A Model Sheet Mineral System to Study Fungal Bioweathering of Mica

Geomicrobiology Journal

Volumn 29, Issue 4, 2012, Pages 323-331

  Wei, Zhan ^a   Kierans, Martin ^a   Gadd, Geoffrey M ^a  

^a UNIVERSITY OF DUNDEE   (United Kingdom)

Author keywords

bioweathering; fungi; geomycology; mica; mineral degradation; muscovite; silicates

Indexed keywords

BACTERIUM; BIOFILM; COLONIZATION; DEGRADATION; DISSOLUTION; EXPERIMENTAL STUDY; FUNGUS; GEOMICROBIOLOGY; LABORATORY METHOD; MICA; MICROBIAL ACTIVITY; MUSCOVITE; PHYLLOSILICATE; WEATHERING;

ASPERGILLUS NIGER; BACTERIA (MICROORGANISMS); FUNGI;

EID: 84857348384     PISSN: 01490451     EISSN: 15210529     Source Type: Journal    
DOI: 10.1080/01490451.2011.558567     Document Type: Article

References (68)

1. Adamo P, Vingiani S, Violante P. 2002. Lichen-rock interactions and bioformation of minerals. Dev Soil Sci, 28B: 377-391.
2. Adeyemi AO, Gadd GM. 2005. Fungal degradation of calcium-, lead- and silicon-bearing minerals. BioMetals, 18: 269-281.
3. Ascaso C, Wierzchos J, Castello R. 1998. Study of the biogenic weathering of calcareous litharenite stones caused by lichen and endolithic microorganisms. Int Biodeter Biodegr, 42: 29-38.
4. Balogh-Brunstad Z, Keller CK, Dickinson JT, Stevens F, Li CY, Bormann BT. 2008. Biotite weathering and nutrient uptake by ectomycorrhizal fungus, Suillus tomentosus, in liquid-culture experiments. Geochim Cosmochim Acta, 72: 2601-2618.
5. Banfield JF, Barker WW, Welch SA, Taunton A. 1999. Biological impact on mineral dissolution: application of the lichen model to understanding mineral weathering in the rhizosphere. Proc Nat Acad Sci USA, 96: 3404-3411.
6. Barker WW, Banfield JF. 1996. Biologically versus inorganically mediated weathering reactions: relationships between minerals and extracellular microbial polymers in lithobiontic communities. Chem Geol, 132: 55-69.
7. Barker, WW, Welch, SA, Banfield JF. 1997. Geomicrobiologyof silicate mineral weathering. Rev Mineral, 35: 391-428.
8. Bennett PC, Rogers JR, Choi WJ. 2001. Silicates, silicate weathering and, microbial ecology. Geomicrobiol J, 18: 3-19.
9. Bergna HE. 1994. Colloid chemistry of silica-an overview. Coll Chem Silica, 234: 1-47.
10. 2, New York, NY: Oxford University Press.
11. Boyle JR, Voigt GK. 1973. Biological weathering of silicate minerals, implications for tree nutrition and soil genesis. Plant Soil, 38: 191-201.
12. Burford EP, Fomina M, Gadd GM. 2003a. Fungal involvement in bioweathering and biotransformation of rocks and minerals. Mineral Mag, 67: 1127-1155.
13. Burford EP, Kierans M, Gadd GM. 2003b. Geomycology: Fungi in mineral substrata. Mycologist, 17: 98-107.
14. Burgstaller W, Schinner F. 1993. Leaching of metals with fungi. J Biotechnol, 27: 91-116.
15. Chen J, Blume HP, Beyer L. 2000. Weathering of rocks induced by lichen colonization-a review. Catena, 39: 121-146.
16. Crawford RH, Floyed M, Li CY. 2000. Degradation of serpentine and muscovite rock minerals and immobilization of cations by soil. Penicillium spp. Phyton, 40: 315-322.
17. Cutler N, Viles H. 2010. Eukaryotic microorganisms and stone biodeterioration. Geomicrobiol J, 27: 630-646.
18. Deer WA, Howie RA, Wise WS, Zussman J. 2004. Rock-forming minerals. Volume 4B. In Framework Silicates: Silica Minerals. Feldspathoids and the Zeolites, (2nd ed.). London: Geological Society of London. 982 p.
19. Deer WA, Howie RA, Zussman J. 1992. An Introduction to the Rock Forming Minerals (2nd edition), London, UK: Longman.
20. Ehrlich HL, Newman DK. 2009. Geomicrobiology, 5th ed., Boca Raton, FL: CRC Press/Taylor and Francis.
