-
1
-
-
0027324441
-
The eubacterium Ectothiorhodospira halophila is negatively phototactic, with a wavelength dependence that fits the absorption spectrum of the photoactive yellow protein
-
Sprenger, W. W., Hoff, W. D., Armitage, J. P., and Hellingwerf, K. J. (1993) The eubacterium Ectothiorhodospira halophila is negatively phototactic, with a wavelength dependence that fits the absorption spectrum of the photoactive yellow protein J. Bacteriol. 175, 3096-3104 (Pubitemid 23148746)
-
(1993)
Journal of Bacteriology
, vol.175
, Issue.10
, pp. 3096-3104
-
-
Sprenger, W.W.1
Hoff, W.D.2
Armitage, J.P.3
Hellingwerf, K.J.4
-
2
-
-
0028577744
-
Complete chemical structure of photoactive yellow protein: Novel thioester-linked 4-hydroxycinnamyl chromophore and photocycle chemistry
-
Baca, M., Borgstahl, G. E., Boissinot, M., Burke, P. M., Williams, D. R., Slater, K. A., and Getzoff, E. D. (1994) Complete chemical structure of photoactive yellow protein: Novel thioester-linked 4-hydroxycinnamyl chromophore and photocycle chemistry Biochemistry 33, 14369-14377
-
(1994)
Biochemistry
, vol.33
, pp. 14369-14377
-
-
Baca, M.1
Borgstahl, G.E.2
Boissinot, M.3
Burke, P.M.4
Williams, D.R.5
Slater, K.A.6
Getzoff, E.D.7
-
3
-
-
0028832513
-
Resonance Raman evidence that the thioester-linked 4-hydroxycinnamyl chromophore of photoactive yellow protein is deprotonated
-
Kim, M., Mathies, R. A., Hoff, W. D., and Hellingwerf, K. J. (1995) Resonance Raman evidence that the thioester-linked 4-hydroxycinnamyl chromophore of photoactive yellow protein is deprotonated Biochemistry 34, 12669-12672
-
(1995)
Biochemistry
, vol.34
, pp. 12669-12672
-
-
Kim, M.1
Mathies, R.A.2
Hoff, W.D.3
Hellingwerf, K.J.4
-
4
-
-
0030446427
-
Glu46 donates a proton to the 4-hydroxycinnamate anion chromophore during the photocycle of photoactive yellow protein
-
DOI 10.1021/bi9623035
-
Xie, A., Hoff, W. D., Kroon, A. R., and Hellingwerf, K. J. (1996) Glu46 donates a proton to the 4-hydroxycinnamate anion chromophore during the photocycle of photoactive yellow protein Biochemistry 35, 14671-14678 (Pubitemid 26423797)
-
(1996)
Biochemistry
, vol.35
, Issue.47
, pp. 14671-14678
-
-
Xie, A.1
Hoff, W.D.2
Kroon, A.R.3
Hellingwerf, K.J.4
-
5
-
-
0034620544
-
Protonation states and pH titration in the photocycle of photoactive yellow protein
-
DOI 10.1021/bi991513p
-
Demchuk, E., Genick, U. K., Woo, T. T., Getzoff, E. D., and Bashford, D. (2000) Protonation states and pH titration in the photocycle of photoactive yellow protein Biochemistry 39, 1100-1113 (Pubitemid 30075339)
-
(2000)
Biochemistry
, vol.39
, Issue.5
, pp. 1100-1113
-
-
Demchuk, E.1
Genick, U.K.2
Woo, T.T.3
Getzoff, E.D.4
Bashford, D.5
-
6
-
-
0029110488
-
1.4 Å structure of photoactive yellow protein, a cytosolic photoreceptor: Unusual fold, active site, and chromophore
-
Borgstahl, G. E., Williams, D. R., and Getzoff, E. D. (1995) 1.4 Å structure of photoactive yellow protein, a cytosolic photoreceptor: Unusual fold, active site, and chromophore Biochemistry 34, 6278-6287
-
(1995)
Biochemistry
, vol.34
, pp. 6278-6287
-
-
Borgstahl, G.E.1
Williams, D.R.2
Getzoff, E.D.3
-
7
-
-
0043125483
-
