DNA sequence analysis of conserved genes reveals hybridization events that increase genetic diversity in Verticillium dahliae

Fungal Biology

Volumn 114, Issue 2-3, 2010, Pages 209-218

  Collado Romero, Melania ^a   Jiménez Díaz, Rafael M ^a,b   Mercado Blanco, Jesús ^a  

^a INSTITUTO DE AGRICULTURA SOSTENIBLE   (Spain)

^b Escuela Tecnica Superior de Ingenieros Agronomos y de Montes Universidad de Co   (Spain)

Author keywords

Fungal evolution; Fungal hybrid; Gene genealogies; Gibellulopsis nigrescens; Parasexuality; V. longisporum; VCGs; Verticillium spp.

Indexed keywords

FUNGAL DNA; FUNGAL PROTEIN; RIBOSOMAL SPACER DNA;

FUNGUS; GENEALOGY; GENETIC ANALYSIS; GENETIC MARKER; GENETIC VARIATION; HYBRIDIZATION; PHYLOGENETICS; SEXUAL BEHAVIOR; SEXUALITY;

AMPLIFIED FRAGMENT LENGTH POLYMORPHISM; ARTICLE; CLASSIFICATION; DNA SEQUENCE; FUNGAL GENE; GENETIC VARIABILITY; GENETICS; HYBRIDIZATION; METHODOLOGY; MOLECULAR EVOLUTION; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY; POLYMERASE CHAIN REACTION; RNA GENE; VERTICILLIUM;

AMPLIFIED FRAGMENT LENGTH POLYMORPHISM ANALYSIS; CONSERVED SEQUENCE; DNA, FUNGAL; DNA, RIBOSOMAL SPACER; EVOLUTION, MOLECULAR; FUNGAL PROTEINS; GENES, FUNGAL; GENES, RRNA; GENETIC VARIATION; HYBRIDIZATION, GENETIC; MOLECULAR SEQUENCE DATA; PHYLOGENY; POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS, DNA; VERTICILLIUM;

VERTICILLIUM ALBO-ATRUM; VERTICILLIUM DAHLIAE; VERTICILLIUM DAHLIAE VAR. LONGISPORUM;

EID: 77949334303     PISSN: 18786146     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.funbio.2009.12.005     Document Type: Article

References (52)

