메뉴 건너뛰기




Volumn 109, Issue 1-3, 2011, Pages 223-229

High-throughput pyrosequencing of the chloroplast genome of a highly neutral-lipid-producing marine pennate diatom, Fistulifera sp. strain JPCC DA0580

Author keywords

Chloroplast genome; Diatom; Endosymbiosis; Lateral gene transfer; Next generation DNA sequencing

Indexed keywords

DNA;

EID: 84856969504     PISSN: 01668595     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11120-011-9622-8     Document Type: Conference Paper
Times cited : (34)

References (23)
  • 1
    • 67349209853 scopus 로고    scopus 로고
    • Next-generation DNA sequencing techniques
    • Ansorge WJ (2009) Next-generation DNA sequencing techniques. New Biotechnol 25(4):195-203
    • (2009) New Biotechnol , vol.25 , Issue.4 , pp. 195-203
    • Ansorge, W.J.1
  • 2
    • 73249135142 scopus 로고    scopus 로고
    • Genome structure of a Saccharomyces cerevisiae strain widely used in bioethanol production
    • Argueso JL et al (2009) Genome structure of a Saccharomyces cerevisiae strain widely used in bioethanol production. Genome Res 19(12):2258-2270
    • (2009) Genome Res , vol.19 , Issue.12 , pp. 2258-2270
    • Argueso, J.L.1
  • 3
    • 6044252163 scopus 로고    scopus 로고
    • The genome of the diatom Thalassiosira pseudonana: Ecology, evolution, and metabolism
    • Armbrust EV et al (2004) The genome of the diatom Thalassiosira pseudonana: Ecology, evolution, and metabolism. Science 306(5693):79-86
    • (2004) Science , vol.306 , Issue.5693 , pp. 79-86
    • Armbrust, E.V.1
  • 4
    • 56249098614 scopus 로고    scopus 로고
    • The Phaeodactylum genome reveals the evolutionary history of diatom genomes
    • Bowler C et al (2008) The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Nature 456(7219): 239-244
    • (2008) Nature , vol.456 , Issue.7219 , pp. 239-244
    • Bowler, C.1
  • 6
    • 40749117710 scopus 로고    scopus 로고
    • GenomeVx: Simple web-based creation of editable circular chromosome maps
    • Conant GC, Wolfe KH (2008) GenomeVx: Simple web-based creation of editable circular chromosome maps. Bioinformatics 24(6): 861-862
    • (2008) Bioinformatics , vol.24 , Issue.6 , pp. 861-862
    • Conant, G.C.1    Wolfe, K.H.2
  • 7
    • 64249131483 scopus 로고    scopus 로고
    • Enhancement of lipid production using biochemical, genetic and transcription factor engineering approaches
    • Courchesne NMD, Parisien A, Wang B, Lan CQ (2009) Enhancement of lipid production using biochemical, genetic and transcription factor engineering approaches. J Biotechnol 141(1-2): 31-41
    • (2009) J Biotechnol , vol.141 , Issue.1-2 , pp. 31-41
    • Courchesne, N.M.D.1    Parisien, A.2    Wang, B.3    Lan, C.Q.4
  • 8
    • 0032531850 scopus 로고    scopus 로고
    • Silicon-isotope composition of diatoms as an indicator of past oceanic change
    • De La Rocha CL, Brzezinski MA, DeNiro MJ, Shemesh A (1998) Silicon-isotope composition of diatoms as an indicator of past oceanic change. Nature 395(6703):680-683
    • (1998) Nature , vol.395 , Issue.6703 , pp. 680-683
    • De La Rocha, C.L.1    Brzezinski, M.A.2    DeNiro, M.J.3    Shemesh, A.4
  • 9
    • 0001914227 scopus 로고
    • Culture of phytoplankton for feeding marine invertebrates
    • In: Smith WL, Chanley MH (eds), Plenum Press, New York
    • Guillard RRL (1975) Culture of phytoplankton for feeding marine invertebrates. In: Smith WL, Chanley MH (eds) Culture of marine invertebrate animals. Plenum Press, New York, pp 26-60
    • (1975) Culture of Marine Invertebrate Animals , pp. 26-60
    • Guillard, R.R.L.1
  • 10
    • 59349101382 scopus 로고    scopus 로고
    • Advantages and limitations of next-generation sequencing technologies: A comparison of electrophoresis and non-electrophoresis methods
    • Hert DG, Fredlake CP, Barron AE (2008) Advantages and limitations of next-generation sequencing technologies: A comparison of electrophoresis and non-electrophoresis methods. Electrophoresis 29(23):4618-4626
    • (2008) Electrophoresis , vol.29 , Issue.23 , pp. 4618-4626
    • Hert, D.G.1    Fredlake, C.P.2    Barron, A.E.3
  • 11
    • 0026904647 scopus 로고
    • Nucleotide sequence of diatom plasmids: Identification of open reading frames with similarity to site-specific recombinases
    • Hildebrand M, Hasegawa P, Ord RW, Thorpe VS, Glass CA, Volcani BE (1992) Nucleotide sequence of diatom plasmids: Identification of open reading frames with similarity to site-specific recombinases. Plant Mol Biol 19(5):759-770