Anticipatory active-site motions and chromophore distortion prime photoreceptor PYP for light activation
-
DOI 10.1038/nsb958
-
Getzoff, E. D., Gutwin, K. N., and Genick, U. K. (2003) Anticipatory active-site motions and chromophore distortion prime photoreceptor PYP for light activation Nat. Struct. Biol. 10, 663-668 (Pubitemid 36944721)
-
(2003)
Nature Structural Biology
, vol.10
, Issue.8
, pp. 663-668
-
-
Getzoff, E.D.1
Gutwin, K.N.2
Genick, U.K.3
-
8
-
-
58849085005
-
Low-barrier hydrogen bond in photoactive yellow protein
-
Yamaguchi, S., Kamikubo, H., Kurihara, K., Kuroki, R., Niimura, N., Shimizu, N., Yamazaki, Y., and Kataoka, M. (2009) Low-barrier hydrogen bond in photoactive yellow protein Proc. Natl. Acad. Sci. U.S.A. 106, 440-444
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 440-444
-
-
Yamaguchi, S.1
Kamikubo, H.2
Kurihara, K.3
Kuroki, R.4
Niimura, N.5
Shimizu, N.6
Yamazaki, Y.7
Kataoka, M.8
-
9
-
-
67249133227
-
Hydrogen bond dynamics in the active site of photoactive yellow protein
-
Sigala, P. A., Tsuchida, M. A., and Herschlag, D. (2009) Hydrogen bond dynamics in the active site of photoactive yellow protein Proc. Natl. Acad. Sci. U.S.A. 106, 9232-9237
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 9232-9237
-
-
Sigala, P.A.1
Tsuchida, M.A.2
Herschlag, D.3
-
10
-
-
0028030684
-
Low-barrier hydrogen bonds and enzymic catalysis
-
Cleland, W. W. and Kreevoy, M. M. (1994) Low-barrier hydrogen bonds and enzymic catalysis Science 264, 1887-1890 (Pubitemid 24245628)
-
(1994)
Science
, vol.264
, Issue.5167
, pp. 1887-1890
-
-
Cleland, W.W.1
Kreevoy, M.M.2
-
11
-
-
0028040716
-
A low-barrier hydrogen bond in the catalytic triad of serine proteases
-
Frey, P. A., Whitt, S. A., and Tobin, J. B. (1994) A low-barrier hydrogen bond in the catalytic triad of serine proteases Science 264, 1927-1930 (Pubitemid 24245638)
-
(1994)
Science
, vol.264
, Issue.5167
, pp. 1927-1930
-
-
Frey, P.A.1
Whitt, S.A.2
Tobin, J.B.3
-
12
-
-
2442606719
-
The Low Barrier Hydrogen Bond (LBHB) Proposal Revisited: The Case of the Asp His Pair in Serine Proteases
-
DOI 10.1002/prot.20096
-
Schutz, C. N. and Warshel, A. (2004) The low barrier hydrogen bond (LBHB) proposal revisited: The case of the Asp...His pair in serine proteases Proteins 55, 711-723 (Pubitemid 38620094)
-
(2004)
Proteins: Structure, Function and Genetics
, vol.55
, Issue.3
, pp. 711-723
-
-
Schutz, C.N.1
Warshel, A.2
-
13
-
-
0034636790
-
Water structural changes involved in the activation process of photoactive yellow protein
-
DOI 10.1021/bi000357f
-
Kandori, H., Iwata, T., Hendriks, J., Maeda, A., and Hellingwerf, K. J. (2000) Water structural changes involved in the activation process of photoactive yellow protein Biochemistry 39, 7902-7909 (Pubitemid 30452363)
-
(2000)
Biochemistry
, vol.39
, Issue.27
, pp. 7902-7909
-
-
Kandori, H.1
Iwata, T.2
Hendriks, J.3
Maeda, A.4
Hellingwerf, K.J.5
-
14
-
-
84856010348
-
Energetics of short hydrogen bonds in photoactive yellow protein
-
Saito, K. and Ishikita, H. (2012) Energetics of short hydrogen bonds in photoactive yellow protein Proc. Natl. Acad. Sci. U.S.A. 109, 167-172
-
(2012)
Proc. Natl. Acad. Sci. U.S.A.
