-
1
-
-
77956641239
-
ChIP-Seq identification of weakly conserved heart enhancers
-
Blow, M.J. et al. (2010) ChIP-Seq identification of weakly conserved heart enhancers. Nat. Genet., 42, 806-810.
-
(2010)
Nat. Genet.
, vol.42
, pp. 806-810
-
-
Blow, M.J.1
-
2
-
-
38549096565
-
JASPAR, the open access database of transcription factorbinding profiles: new content and tools in the 2008 update
-
Bryne, J.C. et al. (2008) JASPAR, the open access database of transcription factorbinding profiles: new content and tools in the 2008 update. Nucleic Acids Res., 36, D102-D106.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Bryne, J.C.1
-
3
-
-
0034730161
-
Building a dictionary for genomes: identification of presumptive regulatory sites by statistical analysis
-
Bussemaker, H.J. et al. (2000) Building a dictionary for genomes: identification of presumptive regulatory sites by statistical analysis. Proc. Natl Acad. Sci. USA, 97, 10096-10100.
-
(2000)
Proc. Natl Acad. Sci. USA
, vol.97
, pp. 10096-10100
-
-
Bussemaker, H.J.1
-
4
-
-
34547594352
-
PAP: a comprehensive workbench for mammalian transcriptional regulatory sequence analysis
-
Chang, L.W. et al. (2007) PAP: a comprehensive workbench for mammalian transcriptional regulatory sequence analysis. Nucleic Acids Res., 35, W238-W244.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Chang, L.W.1
-
5
-
-
22344442009
-
Footer: a quantitative comparative genomics method for efficient recognition of cis-regulatory elements
-
Corcoran, D.L. et al. (2005) Footer: a quantitative comparative genomics method for efficient recognition of cis-regulatory elements. Genome Res., 15, 840-847.
-
(2005)
Genome Res
, vol.15
, pp. 840-847
-
-
Corcoran, D.L.1
-
6
-
-
65549104157
-
Histone modifications at human enhancers reflect global cell-type-specific gene expression
-
Heintzman, N.D. et al. (2009) Histone modifications at human enhancers reflect global cell-type-specific gene expression. Nature, 459, 108-112.
-
(2009)
Nature
, vol.459
, pp. 108-112
-
-
Heintzman, N.D.1
-
7
-
-
66249144416
-
Transcriptional dysregulation in NIPBL and cohesin mutant human cells
-
Liu, J. et al. (2009) Transcriptional dysregulation in NIPBL and cohesin mutant human cells. PLoS Biol., 7, e1000119.
-
(2009)
PLoS Biol
, vol.7
-
-
Liu, J.1
-
8
-
-
33845898164
-
ECRbase: database of evolutionary conserved regions, promoters, and transcription factor binding sites in vertebrate genomes
-
Loots, G. and Ovcharenko, I. (2007) ECRbase: database of evolutionary conserved regions, promoters, and transcription factor binding sites in vertebrate genomes. Bioinformatics, 23, 122-124.
-
(2007)
Bioinformatics
, vol.23
, pp. 122-124
-
-
Loots, G.1
Ovcharenko, I.2
-
9
-
-
33644876958
-
TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes
-
Matys, V. et al. (2006) TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes. Nucleic Acids Res., 34, D108-D110.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Matys, V.1
-
10
-
-
36949023082
-
A nucleosome-guided map of transcription factor binding sites in yeast
-
Narlikar, L. et al. (2007) A nucleosome-guided map of transcription factor binding sites in yeast. PLoS Comput. Biol., 3, e215.
-
(2007)
PLoS Comput. Biol.
, vol.3
-
-
Narlikar, L.1
-
11
-
-
77649259719
-
Genome-wide discovery of human heart enhancers
-
Narlikar, L. et al. (2010) Genome-wide discovery of human heart enhancers. Genome Res., 20, 381-392.
-
(2010)
Genome Res
, vol.20
, pp. 381-392
-
-
Narlikar, L.1
-
12
-
-
12744253685
-
Mulan: multiple-sequence local alignment and visualization for studying function and evolution
-
Ovcharenko, I. et al. (2005) Mulan: multiple-sequence local alignment and visualization for studying function and evolution. Genome Res., 15, 184-194.
-
(2005)
Genome Res
, vol.15
, pp. 184-194
-
-
Ovcharenko, I.1
-
13
-
-
78651303899
-
UniPROBE, update 2011: expanded content and search tools in the online database of protein-binding microarray data on protein-DNA interactions
-
Robasky, K. and Bulyk, M.L. (2011) UniPROBE, update 2011: expanded content and search tools in the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res., 39, D124-D128.
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Robasky, K.1
Bulyk, M.L.2
-
14
-
-
78651230601
-
Assessing computational methods of cis-regulatory module prediction
-
Su, J. et al. (2010) Assessing computational methods of cis-regulatory module prediction. PLoS Comput. Biol., 6, e1001020.
-
(2010)
PLoS Comput. Biol.
, vol.6
-
-
Su, J.1
-
15
-
-
85194972808
-
Regression shrinkage and selection via the lasso
-
Tibshirani, R. (1996) Regression shrinkage and selection via the lasso. J. R. Stat. Soc. Series B Stat Methodol, 58, 267-288.
-
(1996)
J. R. Stat. Soc. Series B Stat Methodol
, vol.58
, pp. 267-288
-
-
Tibshirani, R.1
-
16
-
-
60149091656
-
ChIP-seq accurately predicts tissue-specific activity of enhancers
-
Visel, A. et al. (2009) ChIP-seq accurately predicts tissue-specific activity of enhancers. Nature, 457, 854-858.
-
(2009)
Nature
, vol.457
, pp. 854-858
-
-
Visel, A.1
|