    • (1992) Plant Mol Biol , vol.19 , Issue.5 , pp. 759-770
    • Hildebrand, M.1    Hasegawa, P.2    Ord, R.W.3    Thorpe, V.S.4    Glass, C.A.5    Volcani, B.E.6
  • 13
    • 77956530111 scopus 로고    scopus 로고
    • The complete plastid genomes of the two 'dinotoms' Durinskia baltica and Kryptoperidinium foliaceum
    • Imanian B, Pombert JF, Keeling PJ (2010) The complete plastid genomes of the two 'dinotoms' Durinskia baltica and Kryptoperidinium foliaceum. PLoS One 5(5):e10711
    • (2010) PLoS One , vol.5 , Issue.5
    • Imanian, B.1    Pombert, J.F.2    Keeling, P.J.3
  • 15
    • 0030854739 scopus 로고    scopus 로고
    • TRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
    • Lowe TM, Eddy SR (1997) tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res 25(5):955-964
    • (1997) Nucleic Acids Res , vol.25 , Issue.5 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2
  • 16
    • 57849105843 scopus 로고    scopus 로고
    • Directed mutagenesis of the transmembrane domain of the PsbL subunit of photosystem II in Synechocystis sp. PCC 6803
    • Luo H, Eaton-Rye JJ (2008) Directed mutagenesis of the transmembrane domain of the PsbL subunit of photosystem II in Synechocystis sp. PCC 6803. Photosynth Res 98(1-3): 337-347
    • (2008) Photosynth Res , vol.98 , Issue.1-3 , pp. 337-347
    • Luo, H.1    Eaton-Rye, J.J.2
  • 17
    • 77953006433 scopus 로고    scopus 로고
    • Marine diatom, Navicula sp. strain JPCC DA0580 and marine green alga, Chlorella sp. strain NKG400014 as potential sources for biodiesel production
    • Matsumoto M, Sugiyama H, Maeda Y, Sato R, Tanaka T, Matsunaga T (2010) Marine diatom, Navicula sp. strain JPCC DA0580 and marine green alga, Chlorella sp. strain NKG400014 as potential sources for biodiesel production. Appl Biochem Biotechnol 161:483-490
    • (2010) Appl Biochem Biotechnol , vol.161 , pp. 483-490
    • Matsumoto, M.1    Sugiyama, H.2    Maeda, Y.3    Sato, R.4    Tanaka, T.5    Matsunaga, T.6
  • 18
    • 33947414878 scopus 로고    scopus 로고
    • Chloroplast genomes of the diatoms Phaeodactylum tricornutum and Thalassiosira pseudonana: Comparison with other plastid genomes of the red lineage
    • Oudot-Le Secq MP, Grimwood J, Shapiro H, Armbrust EV, Bowler C, Green BR (2007) Chloroplast genomes of the diatoms Phaeodactylum tricornutum and Thalassiosira pseudonana: Comparison with other plastid genomes of the red lineage. Mol Genet Genomics 277(4):427-439
    • (2007) Mol Genet Genomics , vol.277 , Issue.4 , pp. 427-439
    • Oudot-Le Secq, M.P.1    Grimwood, J.2    Shapiro, H.3    Armbrust, E.V.4    Bowler, C.5    Green, B.R.6
  • 19
    • 58149269804 scopus 로고    scopus 로고
    • Microalgae for oil: Strain selection, induction of lipid synthesis and outdoor mass cultivation in a low-cost photobioreactor
    • Rodolfi L, Zittelli GC, Bassi N, Padovani G, Biondi N, Bonini G, Tredici MR (2009) Microalgae for oil: Strain selection, induction of lipid synthesis and outdoor mass cultivation in a low-cost photobioreactor. Biotechnol Bioeng 102(1):100-112
    • (2009) Biotechnol Bioeng , vol.102 , Issue.1 , pp. 100-112
    • Rodolfi, L.1    Zittelli, G.C.2    Bassi, N.3    Padovani, G.4    Biondi, N.5    Bonini, G.6    Tredici, M.R.7
  • 22
    • 37749031255 scopus 로고    scopus 로고
    • Next-generation sequencing transforms today's biology
    • Schuster SC (2008) Next-generation sequencing transforms today's biology. Nat Methods 5(1):16-18
    • (2008) Nat Methods , vol.5 , Issue.1 , pp. 16-18
    • Schuster, S.C.1
  • 23
    • 77951914538 scopus 로고    scopus 로고
    • The chloroplast genome sequence of mungbean (Vigna radiata) determined by high-throughput pyrosequencing: Structural organization and phylogenetic relationships
    • Tangphatsornruang S, Sangsrakru D, Chanprasert J, Uthaipaisanwong P, Yoocha T, Jomchai N, Tragoonrung S (2010) The chloroplast genome sequence of mungbean (Vigna radiata) determined by high-throughput pyrosequencing: Structural organization and phylogenetic relationships. DNA Res 17(1):11-22
    • (2010) DNA Res , vol.17 , Issue.1 , pp. 11-22
    • Tangphatsornruang, S.1    Sangsrakru, D.2    Chanprasert, J.3    Uthaipaisanwong, P.4    Yoocha, T.5    Jomchai, N.6    Tragoonrung, S.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.