, vol.109
, pp. 167-172
-
-
Saito, K.1
Ishikita, H.2
-
15
-
-
0014203499
-
Acid-base titrations in concentrated guanidine hydrochloride. Dissociation constants of the guamidinium ion and of some amino acids
-
Nozaki, Y. and Tanford, C. (1967) Acid-base titrations in concentrated guanidine hydrochloride. Dissociation constants of the guamidinium ion and of some amino acids J. Am. Chem. Soc. 89, 736-742
-
(1967)
J. Am. Chem. Soc.
, vol.89
, pp. 736-742
-
-
Nozaki, Y.1
Tanford, C.2
-
16
-
-
0029731183
-
Spectral tuning, fluorescence, and photoactivity in hybrids of photoactive yellow protein, reconstituted with native or modified chromophores
-
DOI 10.1074/jbc.271.50.31949
-
Kroon, A. R., Hoff, W. D., Fennema, H. P., Gijzen, J., Koomen, G. J., Verhoeven, J. W., Crielaard, W., and Hellingwerf, K. J. (1996) Spectral tuning, fluorescence, and photoactivity in hybrids of photoactive yellow protein, reconstituted with native or modified chromophores J. Biol. Chem. 271, 31949-31956 (Pubitemid 26422219)
-
(1996)
Journal of Biological Chemistry
, vol.271
, Issue.50
, pp. 31949-31956
-
-
Kroon, A.R.1
Hoff, W.D.2
Fennema, H.P.M.3
Gijzen, J.4
Koomen, G.-J.5
Verhoeven, J.W.6
Crielaard, W.7
Hellingwerf, K.J.8
-
18
-
-
34249694922
-
-
in (Kohen, A. and Limbach, H.-H. Eds.) pp, CRC Press, Boca Raton, FL.
-
Frey, P. A. (2006) in Isotope Effects in Chemistry and Biology (Kohen, A. and Limbach, H.-H., Eds.) pp 975-993, CRC Press, Boca Raton, FL.
-
(2006)
Isotope Effects in Chemistry and Biology
, pp. 975-993
-
-
Frey, P.A.1
-
19
-
-
0000741348
-
Strong hydrogen bonding in molecules and enzymatic complexes
-
Frey, P. A. (2001) Strong hydrogen bonding in molecules and enzymatic complexes Magn. Reson. Chem. 39, S190-S198
-
(2001)
Magn. Reson. Chem.
, vol.39
-
-
Frey, P.A.1
-
20
-
-
2942599831
-
Short hydrogen bonds in photoactive yellow protein
-
DOI 10.1107/S090744490400616X
-
Anderson, S., Crosson, S., and Moffat, K. (2004) Short hydrogen bonds in photoactive yellow protein Acta Crystallogr. D60, 1008-1016 (Pubitemid 41295439)
-
(2004)
Acta Crystallographica Section D: Biological Crystallography
, vol.60
, Issue.6
, pp. 1008-1016
-
-
Anderson, S.1
Crosson, S.2
Moffat, K.3
-
21
-
-
0017100947
-
Theoretical studies of enzymic reactions: Dielectric, electrostatic and steric stabilization of the carbonium ion in the reaction of lysozyme
-
Warshel, A. and Levitt, M. (1976) Theoretical studies of enzymic reactions: Dielectric, electrostatic and steric stabilization of the carbonium ion in the reaction of lysozyme J. Mol. Biol. 103, 227-249
-
(1976)
J. Mol. Biol.
, vol.103
, pp. 227-249
-
-
Warshel, A.1
Levitt, M.2
-
22
-
-
84856879001
-
-
version 5.6 () Schrödinger, LLC, New York.
-
QSite, version 5.6 (2010) Schrödinger, LLC, New York.
-
(2010)
QSite
-
-
-
23
-
-
20544450115
-
Nuclear-magnetic-resonance shielding constants calculated by pseudospectral methods
-
Cao, Y., Beachy, M. D., Braden, D. A., Morrill, L., Ringnalda, M. N., and Friesner, R. A. (2005) Nuclear-magnetic-resonance shielding constants calculated by pseudospectral methods J. Chem. Phys. 122, 224116
-
(2005)
J. Chem. Phys.
, vol.122
, pp. 224116
-
-
Cao, Y.1
Beachy, M.D.2
Braden, D.A.3
Morrill, L.4
Ringnalda, M.N.5
Friesner, R.A.6
-
24
-
-
84856837913
-
-
version 7.5 () Schrödinger, LLC, New York.
