메뉴 건너뛰기




Volumn 63, Issue 2, 2012, Pages 218-224

Literature-based discovery: Beyond the ABCs

Author keywords

[No Author keywords available]

Indexed keywords

ABC MODEL; INTERESTINGNESS MEASURES; PAST AND PRESENT; SCIENTIFIC INVESTIGATION; TEXT MINING;

EID: 84857374254     PISSN: 15322882     EISSN: 15322890     Source Type: Journal    
DOI: 10.1002/asi.21599     Document Type: Article
Times cited : (61)

References (53)
  • 1
    • 33750576990 scopus 로고    scopus 로고
    • The role of serendipity in drug discovery
    • Ban, T.A. (2006). The role of serendipity in drug discovery. Dialogues in Clinical Neuroscience, 8, 335-344.
    • (2006) Dialogues in Clinical Neuroscience , vol.8 , pp. 335-344
    • Ban, T.A.1
  • 2
    • 33646567815 scopus 로고    scopus 로고
    • Conceptual biology, hypothesis discovery, and text mining: Swanson's legacy
    • Bekhuis, T. (2006). Conceptual biology, hypothesis discovery, and text mining: Swanson's legacy. Biomedical Digital Libraries, 3, 2.
    • (2006) Biomedical Digital Libraries , vol.3 , pp. 2
    • Bekhuis, T.1
  • 3
    • 84857363384 scopus 로고    scopus 로고
    • The Arrowsmith Project homepage
    • Best of the Web.
    • Best of the Web. (2007). The Arrowsmith Project homepage. Genetic Engineering & Biotechnology News, 27, 20.
    • (2007) Genetic Engineering & Biotechnology News , vol.27 , pp. 20
  • 6
    • 49649105335 scopus 로고    scopus 로고
    • Large-scale directional relationship extraction and resolution
    • Giles, C.B., & Wren, J.D. (2008). Large-scale directional relationship extraction and resolution. BMC Bioinformatics, 9(suppl 9), S11.
    • (2008) BMC Bioinformatics , vol.9 , Issue.SUPPL. 9
    • Giles, C.B.1    Wren, J.D.2
  • 9
    • 12744279636 scopus 로고    scopus 로고
    • Gene clustering by latent semantic indexing of MEDLINE abstracts
    • Homayouni, R., Heinrich, K.,Wei, L., & Berry, M.W. (2005). Gene clustering by latent semantic indexing of MEDLINE abstracts. Bioinformatics, 21(1), 104-115.
    • (2005) Bioinformatics , vol.21 , Issue.1 , pp. 104-115
    • Homayouni, R.1    Heinrich, K.2    Wei, L.3    Berry, M.W.4
  • 10
    • 84857362335 scopus 로고    scopus 로고
    • Literature-based knowledge discovery using natural language processing
    • P. Bruza&M.Weeber (Eds.). Berlin: Springer- Verlag
    • Hristovski, D., Friedman, C., Rindflesch, T.C., & Peterlin, B. (2008). Literature-based knowledge discovery using natural language processing. In P. Bruza&M.Weeber (Eds.), Literature-based discovery (pp. 133-152). Berlin: Springer-Verlag.
    • (2008) Literature-based Discovery , pp. 133-152
    • Hristovski, D.1    Friedman, C.2    Rindflesch, T.C.3    Peterlin, B.4
  • 11
    • 0142052944 scopus 로고    scopus 로고
    • A Bayesian networks approach for predicting proteinprotein interactions from genomic data
    • Jansen, R., Yu, H., Greenbaum, D., Kluger, Y., Krogan, N.J., Chung,. . .Gerstein M. (2003).ABayesian networks approach for predicting proteinprotein interactions from genomic data. Science, 302(5644), 449-453.
    • (2003) Science , vol.302 , Issue.5644 , pp. 449-453
    • Jansen, R.1    Yu, H.2    Greenbaum, D.3    Kluger, Y.4    Krogan, N.J.5    Chung6    Gerstein, M.7
  • 12
    • 79953645463 scopus 로고    scopus 로고
    • Identifying causal genes and dysregulated pathways in complex diseases
    • Kim,Y.-A.,Wuchty, S., & Przytycka, T.M. (2011). Identifying causal genes and dysregulated pathways in complex diseases. PLoS Computational Biology, 7(3), e1001095.
    • (2011) PLoS Computational Biology , vol.7 , Issue.3
    • Kim, Y.-A.1    Wuchty, S.2    Przytycka, T.M.3
  • 13
    • 77649218943 scopus 로고    scopus 로고
    • Is evolution Darwinian or/and Lamarckian?
    • Koonin, E.V., &Wolf,Y.I. (2009). Is evolution Darwinian or/and Lamarckian? Biology Direct 4, 42.
    • (2009) Biology Direct , vol.4 , pp. 42
    • Koonin, E.V.1    Wolf, Y.I.2
  • 14
    • 34547508214 scopus 로고    scopus 로고
    • Validating discovery in literature-based discovery