21. Finlay R, Wallander H, Smits M, Holmstrom S, Van Hees P, Lian B, Rosling A. 2009. The role of fungi in biogenic weathering in boreal forest soils. Fungal Biol Rev, 23: 101-106.
22. Fomina M, Alexander IJ, Colpaert JV, Gadd GM. 2005. Solubilization of toxic metal minerals and metal tolerance of mycorrhizal fungi. Soil Biol Biochem, 37: 851-866.
23. Fomina M, Burford EP, Hillier S, Kierans M, Gadd GM. 2010. Rock-building fungi. Geomicrobiol J, 27: 624-629.
24. Gadd GM. 1993. Interactions of fungi with toxic metals. New Phytol, 124: 25-60.
25. Gadd GM. 1999. Fungal production of citric and oxalic acid: importance in metal speciation, physiology and biogeochemical processes. Adv Microb Physiol, 41: 47-92.
26. Gadd GM. 2007. Geomycology: biogeochemical transformations of rocks, minerals, metals and radionuclides by fungi, bioweathering and bioremediation. Mycol Res, 111: 3-49.
27. Gadd GM. 2009. Biosorption: critical review of scientific rationale, environmental importance and significance for pollution treatment. J Chem Technol Biotechnol, 84: 13-28.
28. Gadd GM 2010. Metals, minerals and microbes: geomicrobiology and bioremediation. Microbiol, 156: 609-643.
29. Gadd GM, Raven JA. 2010. Geomicrobiology of eukaryotic microorganisms. Geomicrobiol J, 27: 491-519.
30. Gazze AS, Saccone L, Ragnarsdottir VK, McMaster TJ. Mineral dissolution: from ions to eukaryotes. Abstracts of the 20th General Meeting of the International Mineralogical Association. August 21-27 2010. Acta Mineral Petrograph 6:387
31. 2O) and the formation of calcium oxalate by Aspergillus niger and Serpula himantioides. Mycol Res, 102: 825-830.
32. Gleeson DB, Clipson NJW, Melville K, Gadd GM, McDermott FP. 2005. Mineralogical control of fungal community structure in a weathered pegmatitic granite. Microb Ecol, 50: 360-368.
33. Gleeson DB, McDermott F, Clipson N. 2007. Understanding microbially active biogeochemical environments. Adv Appl Microbiol, 62: 81-104.
34. Gleeson DB, Melville K, McDermott FP, Clipson NJW, Gadd GM. 2010. Molecular characterization of fungal communities in sandstone. Geomicrobiol J, 27: 559-571.
35. Gorbushina AA. 2007. Life on the rocks. Environ Microbiol, 9: 1613-1631.
36. Gorbushina AA, Broughton WJ. 2009. Microbiology of the atmosphere-rock interface: how biological interactions and physical stresses modulate a sophisticated microbial ecosystem. Annu Rev Microbiol, 63: 431-450.
37. Gu JD, Ford TE, Berke NS, Mitchell R. 1998. Biodeterioration of concrete by the fungus Fusarium. Int Biodeter Biodegrad, 41: 101-109.
38. Henderson MEK, Duff RB. 1963. The release of metallic and silicate ions from minerals, rock, and soils by fungal activity. Eur J Soil Sci, 14: 236-246.
39. Hoffland ER, Giesler T, Jongmans N, van Breemen N. 2002. Increasing feldspar tunneling by fungi across a north Sweden podzol chronosequence. Ecosystems, 5: 11-22.
40. Hoffland ER, Kuyper TW, Wallander H, Plassard C, Gorbushina AA, Haselwandter KHS, Landeweert R, Lundstrom US, Rosling A, Sen Robin Smits MM, van Hees P, van Breemen N. 2004. The role of fungi in weathering. Frontiers Ecol Environ, 2: 258-264.
41. Hurlbut CS, Klein C. 1985. Manual of Mineralogy, (20th ed.), New York, NY: John Wiley.
42. Hutchens E. 2009. Microbial selectivity on mineral surfaces: possible implications for weathering processes. Fungal Biol Rev, 23: 115-121.
43. Jongmans AG, van Breemen N, Lungström U, van Hees PAW, Finlay RD, Srinivasan M, Unestam T, Giesler R, Melkerud PA, Olsson M. 1997. Rock-eating fungi. Nature, 389: 682-683.
