Detection of multiple Verticillium species in soil using density flotation and real-time polymerase chain reaction

Plant Disease

Volumn 95, Issue 12, 2011, Pages 1571-1580

  Debode, J ^a   van Poucke, K ^a   Franca S C ^b   Maes, M ^a   Hofte M ^b   Heungens, K ^a  

^a INSTITUTE FOR AGRICULTURAL AND FISHERIES RESEARCH ILVO   (Belgium)

^b GHENT UNIVERSITY   (Belgium)

Author keywords

[No Author keywords available]

Indexed keywords

VERTICILLIUM DAHLIAE; VERTICILLIUM TRICORPUS;

EID: 84857176153     PISSN: 01912917     EISSN: None     Source Type: Journal    
DOI: 10.1094/PDIS-04-11-0267     Document Type: Article

References (39)

1. Atallah, Z. K., Bae, J., Jansky, S. H., Rouse, D. I., and Stevenson, W. R. 2007. Multiplex real-time quantitative PCR to detect and quantify Verticillium dahliae colonization in potato lines that differ in response to Verticillium wilt. Phytopathology 97:865-872.
2. Barbara, D. J., and Clewes, E. 2003. Plant pathogenic Verticillium species: How many of them are there? Mol. Plant Pathol. 4:297-305.
3. Berbegal, M., Ortega, A., García-Jiménez, J., and Armengol, J. 2007. Inoculum density-disease development relationship in Verticillium Wilt of artichoke caused by Verticillium dahliae. Plant Dis. 91:1131-1136.
4. Butterfield, E. J., and Devay, J. E. 1977. Reassessment of soil assays for Verticillium dahliae. Phytopathology 67:1073-1078.
5. Clewes, E., Edwards, S. G., and Barbara, D. J. 2008. Direct molecular evidence supports long-spored microsclerotial isolates of Verticillium from crucifers being interspecific hybrids. Plant Pathol. 57:1047-1057.
6. Collado-Romero, M., Jimenez-Diaz, R. M., and Mercado-Blanco, J. 2010. DNA sequence analysis of conserved genes reveals hybridization events that increase genetic diversity in Verticillium dahliae. Fungal Biol. 114:209-218.
7. Collins, A., Okoli, C. A. N., Morton, A., Parry, D., Edwards, S. G., and Barbara, D. J. 2003. Isolates of Verticillium dahliae pathogenic to crucifers are of at least three distinct molecular types. Phytopathology 93:364-376.
8. Davis, J. R., Everson, D. O., Sorensen, L. H., and Schneider, A. T. 2000. Associations of Verticillium tricorpus with soil suppressiveness of Verticillium wilt of potato. Pages 347-351 in: Advances in Verticillium: Research and Disease Management. E. C. Tjamos, R.C. Rowe, J. B. Heale, and D. R. Fravel, eds. American Phytopathological Society, St Paul, MN.
9. Debode, J. 2005. Integrated control of Verticillium wilt of cauliflower. Ph.D. thesis. Ghent University, Ghent, Belgium.
10. Debode, J., Clewes, E., De Backer, G., and Hofte, M. 2005. Lignin is involved in the reduction of Verticillium dahliae var. longisporum inoculum in soil by crop residue incorporation. Soil. Biol. Biochem. 37:301-309.
11. Debode, J., Van Hemelrijck, W., Baeyen, S., Creemers, P., Heungens, K., and Maes, M. 2009. Quantitative detection and monitoring of Colleto-trichum acutatum in strawberry leaves using real-time PCR. Plant Pathol. 58:504-514.
12. Eynck, C., Koopmann, B., Grunewaldt-Stoecker, G., Karlovsky, P., and von Tiedemann, A. 2007. Differential interactions of Verticillium longisporum and V. dahliae with Brassica napus detected with molecular and histological techniques. Eur. J. Plant Pathol. 118:259-274.
13. Ginzinger, D. G. 2002. Gene amplification using real-time quantitative PCR: An emerging technology hits the mainstream. Exp. Hematol. 30:503-512.
14. Goud, J. C., and Termorshuizen, A. J. 2003. Quality of methods to quantify microsclerotia of Verticillium dahliae in soil. Eur. J. Plant Pathol. 109:523-534.
15. Goud, J. K. C., Termorshuizen, A. J., and Gams, W. 2003. Morphology of Verticillium dahliae and V. tricorpus on semi-selective media used for the detection of V. dahliae in soil. Mycol Res. 107:822-830.
16. Harris, D. C., and Yang, J. R. 1996. The relationship between the amount of Verticillium dahliae in soil and the incidence of strawberry wilt as a basis for disease risk prediction. Plant Pathol. 45:106-114.
17. Harris, D. C., Yang, J. R., and Ridout, M. S. 1993. The detection and estimation of Verticillium dahliae in naturally infested soil. Plant Pathol. 42:238-2350.
18. Huisman, O. C., and Ashworth, L. J. 1974. Verticillium albo-atrum: Quantitative isolation of microsclerotia from field soils. Phytopathology 64:1159-1163.