    • Kostoff, R.N. (2007). Validating discovery in literature-based discovery. Journal of Biomedical Informatics, 40(4), 448-450.
    • (2007) Journal of Biomedical Informatics , vol.40 , Issue.4 , pp. 448-450
    • Kostoff, R.N.1
  • 16
    • 0026335496 scopus 로고
    • The inheritance of acquired characteristics
    • Landman, O.E. (1991). The inheritance of acquired characteristics. Annual Review of Genetics 25, 1-20.
    • (1991) Annual Review of Genetics , vol.25 , pp. 1-20
    • Landman, O.E.1
  • 19
    • 35548931470 scopus 로고    scopus 로고
    • Like father like son. A fresh review of the inheritance of acquired characteristics
    • Liu, Y. (2007). Like father like son. A fresh review of the inheritance of acquired characteristics. EMBO Reports 8(9), 798-803.
    • (2007) EMBO Reports , vol.8 , Issue.9 , pp. 798-803
    • Liu, Y.1
  • 20
    • 77955971367 scopus 로고    scopus 로고
    • Benefits of neuropsychiatric phenomics: Example of the 5-lipoxygenase-leptin-Alzheimer connection
    • 2010
    • Manev, H., & Manev, R. (2010). Benefits of neuropsychiatric phenomics: Example of the 5-lipoxygenase-leptin-Alzheimer connection. Cardiovascular Psychiatry and Neurology, 2010, 838164.
    • (2010) Cardiovascular Psychiatry and Neurology , pp. 838164
    • Manev, H.1    Manev, R.2
  • 23
    • 79955072070 scopus 로고    scopus 로고
    • Domain-driven KDD for mining functionally novel rules and linking disjoint medical hypotheses
    • Sebastian, Y., & Then, P.H.H. (2011). Domain-driven KDD for mining functionally novel rules and linking disjoint medical hypotheses. Knowledge-based Systems, 24, 609-620.
    • (2011) Knowledge-based Systems , vol.24 , pp. 609-620
    • Sebastian, Y.1    Then, P.H.H.2
  • 24
    • 84857363383 scopus 로고    scopus 로고
    • Analyzing LBD methods using a general framework
    • P. Bruza & M. Weeber (Eds.). Berlin: Springer- Verlag
    • Sehgal, A.K., Qiu, X.Y., & Srinivasan, P. (2008). Analyzing LBD methods using a general framework. In P. Bruza & M. Weeber (Eds.), Literaturebased discovery (pp. 75-100). Berlin: Springer-Verlag.
    • (2008) Literaturebased Discovery , pp. 75-100
    • Sehgal, A.K.1    Qiu, X.Y.2    Srinivasan, P.3
  • 25
    • 0023181523 scopus 로고
    • Computer programs to support clinical decision making
    • Shortliffe, E.H. (1987). Computer programs to support clinical decision making. Journal of the American Medical Association, 258(17), 61-66.
    • (1987) Journal of the American Medical Association , vol.258 , Issue.17 , pp. 61-66
    • Shortliffe, E.H.1
  • 27
    • 0035480102 scopus 로고    scopus 로고
    • Predicting emerging technologies with the aid of text-based data mining: A micro approach
    • Smalheiser, N.R. (2001). Predicting emerging technologies with the aid of text-based data mining: A micro approach. Technovation, 21(10), 689-693.
    • (2001) Technovation , vol.21 , Issue.10 , pp. 689-693
    • Smalheiser, N.R.1
  • 28
    • 78650500890 scopus 로고    scopus 로고
    • Endogenous siRNAs and noncodingRNA-derived smallRNAs are expressed in adult mouse hippocampus and are up-regulated in olfactory discrimination training
    • Smalheiser, N.R., Lugli, G., Thimmapuram, J., Cook, E.H., & Larson, J. (2011). Endogenous siRNAs and noncodingRNA-derived smallRNAs are expressed in adult mouse hippocampus and are up-regulated in olfactory discrimination training. RNA, 17(1), 166-181.
    • (2011) RNA , vol.17 , Issue.1 , pp. 166-181
    • Smalheiser, N.R.1    Lugli, G.2    Thimmapuram, J.3    Cook, E.H.4    Larson, J.5
  • 29
    • 0035313946 scopus 로고    scopus 로고
    • RNAi and brain function: WasMcConnell on the right track?
    • Smalheiser, N.R., Manev, H., & Costa, E. (2001). RNAi and brain function: WasMcConnell on the right track? Trends in Neurosciences, 24(24), 216-218.
    • (2001) Trends in Neurosciences , vol.24 , Issue.24 , pp. 216-218
    • Smalheiser, N.R.1    Manev, H.2    Costa, E.3
  • 30
    • 0028109119 scopus 로고