1. Altschul S.F., Madden T.L., Schaffer A.A., Zhang J., Zhang Z., Miller W., and Lipman D.J. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Research 25 (1997) 389-402
2. Barbara D.J., and Clewes E. Plant pathogenic Verticillium species: how many of them are there?. Molecular Plant Pathology 4 (2003) 297-305
3. Bell A.A. Mechanisms of disease resistance in Gossypium species and variation in Verticillium dahliae. In: Constable G.A., and Forrester W. (Eds). Proceedings of the World Cotton Research, Conference 1 (1994), CSIRO, Melbourne 225-235
4. Bhat R.G., Smith R.F., Koike S.T., Wu B.M., and Subbarao K.V. Characterization of Verticillium dahliae isolates and wilt epidemics of pepper. Plant Disease 87 (2003) 789-797
5. Carder J.H., Morton A., Tabrett A.M., and Barbara D.J. Detection and differentiation by PCR of subspecific groups within two Verticillium species causing vascular wilts in herbaceous hosts. In: Schots A., Dewey F.M., and Oliver R. (Eds). Modern Assays for Plant Pathogenic Fungi (1994), CAB International, Oxford, UK 91-97
6. Chen W. Vegetative compatibility groups of Verticillium dahliae from ornamental woody plants. Phytopathology 84 (1994) 214-219
7. Clewes E., Edwards S.G., and Barbara D.J. Direct molecular evidence supports long-spored microsclerotial isolates of Verticillium from crucifers being interspecific hybrids. Plant Pathology 57 (2008) 1047-1057
8. Clewes E., and Barbara D.J. Two allopolyploid ascomycete fungal plant pathogens were not rescued by vertical transmission. New Phytologist 177 (2007) 583-585
9. Collado-Romero M., Berbegal M., Jiménez-Díaz R.M., Armengol J., and Mercado-Blanco J. A PCR-based 'molecular tool box' for in planta differential detection of Verticillium dahliae vegetative compatibility groups infecting artichoke. Plant Pathology 58 (2009) 515-526
10. Collado-Romero M., Mercado-Blanco J., Olivares C., and Jiménez-Díaz R.M. Phylogenetic analysis of vegetative compatibility groups of Verticillium dahliae. Phytopathology 98 (2008) 1019-1028
11. Collado-Romero M., Mercado-Blanco J., Olivares-García C., Valverde-Corredor A., and Jiménez-Díaz R.M. Molecular variability within and among Verticillium dahliae vegetative compatibility groups determined by AFLP and PCR markers. Phytopathology 96 (2006) 485-495
12. Collins A., Mercado-Blanco J., Jiménez-Díaz R.M., Olivares C., Clewes E., and Barbara D.J. Correlation of molecular markers and biological properties in Verticillium dahliae and the possible origins of some isolates. Plant Pathology 54 (2005) 549-557
13. Collins A., Okoli C.A.N., Morton A., Parry D., Edwards S.G., and Barbara D.J. Isolates of Verticillium dahliae pathogenic to crucifers are of at least three distinct molecular types. Phytopathology 93 (2003) 364-376
14. Elena K., and Paplomatas E.J. Vegetative compatibility groups within Verticillium dahliae isolates from different hosts in Greece. Plant Pathology 47 (1998) 635-640
15. Fahleson J., Hu Q., and Dixelius C. Phylogenetic analysis of Verticillium species based on nuclear and mitochondrial sequences. Archives of Microbiology 181 (2004) 435-442
16. Fahleson J., Lagercrantz U., Hu Q., Stevenson L.A., and Dixelius C. Estimation of genetic variation among Verticillium isolates using AFLP analysis. European Journal of Plant Pathology 109 (2003) 361-371
17. Hastie A.C. The parasexual cycle in Verticillium albo-atrum. Genetic Research 5 (1964) 305-315
18. Hastie A.C. The genetics of conidial fungi. In: Cole G.T., and Kendrick B. (Eds). Biology of Conidial Fungi vol. 2 (1981), Academic Press, San Diego 511-547
19. Heale J.B. Verticillium spp.: the cause of vascular wilts in many species. Advances in plant pathology. In: Sidhu G.S. (Ed). Genetics of Plant Pathogenic Fungi vol. 6 (1988), Academic Press, London 291-312
20. Jackson C.W., and Heale J.B. Relationship between DNA content and spore volume in sixteen isolates of Verticillium lecanii and two new diploids of V. dahliae (=V. dahliae var. longisporum Stark). Journal of General Microbiology 131 (1985) 3229-3236
21. Jiménez-Díaz R.M., Mercado-Blanco J., Olivares-García C., Collado-Romero M., Bejarano-Alcázar J., Rodríguez-Jurado D., Giménez-Jaime A., García-Jiménez J., and Armengol J. Genetic and virulence diversity in Verticillium dahliae populations infecting artichoke in eastern-central Spain. Phytopathology 96 (2006) 288-298
22. Joaquim T.R., and Rowe R.C. Reassessment of vegetative compatibility relationships among strains of Verticillium dahliae using nitrate non-utilizing mutants. Phytopathology 80 (1990) 1160-1166
23. Joaquim T.R., and Rowe R.C. Vegetative compatibility and virulence strains of Verticillium dahliae from soil and potato plant. Phytopathology 81 (1991) 552-558
24. Jukes T.H., and Cantor C.R. Evolution of protein molecules. In: Munro H.H. (Ed). Mammalian Protein Metabolism (1969), Academic Press, New York 21-132
25. Karapapa V.K., and Typas M.A. Molecular characterization of the host-adapted pathogen Verticillium longisporum on the basis of a group-I intron found in the nuclear SSU-rRNA gene. Current Microbiology 42 (2001) 217-224
