메뉴 건너뛰기




Volumn , Issue SUPPL.94, 2011, Pages

DamIP: Using mutant DNA adenine methyltransferase to study DNA-protein interactions in vivo

Author keywords

Chromatin immunoprecipitation; DamIP; DNA adenine methyltransferase; Immunoprecipitation; Transcription factor binding sites

Indexed keywords

AGAROSE; BUFFER; DNA ADENINE METHYLTRANSFERASE; DNA FRAGMENT; GENOMIC DNA; HYBRID PROTEIN; MUTANT PROTEIN; POLYCLONAL ANTIBODY;

EID: 84857650474     PISSN: 19343639     EISSN: 19343647     Source Type: Journal    
DOI: 10.1002/0471142727.mb2121s94     Document Type: Article
Times cited : (4)

References (21)
  • 2
    • 73949102040 scopus 로고    scopus 로고
    • The state-of-the-art of chromatin immunoprecipitation
    • Collas, P. 2009. The state-of-the-art of chromatin immunoprecipitation. Methods Mol. Biol. 567:1-25.
    • (2009) Methods Mol. Biol. , vol.567 , pp. 1-25
    • Collas, P.1
  • 4
    • 0036830559 scopus 로고    scopus 로고
    • In sights into negative modulation of E. coli replication initiation from the structure of SeqA-hemimethylated DNA complex
    • Guarne, A., Zhao, Q., Ghirlando, R., and Yang, W. 2002. In sights into negative modulation of E. coli replication initiation from the structure of SeqA-hemimethylated DNA complex. Nat. Struct. Biol. 9:839-843.
    • (2002) Nat. Struct. Biol. , vol.9 , pp. 839-843
    • Guarne, A.1    Zhao, Q.2    Ghirlando, R.3    Yang, W.4
  • 5
    • 18844448011 scopus 로고    scopus 로고
    • Transition from nonspecific to specific DNA interactions along the substrate-recognition pathway of dam methyltransferase
    • Horton, J.R., Liebert, K., Hattman, S., Jeltsch, A., and Cheng, X. 2005. Transition from nonspecific to specific DNA interactions along the substrate-recognition pathway of dam methyltransferase. Cell 121:349-361.
    • (2005) Cell , vol.121 , pp. 349-361
    • Horton, J.R.1    Liebert, K.2    Hattman, S.3    Jeltsch, A.4    Cheng, X.5
  • 6
    • 33646088737 scopus 로고    scopus 로고
    • Structure and substrate recognition of the Escherichia coli DNA adenine methyltransferase
    • Horton, J.R., Liebert, K., Bekes, M., Jeltsch, A., and Cheng, X. 2006. Structure and substrate recognition of the Escherichia coli DNA adenine methyltransferase. J. Mol. Biol. 358:559-570.
    • (2006) J. Mol. Biol. , vol.358 , pp. 559-570
    • Horton, J.R.1    Liebert, K.2    Bekes, M.3    Jeltsch, A.4    Cheng, X.5
  • 7
    • 0037234227 scopus 로고    scopus 로고
    • Genotyping of DNA using sequence-specific methyltransferases followed by immunochemical detection
    • Lopez, O.J., Quintanar, A., Padhye, N.V., and Nelson, M. 2003. Genotyping of DNA using sequence-specific methyltransferases followed by immunochemical detection. J. Immunoassay Immunochem. 24:11-28.
    • (2003) J. Immunoassay Immunochem. , vol.24 , pp. 11-28
    • Lopez, O.J.1    Quintanar, A.2    Padhye, N.V.3    Nelson, M.4
  • 11
    • 33645389087 scopus 로고    scopus 로고
    • N6-Methyladenine: The other methylated base of DNA
    • Ratel, D., Ravanat, J.L., Berger, F., and Wion, D. 2006a. N6-Methyladenine: The other methylated base of DNA. Bioessays 28:309-315.
    • (2006) Bioessays , vol.28 , pp. 309-315
    • Ratel, D.1    Ravanat, J.L.2    Berger, F.3    Wion, D.4
  • 12
    • 33646579552 scopus 로고    scopus 로고
    • Undetectable levels of N6-methyl adenine in mouse DNA: Cloning and analysis of PRED28, a gene coding for a putative mammalian DNA adenine methyltransferase