44. Landeweert, R, Hoffland, E, Finlay, R D, Kuyper, T W, Van Breemen, N. 2001. Linking plants to rocks: ectomycorrhizal fungi mobilize nutrients from minerals. Trends Ecol Evol, 16: 248-254.
45. Leyval, C, Berthelin, J. 1991. Weathering of mica by roots and rhizospheric microorganisms of pine. Soil Sci Soc Am J, 55: 1009-1016.
46. Mattey M. 1992. The production of organic acids. Crit Rev Biotechnol, 12: 87-132.
47. Morley GF, Gadd GM. 1995. Sorption of toxic metals by fungi and clay minerals. Mycol Res, 99: 1429-1438.
48. 2+ deficiency on phyllosilicate evolution. Plant Soil, 177: 191-201.
49. +. Plant Soil, 179: 141-150.
50. Parkinson D, Gray TRG, Williams ST. 1971. Methods for studying the ecology of soil microorganisms. In International Biological Programme (IBP), London, UK: Blackwell. 116 p.
51. Rosling A, Lindahl BD, Taylor AFS, Finlay RD. 2004. Mycelial growth and substrate acidification of ectomycorrhizal fungi in response to different minerals. FEMS Microbiol Ecol, 47: 31-37.
52. Rosling A, Roose T, Herrmann AM, Davidson FA, Finlay RD, Gadd GM. 2009. Approaches to modelling mineral weathering by fungi. Fungal Biol Rev, 41: 1-7.
53. Rosling A, Suttle KB, Johansson E, van Hees PAW, Banfield JF. 2007. Phosphorus availability influences the dissolution of apatite by soil fungi. Geobiol, 5: 265-280.
54. Santelli CM, Welch SA, Westrich HR, Banfield JF. 2001. The effect of Fe-oxidizing bacteria on Fe-silicate mineral dissolution. Chem Geol, 180: 99-115.
55. Sayer JA, Gadd GM. 1997. Solubilization and transformation of insoluble inorganic metal compounds to insoluble metal oxalates by Aspergillus niger. Mycol Res, 101: 653-661.
56. Sayer JA, Gadd GM. 2001. Binding of cobalt and zinc by organic acids and culture filtrates of Aspergillus niger grown in the absence or presence of insoluble cobalt or zinc phosphate. Mycol Res, 105: 1261-1267.
57. Scholl LV, Smits MM, Hoffland E. 2006. Ectomycorrhizal weathering of the soil minerals muscovite and hornblende. New Phytol, 171: 805-814.
58. Smits MM. 2009. Scale matters? Exploring the effect of scale on fungal-mineral interactions. Fungal Biol Rev, 23: 132-137.
59. Sterflinger K. 2000. Fungi as geologic agents. Geomicrobiol J, 17: 97-124.
60. Sverdrup H. 2009. Chemical weathering of soil minerals and the role of biological processes. Fungal Biol Rev, 23: 94-100.
61. Thorseth IH, Furnes H, Tumyr O. 1995. Textural and chemical effects of bacterial activity on basaltic glass: an experimental approach. Chem Geol, 119: 139-160.
62. Ullman WJ, Kirchman DL, Welch SA, Vandevivere P. 1996. Laboratory evidence for microbiologically mediated silicate mineral dissolution in nature. Chem Geol, 132: 11-17.
63. Uroz, S, Calvaruso, C, Turpault, M P, Frey-Klett P. 2009. Mineral weathering by bacteria: ecology, actors and mechanisms. Trends Microbiol, 17: 378-387.
64. van Breemen N, Finlay R, Lundstrom U, Jongmans AG, Giesler R, Olsson M. 2000a. Mycorrhizal weathering: a true case of mineral plant nutrition?. Biogeochem, 49: 53-67.
65. van Breemen N, Lundstroem US, Jongmans AG. 2000b. Do plants drive podzolization via rock-eating mycorrhizal fungi?. Geoderma, 94: 163-171.
66. Wallander H, Wickman T. 1999. Biotite and microcline as potassium sources in ectomycorrhizal and non-ectomycorrhizal Pinus sylvestris seedlings. Mycorrhiza, 9: 25-32.
67. White AF, Blum AE. 1995. Effects of climate on chemical weathering in watersheds. Geochim Cosmochim Acta, 59: 1729-1747.
68. Yuan L, Huang J, Li X, Christie P. 2004. Biological mobilization of potassium from clay minerals by ectomycorrhizal fungi and eucalypt seedling roots. Plant Soil, 262: 351-361.