19. Inderbitzin, P., Davis, R. M., Bostock, R. M., and Subbarao, K. V. 2011. The ascomycete Verticillium longisporum is a hybrid and a plant pathogen with an expanded host range. PLoS ONE 6:e18260.
20. Ispahani, S. K., Goud, J. C., Termorshuizen, A. J., Morton, A., and Barbara, D. J. 2008. Host specificity, but not high-temperature tolerance, is associated with recent outbreaks of Verticillium dahliae in chrysanthemum in the Netherlands. Eur. J. Plant Pathol. 122:437-442.
21. Karapapa, V. K., Bainbridge, B. W., and Heale, J. B. 1997. Morphological and molecular characterization of Verticillium longisporum comb. nov., pathogenic to oilseed rape. Mycol. Res. 101:1281-1294.
22. Klosterman, S. J., Atallah, Z. K., Vallad, G. E., and Subbarao, K. V. 2009. Diversity, pathogenicity, and management of Verticillium species. Annu. Rev. Phytopathol. 47:39-62.
23. Lievens, B., Brouwer, M., Vanachter, A. C. R. C., Levesque, C. A., Cammue, B. P. A., and Thomma, B. P. H. J. 2005. Quantitative assessment of phytopathogenic fungi in various substrates using a DNA macroarray. Environ. Microbiol. 7:1698-1710.
24. Mahuku, G. S., and Platt, H. W. 2002. Quantifying Verticillium dahliae in soils collected from potato fields using a competitive PCR assay. Am. J. Potato Res. 79:107-117.
25. Mauchline, T. H., Kerry, B. R., and Hirsch, P. R. 2002. Quantification in soil and the rhizosphere of the nematophagous fungus Verticillium chlamydosporium by competitive PCR and comparison with selective plating. Appl. Environ. Microbiol. 68:1846-1853.
26. Menzies, J. D., and Griebel, G. E. 1967. Survival and saprophytic growth of Verticillium dahliae in uncropped soil. Phytopathology 57:703-709.
27. Mol, L., Scholte, K., and Vos, J. 1995. Effects of crop rotation and removal of crop debris on the soil population of two isolates of Verticillium dahliae. Plant Pathol. 44:1070-1074.
28. Moukhamedov, R., Hu, X., Nazar, R. N., and Robb, J. 1994. Use of polymerase chain reaction-amplified ribosomal intergenic sequences for the diagnosis of Verticillium tricorpus. Phytopathology 84:256-259.
29. O'Donnell, K., and Cigelnik, E. 1997. Two divergent intragenomic rDNA ITS2 types within a monophyletic lineage of the fungus Fusarium are nonorthologous. Mol. Phylogenet. Evol. 7:103-116.
30. Qin, Q. M., Vallad, G. E., and Subbarao, K. V. 2008. Characterization of Verticillium dahliae and V. tricorpus isolates from lettuce and artichoke. Plant Dis. 92:69-77.
31. Qin, Q. M., Vallad, G. E., Wu, B. M., and Subbarao, K. V. 2006. Phylogenetic analyses of phytopathogenic isolates of Verticillium spp. Phytopathology 96:582-592.
32. Robinson, N., Platt, H. W., and Hale, L. R. 2007. Verticillium dahliae interactions with V. albo-atrum 'Group 2' and V. tricorpus and their effects on Verticillium wilt disease development in potato. Am. J. Potato Res. 84:229-235.
33. Schnathorst, W. C. 1965. Origin of new growth in dormant microsclerotial masses of Verticillium albo-atrum. Mycologia 57:343-351.
34. Schnathorst, W. C. 1981. Life cycle and epidemiology of Verticillium. Pages 81-111 in: Fungal Wilt Diseases of Plants. M. E. Mace, A. A. Bell, and C. H. Beckman, eds. Academic Press, New York.
35. Steventon, L. A., Fahleson, J., Hu, Q., and Dixelius, C. 2002. Identification of the causal agent of Verticillium wilt of winter oilseed rape in Sweden, V. longisporum. Mycol. Res. 106:570-578.
36. Termorshuizen, A. J., Davis, J. R., Gort, G., Harris, D. C., Huisman, O. C., Lazarovits, G., Locke, T., Vara, J. M. M., Mol, L., Paplomatas, E. J., Platt, H. W., Powelson, M., Rouse, D. I., Rowe, R. C., and Tsror, L. 1998. Interlaboratory comparison of methods to quantify microsclerotia of Verticillium dahliae in soil. Appl. Environ. Microbiol. 64:3846-3853.
37. van Hemelrijck, W., Debode, J., Heungens, K., Maes, M., and Creemers, P. 2010. Phenotypic and genetic characterization of Colletotrichum isolates from Belgian strawberry fields. Plant Pathol. 59:853-861.
38. White, T. J., Bruns, T., Lee, S., and Taylor, J. W. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. Pages 315-322 in: PCR Protocols: A Guide to Methods and Applications. M. A.G. D. S. J. W. Innis, ed. Academic Press, New York.
39. Xiao, C. L., and Subbarao, K. V. 1998. Relationships between Verticillium dahliae inoculum density and wilt incidence, severity, and growth of cauliflower. Phytopathology 88:1108-1115.