    • Ratel, D., Ravanat, J.L., Charles, M.P., Platet, N., Breuillaud, L., Lunardi, J., Berger, F., andWion, D. 2006b. Undetectable levels of N6-methyl adenine in mouse DNA: Cloning and analysis of PRED28, a gene coding for a putative mammalian DNA adenine methyltransferase. FEBS Lett. 580:3179-3184.
    • (2006) FEBS Lett , vol.580 , pp. 3179-3184
    • Ratel, D.1    Ravanat, J.L.2    Charles, M.P.3    Platet, N.4    Breuillaud, L.5    Lunardi, J.6    Berger, F.7    Wion, D.8
  • 15
    • 0028670846 scopus 로고
    • N6-Adenosinemethylation inmRNA: Substrate specificity and enzyme complexity
    • Rottman, F.M., Bokar, J.A., Narayan, P., Shamtbaugh, M.E., and Ludwiczak, R. 1994. N6-Adenosinemethylation inmRNA: Substrate specificity and enzyme complexity. Biochimie 76:1109-1114.
    • (1994) Biochimie , vol.76 , pp. 1109-1114
    • Rottman, F.M.1    Bokar, J.A.2    Narayan, P.3    Shamtbaugh, M.E.4    Ludwiczak, R.5
  • 16
    • 0034007256 scopus 로고    scopus 로고
    • Identification of in vivo DNA targets of chromatin proteins using tethered dammethyltransferase
    • van Steensel, B. and Henikoff, S. 2000. Identification of in vivo DNA targets of chromatin proteins using tethered dammethyltransferase. Nat. Biotechnol. 18:424-428.
    • (2000) Nat. Biotechnol. , vol.18 , pp. 424-428
    • van Steensel, B.1    Henikoff, S.2
  • 17
    • 0035093828 scopus 로고    scopus 로고
    • Chromatin profiling using targeted DNA adenine methyltransferase
    • van Steensel, B., Delrow, J., and Henikoff, S. 2001. Chromatin profiling using targeted DNA adenine methyltransferase. Nat. Genet. 27:304-308.
    • (2001) Nat. Genet. , vol.27 , pp. 304-308
    • van Steensel, B.1    Delrow, J.2    Henikoff, S.3
  • 18
    • 36749009061 scopus 로고    scopus 로고
    • Genome-wide, as opposed to local, antisilencing is mediated redundantly by the euchromatic factors Set1 and H2A.Z
    • Venkatasubrahmanyam, S., Hwang, W.W., Meneghini, M.D., Tong, A.H., and Madhani, H.D. 2007. Genome-wide, as opposed to local, antisilencing is mediated redundantly by the euchromatic factors Set1 and H2A.Z. Proc. Natl. Acad. Sci. U.S.A. 104:16609-16614.
    • (2007) Proc. Natl. Acad. Sci. U.S.A. , vol.104 , pp. 16609-16614
    • Venkatasubrahmanyam, S.1    Hwang, W.W.2    Meneghini, M.D.3    Tong, A.H.4    Madhani, H.D.5
  • 19
    • 23044514626 scopus 로고    scopus 로고
    • Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells
    • Weber, M., Davies, J.J., Wittig, D., Oakeley, E.J., Haase, M., Lam, W.L., and Schubeler, D. 2005. Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells. Nat. Genet. 37:853-862.
    • (2005) Nat. Genet. , vol.37 , pp. 853-862
    • Weber, M.1    Davies, J.J.2    Wittig, D.3    Oakeley, E.J.4    Haase, M.5    Lam, W.L.6    Schubeler, D.7
  • 20
    • 33646008874 scopus 로고    scopus 로고
    • N6-Methyladenine: An epigenetic signal for DNA-protein interactions
    • Wion, D. and Casadesus, J. 2006. N6-Methyladenine: An epigenetic signal for DNA-protein interactions. Nat. Rev. Microbiol. 4:183-192.
    • (2006) Nat. Rev. Microbiol. , vol.4 , pp. 183-192
    • Wion, D.1    Casadesus, J.2
  • 21
    • 77954976083 scopus 로고    scopus 로고
    • DamIP: A novel method to identify DNA binding sites in vivo Nucl
    • Xiao, R., Roman-Sanchez, R., and Moore, D.D. 2010. DamIP: A novel method to identify DNA binding sites in vivo Nucl. Recept. Signal 8:e003.
    • (2010) Recept. Signal , vol.8
    • Xiao, R.1    Roman-Sanchez, R.2    Moore, D.D.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.