26. Karapapa V.K., Bainbridge B.W., and Heale J.B. Morphological and molecular characterization of Verticillium longisporum comb. nov., pathogenic to oilseed rape. Mycological Research 101 (1997) 1281-1294
27. Katan T. Vegetative compatibility in populations of Verticillium - an overview. In: Tjamos E.C., Rowe R.C., Heale J.B., and Fravel D.R. (Eds). Advances in Verticillium: research and disease management. Proceedings of the 7th International Verticillium Symposium, Athens, Greece (2000), APS Press, St Paul, Minnesota 69-86
28. Klosterman S.J., Atallah Z.K., Vallad G.E., and Subbarao V.K. Diversity, pathogenicity, and management of Verticillium species. Annual Review of Phytopathology 47 (2009) 39-62
29. Korolev N., Katan J., and Katan T. Vegetative compatibility groups of Verticillium dahliae in Israel: their distribution and association with pathogenicity. Phytopathology 90 (2000) 529-566
30. Korolev N., Pérez-Artés E., Bejarano-Alcázar J., Rodríguez-Jurado D., Katan J., Katan T., and Jiménez-Díaz R.M. Comparative study of genetic diversity and pathogenicity among populations of Verticillium dahliae from cotton in Spain and Israel. European Journal of Plant Pathology 107 (2001) 443-456
31. Leslie J.F. Fungal vegetative compatibility. Annual Review of Phytopathology 31 (1993) 127-150
32. Mercado-Blanco J., Rodríguez-Jurado D., Parrilla-Araujo S., and Jiménez-Díaz R.M. Simultaneous detection of the defoliating and nondefoliating Verticillium dahliae pathotypes in infected olive plants by duplex, nested polymerase chain reaction. Plant Disease 87 (2003) 1487-1494
33. Messner R., Schweigkofler W., Ilb M., Berg G., and Prillinger H. Molecular characterization of the plant pathogen Verticillium dahliae Kleb. using RAPD-PCR and sequencing of the 18S rRNA-gene. Journal of Phytopathology 144 (1996) 347-354
34. Pantou M.P., Strunnikova O.K., Shakhnazarova V.Y., Vishnevskaya N.A., Papalouka V.G., and Typas M.A. Molecular and immunochemical phylogeny of Verticillium species. Mycological Research 109 (2005) 889-902
35. Pegg G.F., and Brady B.L. Verticillium Wilts (2002), CABI Publishing, Wallington, UK
36. Puhalla J.E., and Hummel M. Vegetative compatibility groups within Verticillium dahliae. Phytopathology 73 (1983) 1305-1308
37. Qin Q.M., Vallad G.E., Wu B.M., and Subbarao K.V. Phylogenetic analysis of phytopathogenic isolates of Verticillium spp. Phytopathology 96 (2006) 582-592
38. Saitou N., and Nei M. The neighbour-joining method: a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution 4 (1987) 406-425
39. Sambrook J., Fritsch E.F., and Maniatis T. Molecular Cloning: a laboratory manual. 2nd edn (1989), Cold Spring Harbor Press, New York
40. Schardl C.L., and Craven K.D. Interspecific hybridization in plant-associated fungi and oomycetes: a review. Molecular Ecology 12 (2003) 2861-2873
41. Selosse M.A., and Schardl C.L. Fungal endophytes of grasses: hybrids rescued by vertical transmission? An evolutionary perspective. New Phytologist 173 (2007) 452-458
42. Sneath P.A., and Sokal R.R. Numerical Taxonomy (1973), Freeman WH and Co, San Francisco
43. Stark C. Das Auftreten der Verticillium: Tracheomykosen in Hamburger Gartenbaukulturen. Gartenbauwissenschaft 26 (1961) 493-528
44. Stevenson L.A., Fahleson J., Hu Q., and Dixelius C. Identification of the causal agent of Verticillium wilt of winter oilseed rape in Sweden, V. longisporum. Mycological Research 106 (2002) 570-578
45. Strausbaugh C.A., Schroth M.N., Weinhold A.R., and Hancock J.G. Assessment of vegetative compatibility of Verticillium dahliae tester strains and isolates from California potatoes. Phytopathology 82 (1992) 61-68
46. Subbarao K.V., Chassot A., Gordon T.R., Hubbard C., Bonello P., Mullin R., Okamoto D., Davis R.M., and Koike S.T. Genetic relationships and cross pathogenicities of Verticillium dahliae isolates from cauliflower and other crops. Phytopathology 85 (1995) 1105-1112
47. Van de Peer Y., and de Wachter R. TREECON for Windows: a software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment. Computer Applications in the Biosciences 10 (1994) 569-570
48. Van der Peer Y. Analysis of nucleotide sequences using TREECON. In: Salemi M., and Vandamme A.M. (Eds). The Phylogenetic HandBook: a practical approach to DNA and protein phylogeny (2003), Cambridge University Press, Cambridge, UK 101-136
49. Zare R., Gams W., Starink-Willemse M., and Summerberll R.C. Gibellulopsis, a suitable genus for Verticillium nigrescens, and Musicillium, a new genus for V. theobromae. Nova Hedwigia 85 (2007) 463-489
50. Zeise K., and von Tiedemann A. Morphological and physiological differentiation among vegetative compatibility groups of Verticillium dahliae in relation to V. longisporum. Journal of Phytopathology 149 (2001) 469-475
51. Zeise K., and von Tiedemann A. Host specialization among vegetative compatibility groups of Verticillium dahliae in relation to Verticillium longisporum. Journal of Phytopathology 150 (2002) 112-119
52. Zeise K., and von Tiedemann A. Application of RAPD-PCR for virulence type analysis within Verticillium dahliae and V. longisporum. Journal of Phytopathology 150 (2002) 557-563