-
Jaguar, version 7.5 (2008) Schrödinger, LLC, New York.
-
(2008)
Jaguar
-
-
-
25
-
-
77949876677
-
Predicted crystal structures of tetramethylsilane and tetramethylgermane and an experimental low-temperature structure of tetramethylsilane
-
Wolf, A. K., Glinnemann, J., Fink, L., Alig, E., Bolte, M., and Schmidt, M. U. (2010) Predicted crystal structures of tetramethylsilane and tetramethylgermane and an experimental low-temperature structure of tetramethylsilane Acta Crystallogr. B66, 229-236
-
(2010)
Acta Crystallogr.
, vol.66
, pp. 229-236
-
-
Wolf, A.K.1
Glinnemann, J.2
Fink, L.3
Alig, E.4
Bolte, M.5
Schmidt, M.U.6
-
27
-
-
69249203678
-
OHO hydrogen bond geometries and NMR chemical shifts: From equilibrium structures to geometric H/D isotope effects, with applications for water, protonated water, and compressed ice
-
Limbach, H.-H., Tolstoy, P. M., Pérez-Hernández, N., Guo, J., Shenderovich, I. G., and Denisov, G. S. (2009) OHO hydrogen bond geometries and NMR chemical shifts: From equilibrium structures to geometric H/D isotope effects, with applications for water, protonated water, and compressed ice Isr. J. Chem. 49, 199-216
-
(2009)
Isr. J. Chem.
, vol.49
, pp. 199-216
-
-
Limbach, H.-H.1
Tolstoy, P.M.2
Pérez-Hernández, N.3
Guo, J.4
Shenderovich, I.G.5
Denisov, G.S.6
-
28
-
-
77956715871
-
Hydrogen bonding and chemical reactivity
-
Hibbert, F. and Emsley, J. (1990) Hydrogen bonding and chemical reactivity Adv. Phys. Org. Chem. 26, 255-379
-
(1990)
Adv. Phys. Org. Chem.
, vol.26
, pp. 255-379
-
-
Hibbert, F.1
Emsley, J.2
-
29
-
-
6244295671
-
Lengthening of the covalent X-H bond in heteronuclear hydrogen bonds quantified from organic and organometallic neutron crystal structures
-
Steiner, T. (1998) Lengthening of the covalent X-H bond in heteronuclear hydrogen bonds quantified from organic and organometallic neutron crystal structures J. Phys. Chem. A 102, 7041-7052 (Pubitemid 128611491)
-
(1998)
Journal of Physical Chemistry A
, vol.102
, Issue.35
, pp. 7041-7052
-
-
Steiner, T.1
-
30
-
-
79957744586
-
Reaction pathways of proton transfer in hydrogen-bonded phenol-carboxylate complexes explored by combined UV-vis and NMR spectroscopy
-
Koeppe, B., Tolstoy, P. M., and Limbach, H. H. (2011) Reaction pathways of proton transfer in hydrogen-bonded phenol-carboxylate complexes explored by combined UV-vis and NMR spectroscopy J. Am. Chem. Soc. 133, 7897-7908
-
(2011)
J. Am. Chem. Soc.
, vol.133
, pp. 7897-7908
-
-
Koeppe, B.1
Tolstoy, P.M.2
Limbach, H.H.3
-
31
-
-
33646371941
-
Low-barrier hydrogen bond hypothesis in the catalytic triad residue of serine proteases: Correlation between structural rearrangement and chemical shifts in the acylation proress
-
DOI 10.1021/bi051515b
-
Ishida, T. (2006) Low-barrier hydrogen bond hypothesis in the catalytic triad residue of serine proteases: Correlation between structural rearrangement and chemical shifts in the acylation process Biochemistry 45, 5413-5420 (Pubitemid 43673172)
-
(2006)
Biochemistry
, vol.45
, Issue.17
, pp. 5413-5420
-
-
Ishida, T.1
-
32
-
-
0001619812
-
Symmetries of hydrogen bonds in monoanions of dicarboxylic acids
-
Perrin, C. L. and Thoburn, J. D. (1992) Symmetries of hydrogen bonds in monoanions of dicarboxylic acids J. Am. Chem. Soc. 114, 8559-8565
-
(1992)
J. Am. Chem. Soc.
, vol.114
, pp. 8559-8565
-
-
Perrin, C.L.1
Thoburn, J.D.2
-
33
-
-
78650460393
-
Are short, low-barrier hydrogen bonds unusually strong?
