On the use of mathematically-derived traits in QTL mapping

Molecular Breeding

Volumn 29, Issue 3, 2012, Pages 661-673

  Wang, Yu ^a,b   Li, Huihui ^b   Zhang, Luyan ^b   Lü, Wenyan ^a   Wang, Jiankang ^b  

^a SHENYANG AGRICULTURAL UNIVERSITY   (China)

^b INSTITUTE OF PLANT PROTECTION   (China)

Author keywords

Component trait; Derived trait; Power analysis; QTL mapping

Indexed keywords

PLANTS (BOTANY); POPULATION DISTRIBUTION;

COMPONENT TRAIT; DERIVED TRAIT; DETECTION POWER; EFFECT MODEL; FALSE DISCOVERY RATE; GENETIC EFFECTS; MAPPING POPULATIONS; POWER ANALYSIS; QUANTITATIVE TRAIT LOCI MAPPINGS; QUANTITATIVE TRAIT LOCUS;

GENES;

ZEA MAYS;

EID: 84857650002     PISSN: 13803743     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11032-011-9580-z     Document Type: Article

References (20)

1. Aluko G, Martinez C, Tohme J, Castano C, Bergman C, Oard LH (2004) QTL mapping of grain quality traits from the interspecific cross. Oryza sativa × O. glaberrima. Theor Appl Genet 109: 630-639.
2. Baker RJ (1986) Selection indices in plant breeding. CRC Press, Inc., Boca Raton, Florida.
3. Bernardo R (2002) Breeding for quantitative traits in plants. Stemma Press, Woodbury, MN.
4. Bolanos J, Edmeades GO (1996) The importance of the anthesis-silking interval in breeding for drought tolerance in tropical maize. Field Crop Res 48: 65-80.
5. Buckler SE, Holland JB, Bradbury PJ, Acharya CB, Brown PJ, Browne C, Ersoz E, Flint-Garcia S, Garcia A, Glaubitz JC, Goodman MM, Harjes C, Guill K, Kroon DE, Larsson S, Lepak NK, Li H, Mitchell SE, Pressoir G, Peiffer JA, Rosas MO, Rocheford TR, Romay MC, Romero S, Salvo S, Villeda HS, da Silva HS, Sun Q, Tian F, Upadyayula N, Ware D, Yates H, Yu J, Zhang Z, Kresovich S, McMullenet MD (2009) The genetic architecture of maize flowering time. Science 325: 714-718.
6. Falconer DS, Mackay TFC (1996) Introduction to quantitative genetics, 4th edn. Longman Group, Essex, UK.
7. Li J, Xiao J, Grandillo S, Jiang L, Wan Y, Deng Q, Yuan L, McCouch SR (2004) QTL detection for rice grain quality traits using an interspecific backcross population derived from cultivated Asian (O. sativa L.) and African (O. glaberrima S.) rice. Genome 47: 697-704.
8. Li H, Ye G, Wang J (2007) A modified algorithm for the improvement of composite interval mapping. Genetics 175: 361-374.
9. Li H, Ribaut JM, Li Z, Wang J (2008) Inclusive composite interval mapping (ICIM) for digenic epistasis of quantitative traits in biparental populations. Theor Appl Genet 116: 243-260.
10. Messmer R, Fracheboud Y, Bänziger M, Vargas M, Stamp P, Ribaut JM (2009) Drought stress and tropical maize: QTL-by-environment interactions and stability of QTLs across environments for yield components and secondary traits. Theor Appl Genet 119: 913-930.
11. Rabiei B, Valizadeh M, Ghareyazie B, Moghaddam M, Ali AJ (2004) Identification of QTLs for rice grain size and shape of Iranian cultivars using SSR markers. Euphytica 137: 325-332.
12. Redona ED, Mackill DJ (1998) Quantitative trait locus analysis for rice panicle and grain characteristics. Theor Appl Genet 96: 957-963.
13. Ribaut JM, Ragot M (2007) Marker-assisted selection to improve drought adaptation in maize: the backcross approach, perspectives, limitations, and alternatives. J Exp Bot 58: 351-360.
14. Ribaut JM, Hoisington DA, Deutsch JA, Jiang C, González-de-Leon D (1996) Identification of quantitative trait loci under drought conditions in tropical maize. 1. Flowering parameters and the anthesis-silking interval. Theor Appl Genet 92: 905-914.
15. Ribaut JM, Jiang C, González-de-León D, Edmeades GO, Hoisington DA (1997) Identification of quantitative trait loci under drought conditions in tropical maize. 2. Yield components and marker-assisted selection strategies. Theor Appl Genet 94: 887-896.
16. Sari-Gorla M, Krajewski P, Di Fonzo N, Villa M, Frova C (1999) Genetic analysis of drought tolerance in maize by molecular markers. II. Plant height and flowering. Theor Appl Genet 99: 289-295.
17. Tan Y, Xing Y, Li J, Yu S, Xu C, Zhang Q (2000) Genetic bases of appearance quality of rice grains in Shanyou 63, an elite rice hybrid. Theor Appl Genet 101: 823-829.
18. Wan X, Wan J, Weng J, Jiang L, Bi J, Wang C, Zhai H (2005) Stability of QTLs for rice grain dimension and endosperm chalkiness characteristics across eight environments. Theor Appl Genet 110: 1334-1346.
19. Wang J (2009) Inclusive composite interval mapping of quantitative trait genes. Acta Agron Sin 35: 239-245.
20. Zhang L, Li H, Li Z, Wang J (2008) Interactions between markers can be caused by the dominance effect of quantitative trait loci. Genetics 180: 1177-1190.