Characterization of rhizobia from legumes of agronomic interest grown in semi-arid areas of Central Spain relates genetic differences to soil properties

Journal of Basic Microbiology

Volumn 52, Issue 1, 2012, Pages 66-78

  Ruiz Díez, Beatriz ^a   Fajardo, Susana ^a   del Rosario de Felipe, María ^a   Fernández Pascual, Mercedes ^a  

^a INSTITUTO DE CIENCIAS AGRARIAS   (Spain)

Author keywords

Agricultural legumes; Genotypic characterization; Rhizobial diversity; Soil features; Stress tolerance

Indexed keywords

BACTERIAL DNA; BACTERIAL RNA; RNA 16S;

ARTICLE; CLASSIFICATION; FABACEAE; GENETICS; ISOLATION AND PURIFICATION; MICROBIOLOGY; NODULATION; PHENOTYPE; PHYLOGENY; RHIZOBIUM; RHIZOBIUM LEGUMINOSARUM; SOIL; SPAIN; SYMBIOSIS;

DNA, BACTERIAL; FABACEAE; PHENOTYPE; PHYLOGENY; RHIZOBIUM; RHIZOBIUM LEGUMINOSARUM; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; ROOT NODULES, PLANT; SOIL; SPAIN; SYMBIOSIS;

BRADYRHIZOBIUM CANARIENSE; CICER ARIETINUM; LATHYRUS SATIVUS; LENS CULINARIS; LUPINUS; MEDICAGO SATIVA; MESORHIZOBIUM CICERI; PHASEOLUS VULGARIS; PISUM SATIVUM; RHIZOBIUM GALLICUM; RHIZOBIUM LEGUMINOSARUM; RHIZOBIUM LEGUMINOSARUM BV. VICIAE; SINORHIZOBIUM MELILOTI; VICIA;

EID: 84856904401     PISSN: 0233111X     EISSN: 15214028     Source Type: Journal    
DOI: 10.1002/jobm.201100058     Document Type: Article

References (35)