    • Assessing a gap in the biomedical literature: Magnesium deficiency and neurologic disease
    • Smalheiser, N.R., & Swanson, D.R. (1994). Assessing a gap in the biomedical literature: Magnesium deficiency and neurologic disease. Neuroscience Research Communications, 15, 1-9.
    • (1994) Neuroscience Research Communications , vol.15 , pp. 1-9
    • Smalheiser, N.R.1    Swanson, D.R.2
  • 31
    • 13244298224 scopus 로고    scopus 로고
    • A population-based statistical approach identifies parameters characteristic of human microRNAmRNA interactions
    • Smalheiser, N.R., & Torvik, V.I. (2004). A population-based statistical approach identifies parameters characteristic of human microRNAmRNA interactions. BMC Bioinformatics, 5, 139.
    • (2004) BMC Bioinformatics , vol.5 , pp. 139
    • Smalheiser, N.R.1    Torvik, V.I.2
  • 32
    • 19444367079 scopus 로고    scopus 로고
    • Mammalian microRNAs derived from genomic repeats
    • Smalheiser, N.R., & Torvik, V.I. (2005). Mammalian microRNAs derived from genomic repeats. Trends in Genetics, 21(6), 322-326.
    • (2005) Trends in Genetics , vol.21 , Issue.6 , pp. 322-326
    • Smalheiser, N.R.1    Torvik, V.I.2
  • 33
    • 79960310877 scopus 로고    scopus 로고
    • The place of literature-based discovery in contemporary scientific practice
    • P. Bruza & M.Weeber (Eds.). Berlin: Springer- Verlag
    • Smalheiser, N.R.,&Torvik,V.I. (2008). The place of literature-based discovery in contemporary scientific practice. In P. Bruza & M.Weeber (Eds.), Literature-based discovery (pp. 13-22). Berlin: Springer-Verlag.
    • (2008) Literature-based Discovery , pp. 13-22
    • Smalheiser, N.R.1    Torvik, V.I.2
  • 36
    • 0000786889 scopus 로고
    • Undiscovered public knowledge
    • Swanson, D.R. (1986a). Undiscovered public knowledge. Library Quarterly, 56(2), 103-118.
    • (1986) Library Quarterly , vol.56 , Issue.2 , pp. 103-118
    • Swanson, D.R.1
  • 37
    • 0022786956 scopus 로고
    • Fish oil, Raynaud's Syndrome, and undiscovered public knowledge
    • Swanson, D.R. (1986b). Fish oil, Raynaud's Syndrome, and undiscovered public knowledge. Perspectives in Biology and Medicine, 30(1), 7-18.
    • (1986) Perspectives in Biology and Medicine , vol.30 , Issue.1 , pp. 7-18
    • Swanson, D.R.1
  • 38
    • 0024031265 scopus 로고
    • Migraine and magnesium: Eleven neglected connections
    • Swanson, D.R. (1988). Migraine and magnesium: Eleven neglected connections. Perspectives in Biology and Medicine, 31(4), 526-557.
    • (1988) Perspectives in Biology and Medicine , vol.31 , Issue.4 , pp. 526-557
    • Swanson, D.R.1
  • 39
    • 21144462294 scopus 로고
    • Intervening in the life cycles of scientific knowledge
    • Swanson, D.R. (1993). Intervening in the life cycles of scientific knowledge. Library Trends, 41(4), 606-631.
    • (1993) Library Trends , vol.41 , Issue.4 , pp. 606-631
    • Swanson, D.R.1
  • 41
    • 0031125707 scopus 로고    scopus 로고
    • An interactive system for finding complementary literatures: A stimulus to scientific discovery
    • Swanson, D.R.,&Smalheiser, N.R. (1997).An interactive system for finding complementary literatures: A stimulus to scientific discovery. Artificial Intelligence, 91(2), 183-203.
    • (1997) Artificial Intelligence , vol.91 , Issue.2 , pp. 183-203
    • Swanson, D.R.1    Smalheiser, N.R.2
  • 43
    • 77957703420 scopus 로고    scopus 로고
    • Discovering gene functional relationships using FAUN (Feature Annotation Using Nonnegative matrix factorization)
    • Tjioe, E., Berry, M.W., & Homayouni, R. (2010). Discovering gene functional relationships using FAUN (Feature Annotation Using Nonnegative matrix factorization). BMC Bioinformatics, 11(suppl 6), S14.
    • (2010) BMC Bioinformatics , vol.11 , Issue.SUPPL. 6
    • Tjioe, E.1    Berry, M.W.2    Homayouni, R.3
  • 44
    • 34547852211 scopus 로고    scopus 로고
    • Aquantitative model for linking two disparate sets of articles in Medline
    • Torvik,V.I.,&Smalheiser, N.R. (2007).Aquantitative model for linking two disparate sets of articles in Medline. Bioinformatics, 23(13), 1658-1665.
