESTING; SIBLING; STATISTICAL ANALYSIS; GENETIC DATABASE; GENETICS;

ALGORITHMS; CHROMOSOMES; DATABASES, GENETIC;

EID: 84857733494     PISSN: None     EISSN: 15446115     Source Type: Journal    
DOI: 10.1515/1544-6115.1554     Document Type: Article

References (17)

1. Bretz, F., Maurer, W., Brannath, W., and Posch, M. (2009). A graphical approach to sequentially rejective multiple test procedures. Statistics in Medicine, 28(4):586-604.
2. Burman, C. F., Sonesson, C., and Guilbaud, O. (2009). A recycling framework for the construction of bonferroni-based multiple tests. Statistics in Medicine, 28(5):739-761.
3. Commenges, D., Dartigues, J., Peytour, P., Puymirat, E., Henry, P., and Gagnon, M. (1989). A strategy for analysing multiple risk factors with application to cervical pain syndrome. Methods Inf Med., 28(1):14-19. (Pubitemid 19060269)
4. Ehm, W., Kornmeier, J., and Heinrich, S. (2010). Multiple testing along a tree. Electronic Journal of Statistics, 4:461-471.
5. Finner, H. and Roters, M. (2001). On the false discovery rate and expected type I errors. Biometrical Journal, 8:985-1005. (Pubitemid 33590295)
6. Goeman, J. and Búhlmann, P. (2007). Analyzing gene expression data in terms of gene sets: methodological issues. Bioinformatics, 23(8):980.
7. Goeman, J. J. and Mansmann, U. (2008). Multiple testing on the directed acyclic graph of gene ontology. Bioinformatics, 24(4):537-544. (Pubitemid 351256298)
8. Goeman, J. J. and Solari, A. (2010). The sequential rejection principle of familywise error control. Annals of Statistics, 38(6):3782-3810.
9. Goeman, J. J., van de Geer, S. A., de Kort, F., and van Houwelingen, J. C. (2004). A global test for groups of genes: testing association with a clinical outcome. Bioinformatics, 20(1):93-99. (Pubitemid 38088346)
10. Hummel, M., Meister, R., and Mansmann, U. (2008). GlobalANCOVA: exploration and assessment of gene group effects. Bioinformatics, 24(1):78.
11. Khatri, P. and Draghici, S. (2005). Ontological analysis of gene expression data: current tools, limitations, and open problems. Bioinformatics, 21(18):3587-3595. (Pubitemid 41264092)
12. Kim, K., Roquain, E., and van de Wiel, M. (2010). Spatial clustering of array CGH features in combination with hierarchical multiple testing. Statistical Applications in Genetics and Molecular Biology, 9(1):40.
13. Liang, K. and Nettleton, D. (2010). A hidden markov model approach to testing multiple hypotheses on a tree-transformed gene ontology graph. Journal of the American Statistical Association, 105(492):1444-1454.
14. Meinshausen, N. (2008). Hierarchical testing of variable importance. Biometrika, 95(2):265-278. (Pubitemid 351797208)
15. Modena, P., Lualdi, E., Facchinetti, F., Veltman, J., Reid, J. F., Minardi, S., Janssen, I., Giangaspero, F., Forni, M., Finocchiaro, G., Genitori, L., Giordano, F., Riccardi, R., Schoenmakers, E. F., Massimino, M., and Sozzi, G. (2006). Identification of Tumor-Specific Molecular Signatures in Intracranial Ependymoma and Association With Clinical Characteristics. Journal of Clinical Oncology, 24(33):5223-5233. (Pubitemid 46631366)
16. Shaffer, J. P. (1986). Modified sequentially rejective multiple test procedures. Journal of the American Statistical Association, 81(395):826-831.
17. Yekutieli, D. (2008). Hierarchical false discovery rate controlling methodology. Journal of the American Statistical Association, 103(481):309-316.