1. Herridge, D.F., Peoples, M.B., Boddey, M.B., 2008. Global inputs of biological nitrogen fixation in agricultural systems. Plant Soil, 311, 1-18.
2. Howieson, J., Ballard, R., 2004. Optimising the legume symbiosis in stressful and competitive environments within southern Australia-some contemporary thoughts. Soil Biol. Biochem., 36, 1261-1273.
3. Kuykendall, L.D., 2005. Family I. Rhizobiaceae. In: Brenner, D.J., Krieg, N.R., Staley, J.T., Garrity, G.M. (eds.), Bergey's Manual of Systematic Bacteriology, Vol. 2, part C. Springer, New York, pp. 324-361.
4. Sawada, H., Kuykendall, J.M., Young, M., 2003. Changing concepts in the systematics of bacterial nitrogen-fixing legume symbionts. J. Gen. Appl. Microbiol., 49, 155-179.
5. Chen, W.M., de Faria, S.M., Straliotto, R., Pitard, R.M. et al., 2005. Proof that the Burkholderia strains form effective symbioses with the legumes: a study of novel Mimosa -nodulating strains from South America. Appl. Environ. Microbiol., 71, 7461-7471.
6. Ruiz-Díez, B., Fajardo, S., Puertas-Mejía, M.A., de Felipe, R., Fernández-Pascual, M., 2009. Stress tolerance, genetic analysis and symbiotic properties of root-nodulating bacteria isolated from Mediterranean leguminous shrubs in Central Spain. Arch. Microbiol., 191, 35-46.
7. Slattery, J.F., Pearce, D.J., Slattery, W.J., 2004. Effect of resident rhizobial communities and soil type on the effective nodulation of pulse legumes. Soil Biol. Biochem., 36, 1339-1346.
8. Vessey, J.K., Cheminig'wa, G.N., 2006. The genetic diversity of Rhizobium leguminosarum bv. viciae in cultivated soils of the eastern Canadian prairie. Soil Biol. Biochem., 38, 153-163.
9. Cheminig'wa, G.N., Vessey, J.K., 2006. The abundance and efficacy of Rhizobium leguminosarum bv. viciae in cultivated soils of the eastern Canadian prairie. Soil Biol. Biochem., 38, 294-302.
10. Brockwell, J., Bottomley, P.J., Thies, J.E., 1995. Manipulation of rhizobia microflora for improving legume productivity and soil fertility: a critical assessment. Plant Soil, 174, 143-180.
11. Pastor J, Hernández, A. J., Prieto, N., Fernández-Pascual, M., 2003. Accumulating behaviour of Lupinus albus L. growing in a normal and a decalcified calcic luvisol polluted with Zn. J. Plant Physiol., 160, 1455-1463.
12. Vincent, J.M., 1970. A Manual for the Practical Study of Root Nodule Bacteria. Blackwell Scientific, Oxford.
13. Laguerre, G., Allard, M.R., Revoy, F., Amarger, N., 1994. Rapid identification of rhizobia by restriction fragment length polymorphism analysis of PCR-amplified 16S rRNA genes. Appl. Environ. Microbiol., 60, 56-63.
14. Weisburg, W.G., Barns, S.M., Pelletier, D.A., Lane, D.J., 1991. 16S ribosomal DNA amplification for phylogenetic study. J. Bacteriol., 173, 697-703.
15. Laguerre, G., Nour, S.M., Macheret, V., Sanjuan, J. et al., 2001. Classification of rhizobia based on Nod C and Nif H gene analysis reveals a close phylogenetic relationship among Phaseolus vulgaris symbionts. Microbiology, 147, 981-993.
16. Alvárez-Martínez, E.R., Valverde, A., Ramírez-Bahena, M.H., García-Fraile, P. et al., 2009. The analysis of core and symbiotic genes of rhizobia nodulating Vicia from different continents reveals their common phylogenetic origin and suggests the distribution of Rhizobium leguminosarum strains together with Vicia seeds. Arch. Microbiol., 191, 659-668.
17. Lane, D.J., 1991. 16S/23S rRNA sequencing. In: Strackebrandt, E., Goodfellow, M. (eds.), Nucleic Acid Techniques in Bacterial Systematics. Wiley, Chichester, pp. 115-175.
18. Kimura, M., 1980. A simple method for estimating evolutionary rates of nucleotide substitution through comparative studies of nucleotide sequences. J. Mol. Evol., 4, 111-120.
19. Laguerre, G., Mavingui, P., Allard, M.R., Charnay, M.P. et al., 1996. Typing of rhizobia by PCR DNA fingerprinting and PCR-restriction fragment length polymorphism analysis of chromosomal and symbiotic gene regions: application to Rhizobium leguminosarum and its different biovars. Appl. Environ. Microbiol., 62, 2029-2036.
20. Vinuesa, P., Rademaker, J.L.W., Bruijn, F.J., Werner, D., 1998. Genotypic characterization of Bradyrhizobium strains nodulating endemic woody legumes of the Canary Islands by PCR-restriction fragment length polymorphism analysis of genes encoding 16S rRNA (16S rDNA) and 16S-23S rDNA intergenic spacers, repetitive extragenic palindromic PCR genomic fingerprinting, and partial 16S rDNA sequencing. Appl. Environ. Microbiol., 64, 2096-2104.
21. AL. R. trifolii is a later synonym of R. leguminosaru m. Reclassification of the strain R. leguminosarum DSM 30132 (=NCIMB 11478) as Rhizobium pisi sp. nov. Int. J. Syst. Evol. Microbiol., 58, 2484-2490.
22. Zhang, X., Kosier, B., Priefer, U.B., 2001. Genetic diversity of indigenous Rhizobium leguminosarum bv. viciae isolates nodulating two different host plants during soil restoration with alfalfa. Mol. Ecol., 10, 2297-2305.
23. Comunidad Autónoma de Castilla-La Mancha (ed.), 2008. Programa de Desarrollo Rural de Castilla-La Mancha 2007-2013, Vol.1. Toledo.
24. Fierer, N., Jackson, R.B., 2006. The diversity and biogeography of soil bacterial communities. PNAS, 103, 626-631.
25. Giongo, A., Ambrosini, A., Vargas, L.K., Freire, J.R.J. et al., 2008. Evaluation of genetic diversity of bradyrhizobia strains nodulating soybean (Glycine max (L.) Merrill) isolated from South Brazilian fields. Appl. Soil Ecol., 38, 261-269.
26. Yates, R.J., Howieson, J.G., Nandasena, K.G., O'Hara, G.W., 2004. Root-nodule bacteria of indigenous legumes in the north-west of Western Australia and their interaction with exotic legumes. Soil Biol. Biochem., 36, 1319-1329.
27. Kulkarni, S., Nautiyal, C.S., 1999. Characterization of high-tolerant rhizobia isolated from Prosopis juliflora grown in alkaline soil. J. Gen. Appl. Microbiol., 45, 213-220.
28. Hungría, M., Chueire, L.M.O., Coca, R.G., Megías, M., 2001. Preliminary characterization of fast growing rhizobial strains isolated from soybean nodules in Brazil. Soil Biol. Biochem., 33, 1349-1361.
29. Howieson, J.G., Fillery, I.R.P., Legocki, A.B., Sikorski, M.M. et al., 1998. Nodulation, nitrogen fixation and nitrogen balance. In: Gladstones, J.S., Atkins, C.A., Hamblin, J. (eds.), Lupins as Crop Plants: Biology, Production and Utilization. CAB International, Wallingford Oxon, pp. 149-180.
30. Pastor, J., Hernández, A.J., Prieto, N., Fernández-Pascual, M., 2003. Accumulating behaviour of Lupinus albus L. growing in a normal and a decalcified calcic luvisol polluted with Zn. J. Plant Physiol., 160, 1455-1463.
31. Depret, G., Houot, S., Allard, M.R., Breuil, M.C. et al., 2004. Long-term effects of crop management on Rhizobium leguminosarum biovar viciae populations. FEMS Microbiol. Ecol., 51, 87-97.
32. Moschetti, G., Peluso, A.L., Protopapa, A., Anastasio, F. et al., 2005. Use of nodulation pattern, stress tolerance, nod C gene amplification, RAPD-PCR and RFLP-16S rDNA analysis to discriminate genotypes of Rhizobium leguminosarum biovar viciae. System. Appl. Microbiol., 28, 619-631.
33. Lewis, G., Schrire, B., Mackinder, B., Lock, M. (eds.), 2005. Legumes of the World. Kew, UK: Royal Botanic Gardens.
34. Demezas, D.H., Reardon, T.B., Watson, J.M., Gibson, A.H., 1991. Genetic diversity among Rhizobium leguminosarum bv. trifolii strains revealed by allozyme and restriction fragment length polymorphism analyses. Appl. Environ. Microbiol., 57, 3489-3495.
35. 2 fixation among rhizobia nodulating red clover in soils of northern Scandinavia. J. Appl. Microbiol., 102, 16525-1635.