    • (2007) Bioinformatics , vol.23 , Issue.13 , pp. 1658-1665
    • Torvik, V.I.1    Smalheiser, N.R.2
  • 46
    • 27744586758 scopus 로고    scopus 로고
    • Online tools to support literaturebased discovery in the life sciences
    • Weeber, M.,Kors, J.A.,&Mons, B. (2003). Online tools to support literaturebased discovery in the life sciences. Briefings in Bioinformatics, 6(3), 277-286.
    • (2003) Briefings in Bioinformatics , vol.6 , Issue.3 , pp. 277-286
    • Weeber, M.1    Kors, J.A.2    Mons, B.3
  • 47
    • 0037545622 scopus 로고    scopus 로고
    • Generating hypotheses by discovering implicit associations in the literature: A case report of a search for new potential therapeutic uses for thalidomide
    • Weeber, M.,Vos, R., Klein, H., De Jong-Van Den Berg, L.T., Aronson, A.R., & Molema, G. (2003). Generating hypotheses by discovering implicit associations in the literature: A case report of a search for new potential therapeutic uses for thalidomide. Journal of the American Medical Informatics Association, 10, 252-259.
    • (2003) Journal of the American Medical Informatics Association , vol.10 , pp. 252-259
    • Weeber, M.1    Vos, R.2    Klein, H.3    De Jong-Van Den Berg, L.T.4    Aronson, A.R.5    Molema, G.6
  • 48
    • 78650935860 scopus 로고    scopus 로고
    • Predictive rule discovery from electronic health records. Proceedings of the First
    • November 11-12, 2010, Arlington, Virginia
    • Weiss, S.M., Indurkhya, N., & Apte, C.V. (2010). Predictive rule discovery from electronic health records. Proceedings of the First ACM International Health Informatics Symposium IHI'10, November 11-12, 2010, Arlington, Virginia, pp. 734-743.
    • (2010) ACM International Health Informatics Symposium IHI'10 , pp. 734-743
    • Weiss, S.M.1    Indurkhya, N.2    Apte, C.V.3
  • 49
    • 13244268327 scopus 로고    scopus 로고
    • Extending the mutual information measure to rank inferred literature relationships
    • Wren, J.D. (2004). Extending the mutual information measure to rank inferred literature relationships. BMC Bioinformatics, 5, 145.
    • (2004) BMC Bioinformatics , vol.5 , pp. 145
    • Wren, J.D.1
  • 50
    • 77955324139 scopus 로고    scopus 로고
    • The 'open discovery' challenge
    • P. Bruza&M.Weeber (Eds.). Berlin: Springer- Verlag
    • Wren, J.D. (2008). The 'open discovery' challenge. In P. Bruza&M.Weeber (Eds.), Literature-based discovery (pp. 39-55). Berlin: Springer-Verlag.
    • (2008) Literature-based Discovery , pp. 39-55
    • Wren, J.D.1
  • 51
    • 1342330525 scopus 로고    scopus 로고
    • Knowledge discovery by automated identification and ranking of implicit relationships
    • Wren, J.D., Bekeredjian, R., Stewart, J.A., Shohet, R.V., & Garner, H.R. (2004). Knowledge discovery by automated identification and ranking of implicit relationships. Bioinformatics, 20(3), 389-398.
    • (2004) Bioinformatics , vol.20 , Issue.3 , pp. 389-398
    • Wren, J.D.1    Bekeredjian, R.2    Stewart, J.A.3    Shohet, R.V.4    Garner, H.R.5
  • 52
    • 78650988217 scopus 로고    scopus 로고
    • Evaluation of literature-based discovery systems
    • P. Bruza & M. Weeber (Eds.). Berlin: Springer- Verlag
    • Yetisgen-Yildiz, M., & Pratt, W. (2008). Evaluation of literature-based discovery systems. In P. Bruza & M. Weeber (Eds.), Literature-based discovery (pp. 101-113). Berlin: Springer-Verlag.
    • (2008) Literature-based Discovery , pp. 101-113
    • Yetisgen-Yildiz, M.1    Pratt, W.2
  • 53
    • 67649319239 scopus 로고    scopus 로고
    • A new evaluation methodology for literature-based discovery systems
    • Yetisgen-Yildiz, M., & Pratt,W. (2009). A new evaluation methodology for literature-based discovery systems. Journal of Biomedical Informatics, 42(4), 633-643.
    • (2009) Journal of Biomedical Informatics , vol.42 , Issue.4 , pp. 633-643
    • Yetisgen-Yildiz, M.1    Pratt, W.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.