Hoeflea siderophila sp. nov., a new neutrophilic iron-oxidizing bacterium

Microbiology

Volumn 81, Issue 1, 2012, Pages 59-66

  Sorokina, A Yu ^a   Chernousova, E Yu ^b   Dubinina, G A ^a  

^a WINOGRADSKY INSTITUTE OF MICROBIOLOGY   (Russian Federation)

^b VORONEZH STATE UNIVERSITY   (Russian Federation)

Author keywords

genus Hoeflea; Hoeflea siderophila sp. nov; neutrophilic iron oxidizing bacteria

Indexed keywords

ALPHAPROTEOBACTERIA; BACTERIA (MICROORGANISMS); HOEFLEA; HOEFLEA PHOTOTROPHICA; PHYLLOBACTERIACEAE; RHIZOBIALES;

EID: 84857131630     PISSN: 00262617     EISSN: None     Source Type: Journal    
DOI: 10.1134/S0026261712010146     Document Type: Article

References (34)

1. Winogradsky, S., Uber Eisenbakterien, Bot. Ztg., 1888, vol. 46, pp. 261-270.
2. Halbeck, L. and Pedersen, K., Autotrophic and Mixotrophic Growth of Gallionella ferruginea, J. Gen. Microbiol., 1991, vol. 137, pp. 2657-2661.
3. Emerson, D. and Moyer, C., Isolation and Characterization of Novel Iron-Oxidizing Bacteria That Grow at Circumneutral pH, Appl. Environ. Microbiol., 1997, vol. 63, pp. 4784-4792.
4. Sobolev, D. and Roden, E. E., Characterization of a Neutrophilic, Chemolithoautotrophic Fe(II)-Oxidizing Beta-Proteobacterium from Freshwater Wetland Sediments, Geomicrobiol. J., 2004, vol. 21, pp. 1-10.
5. Emerson, D. and Moyer, C. L., Neutrophilic Fe-Oxidizing Bacteria Are Abundant at the Loihi Seamount Hydrothermal Vents and Play a Major Role in Fe Oxide Deposition, Appl. Environ. Microbiol., 2002, vol. 68, pp. 3085-3093.
6. Edwards, K. J., Rogers, D. R., Wirsen, C. O., and McCollom, T. M., Isolation and Characterization of Novel Psychrophilic, Neutrophilic, Fe-Oxidizing, Chemolithoautotrophic α- and Γ-Proteobacteria from the Deep Sea, Appl. Environ. Microbiol., 2003, vol. 69, pp. 2906-2913.
7. Emerson, D., Weiss, J. V., and Megonigal, J. P., Iron-Oxidizing Bacteria Are Associated with Ferric Hydroxide Precipitates (Fe-Plaque) on the Roots of Wetland Plants, Appl. Environ. Microbiol., 1999, vol. 65, pp. 2758-2761.
8. Weiss, J. V., Rentz, J. A., Plaia, T., Neubauer, S. C., Merrill-Floyd, M., Lilburn, T., Bradburne, C., Megonigal, J. P., and Emerson, D., Characterization of Neutrophilic Fe(II)-Oxidizing Bacteria Isolated from the Rhizosphere of Wetland Plants and Description of Ferritrophicum radicicola gen. nov. sp. nov., and Sideroxydans paludicola sp. nov., Geomicrobiol. J., 2007, vol. 24, pp. 559-570.
9. Emerson, D., Rentz, J. A., Lilburn, T. G., Davis, R. E., Aldrich, H., Chan, C., and Moyer, C. L., A Novel Lineage of Proteobacteria Involved in Formation of Marine Fe-Oxidizing Microbial Mat Communities, PLoS ONE 2: e667. doi: 10. 1371/journal. pone. 0000667.
10. Benz, M., Brune, A., and Shinck, B., Anaerobic and Aerobic Oxidation of Ferrous Iron at Neutral pH by Chemoheterotrophic Nitrate-Reducing Bacteria, Arch. Microbiol., 1998, vol. 169, pp. 159-165.
11. Weber, K. A., Hedrick, D. B., Peacock, A. D., Thrash, J. C., White, D. C., Achenbach, L. A., and Coates, J. D., Physiological and Taxonomic Description of Novel Autotrophic, Metal Oxidizing Bacterium, Pseudogulbenkiania sp. Strain 2002, Appl. Microbiol. Biothechnol., 2009, vol. 83, pp. 555-565.
12. 12-Bedürfnis phototropher Schwefelbakterien, Arch. Mikrobiol., 1966, vol. 55, pp. 245-256.
13. Hanert, H., The Genus Gallionella, in The Prokaryotes. A Handbook on Habitats, Isolation, and Identification of Bacteria., Starr, M., Trüper, H., Balows, A., and Schlegel, H., Eds., Berlin: Springer, 1981, vol. 1, pp. 509-515.
14. Reznikov, A. A., Mulikovskaya, E. P., and Sokolov, I. Yu., Metody analiza prirodnykh vod (Methods of Analysis of Natural Waters), Moscow: Nedra, 1970.
15. Murillo, F. M., Gugliuzzo, T., Basu, P., and Stolz, J. F., A Heme-C-Containing Enzyme Complex That Exhibits Nitrate and Nitrite Reductase Activity from the Dissimilatory Iron-Reducing Bacterium Geobacter metallireducens, Arch. Microbiol., 1999, vol. 172, pp. 313-320.