-
Perrin, C. L. (2010) Are short, low-barrier hydrogen bonds unusually strong? Acc. Chem. Res. 43, 1550-1557
-
(2010)
Acc. Chem. Res.
, vol.43
, pp. 1550-1557
-
-
Perrin, C.L.1
-
34
-
-
0030462453
-
Energy considerations show that low-barrier hydrogen bonds do not offer a catalytic advantage over ordinary hydrogen bonds
-
DOI 10.1073/pnas.93.24.13665
-
Warshel, A. and Papazyan, A. (1996) Energy considerations show that low-barrier hydrogen bonds do not offer a catalytic advantage over ordinary hydrogen bonds Proc. Natl. Acad. Sci. U.S.A. 93, 13665-13670 (Pubitemid 26424176)
-
(1996)
Proceedings of the National Academy of Sciences of the United States of America
, vol.93
, Issue.24
, pp. 13665-13670
-
-
Warshel, A.1
Papazyan, A.2
-
35
-
-
21044432995
-
Visualizing reaction pathways in photoactive yellow protein from nanoseconds to seconds
-
DOI 10.1073/pnas.0409035102
-
Ihee, H., Rajagopal, S., Srajer, V., Pahl, R., Anderson, S., Schmidt, M., Schotte, F., Anfinrud, P. A., Wulff, M., and Moffat, K. (2005) Visualizing reaction pathways in photoactive yellow protein from nanoseconds to seconds Proc. Natl. Acad. Sci. U.S.A. 102, 7145-7150 (Pubitemid 40696348)
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.20
, pp. 7145-7150
-
-
Ihee, H.1
Rajagopal, S.2
Srajer, V.3
Pahl, R.4
Anderson, S.5
Schmidt, M.6
Schotte, F.7
Anfinrud, P.A.8
Wulff, M.9
Moffat, K.10
-
36
-
-
33750076973
-
Ultrafast infrared spectroscopy reveals a key step for successful entry into the photocycle for photoactive yellow protein
-
DOI 10.1073/pnas.0603476103
-
van Wilderen, L. J., van der Horst, M. A., van Stokkum, I. H., Hellingwerf, K. J., van Grondelle, R., and Groot, M. L. (2006) Ultrafast infrared spectroscopy reveals a key step for successful entry into the photocycle for photoactive yellow protein Proc. Natl. Acad. Sci. U.S.A. 103, 15050-15055 (Pubitemid 44583162)
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, Issue.41
, pp. 15050-15055
-
-
Van Wilderen, L.J.G.W.1
Van Der Horst, M.A.2
Van Stokkum, I.H.M.3
Hellingwerf, K.J.4
Van Grondelle, R.5
Groot, M.L.6
-
37
-
-
0030632978
-
"Strong" hydrogen bonds in chemistry and biology
-
Perrin, C. L. and Nielson, J. B. (1997) "Strong" hydrogen bonds in chemistry and biology Annu. Rev. Phys. Chem. 48, 511-544 (Pubitemid 127443917)
-
(1997)
Annual Review of Physical Chemistry
, vol.48
, Issue.1
, pp. 511-544
-
-
Perrin, C.L.1
Nielson, J.B.2
-
38
-
-
85028099698
-
Crystal structure of oxygen-evolving photosystem II at 1.9 Å resolution
-
Umena, Y., Kawakami, K., Shen, J.-R., and Kamiya, N. (2011) Crystal structure of oxygen-evolving photosystem II at 1.9 Å resolution Nature 473, 55-60
-
(2011)
Nature
, vol.473
, pp. 55-60
-
-
Umena, Y.1
Kawakami, K.2
Shen, J.-R.3
Kamiya, N.4
|