16. Gries-Romijn-van Eck., Physiological and Chemical Test for Drinking Water, NEN 1056, IY-2 Nederlandse Normalisatie Instituut Rijswijk, 1966.
17. Dennis, M. T., Arnaud, S. D., and Malatesta, F. J., Hydrogen Peroxide Is the End of Oxygen Reduction by the Terminal Oxidase in the Marine Bacterium Pseudomonas palustris Strain 617, FEBS Lett., 1989, vol. 247, pp. 475-479.
18. Luft, J. U., Ruthenium Red and Violet. II Fine Structure Localization in Animal Tissues, Anat. Res., 1971, vol. 171, pp. 369-415.
19. Praktikum po mikrobiologii (Practical Course in Microbiology), Egorov, N. S., Ed., Moscow: Mos. Gos. Univ., 1976, pp. 245-247.
20. Stead, D. E., Shellwood, J. E., Willson, J., and Winey, I., Evalution of a Commercial Microbial Identification System Based on Fatty Acid Profiles for Rapid, Accurate Identification of Plant Pathogenic Bacteria, J. Appl. Bacteriol., 1992, vol. 72, pp. 315-321.
21. Bej, A. K., Mahbubani, M. H., Dicesare, J. L., and Atlas, R. M., Polymerase Chain Reaction-Gene Probe Detection of Microorganisms by Using Filter-Concentrated Samples, Appl. Environ. Microbiol., 1991, vol. 57, pp. 3529-3534.
22. Ausubel, F. M., Brent, R., Kingston, R. E., Moore, D. D., Seidman, J. G., Smith, J. A., and Struhl, K., Current Protocols in Molecular Biology, New York: Wiley, 1994.
23. Owen, R. J., Hill, L. R., and Lapage, S. P., Determination of DNA Base Composition from Melting Profiles in Dilute Buffers, Biopolymers, 1969, vol. 7, pp. 503-516.
24. De Ley, J., Cattoir, H., and Reynaerts, A., The Quantitative Measurements of DNA Hybridization from Renaturation Rates, Eur. J. Biochem., 1970, vol. 12, pp. 133-140.
25. Lane, D. G., 16S/23S rRNA Sequencing, in Nucleic Acid Techniques in Bacterial Systematics, Stackebrandt, E. and Goodfellow, M., Eds., Chichester: Wiley, 1991, pp. 115-175.
26. Medlin, L., Elwood, H. J., Stickel, S., and Sogin, M. L., The Characterization of Enzymatically Amplified Eukaryotic 16S-Like rRNA-Coding Regions, Gene, 1988, vol. 71, pp. 491-499.
27. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F., and Higgins, D. G., The CLUSTAL-X Windows Interface: Flexible Strategies for Multiple Sequence Alignment Aided by Quality Analysis Tools, Nucleic Acid Res., 1997, vol. 25, pp. 4876-4882.
28. van de Peer, Y. and De Wachter, R., TREECON for Windows: A Software Package for the Construction and Drawing of Evolutionary Trees for the Microsoft Windows Environment, Comput. Appl. Biosci., 1994, vol. 10, pp. 569-570.
29. Singer, T. P. and Gutman, H., The DPNH Dehydrogenase of the Mitochondrial Respiratory Chain, Adv. Enzymol. Areas. Mol. Biol., 1971, vol. 34, pp. 79-153.
30. Biebl, H., Tindal, B. J., Pukall, R., Lünsdorf, H., Allgaier, M., and Wagner-Döbler, I., Hoeflea phototrophica sp. nov., a Novel Marine Alphaproteobacterium That Forms Bacteriochlorophyll a, Int. J. Syst. Evol. Microbiol., 2006, vol. 56, pp. 821-826.
31. Palacios, L., Arahal, D. R., Reguera, B., and Marín, I., Hoeflea alexandrii sp. nov., Isolated from the Toxic Dinoflagellate Alexandrium minutum AL1V, Int. J. Syst. Evol. Microbiol., 2006, vol. 56, pp. 1991-1995.
32. Peix, A., Rivas, R., Trujillo, M. E., Vancanneyt, M., Velázquez, E., and Willems, A., Reclassification of Agrobacterium ferrugineum LMG 128 as Hoeflea marina gen. nov., sp. nov., Int. J. Syst. Evol. Microbiol., 2005, vol. 55, pp. 1163-1166.
33. Stackebrandt, E. and Ebers, J., Taxonomic Parameters Revisited: Tarnished Gold Standards, Microbiol. Today, 2006, vol. 33, pp. 152-155.
34. Tindall, B. J., Rosselló-Móra, R., Busse, H. J., Ludwing, W., and Kämpfer, P., Notes on the Characterization of Prokaryote Strains for Taxonomic Purpose, Int. J. Syst. Evol. Microbiol., 2010, vol. 60, pp. 249-266.