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Volumn 4, Issue 1, 2012, Pages 42-49

Domain-level identification and quantification of relative prokaryotic cell abundance in microbial communities by Micro-FTIR spectroscopy

Author keywords

[No Author keywords available]

Indexed keywords

ARCHAEA; BACTERIA (MICROORGANISMS); PROKARYOTA;

EID: 84856747241     PISSN: None     EISSN: 17582229     Source Type: Journal    
DOI: 10.1111/j.1758-2229.2011.00277.x     Document Type: Article
Times cited : (21)

References (27)
  • 3
    • 48749117805 scopus 로고    scopus 로고
    • Metagenomic signatures of the Peru Margin subseafloor biosphere show a genetically distinct environment
    • Biddle, J.F., Fitz-Gibbon, S., Schuster, S.C., Brenchley, J.E., and House, C.H. (2008) Metagenomic signatures of the Peru Margin subseafloor biosphere show a genetically distinct environment. Proc Natl Acad Sci USA 105: 10583-10588.
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 10583-10588
    • Biddle, J.F.1    Fitz-Gibbon, S.2    Schuster, S.C.3    Brenchley, J.E.4    House, C.H.5
  • 4
    • 34249745725 scopus 로고    scopus 로고
    • Review of mid-infrared Fourier transform-infrared spectroscopy applications for bacterial detection
    • Burgula, Y., Khali, D., Kim, S., Krishnan, S.S., Cousin, M.A., Gore, J.P., etal. (2007) Review of mid-infrared Fourier transform-infrared spectroscopy applications for bacterial detection. J Rapid Methods Autom Microbiol 15: 146-175.
    • (2007) J Rapid Methods Autom Microbiol , vol.15 , pp. 146-175
    • Burgula, Y.1    Khali, D.2    Kim, S.3    Krishnan, S.S.4    Cousin, M.A.5    Gore, J.P.6
  • 5
    • 19944399720 scopus 로고    scopus 로고
    • Distributions of microbial activities in deep subseafloor sediments
    • D'Hondt, S., Jørgensen, B.B., Miller, D.J., Batzke, A., Blake, R., Cragg, B.A., etal. (2004) Distributions of microbial activities in deep subseafloor sediments. Science 306: 2216-2221.
    • (2004) Science , vol.306 , pp. 2216-2221
    • D'Hondt, S.1    Jørgensen, B.B.2    Miller, D.J.3    Batzke, A.4    Blake, R.5    Cragg, B.A.6
  • 6
    • 0025911275 scopus 로고
    • Rapid differentiation of archaebacteria from eubacteria by diffuse reflectance Fourier-transform IR spectroscopic analysis of lipid preparations
    • Hedrick, D.B., Nivens, D.E., Stafford, C., and White, D.C. (1991) Rapid differentiation of archaebacteria from eubacteria by diffuse reflectance Fourier-transform IR spectroscopic analysis of lipid preparations. J Microbiol Methods 13: 67-73.
    • (1991) J Microbiol Methods , vol.13 , pp. 67-73
    • Hedrick, D.B.1    Nivens, D.E.2    Stafford, C.3    White, D.C.4
  • 7
    • 0026042799 scopus 로고
    • Elaboration of a procedure for identification of bacteria using Fourier-Transform IR spectral libraries: a stepwise correlation approach
    • Helm, D., Labischinski, H., and Naumann, D. (1991a) Elaboration of a procedure for identification of bacteria using Fourier-Transform IR spectral libraries: a stepwise correlation approach. J Microbiol Methods 14: 127-142.
    • (1991) J Microbiol Methods , vol.14 , pp. 127-142
    • Helm, D.1    Labischinski, H.2    Naumann, D.3
  • 8
    • 0026028597 scopus 로고
    • Classification and identification of bacteria by Fourier-transform infrared spectroscopy
    • Helm, D., Labischinski, H., Schallenhn, G., and Naumann, D. (1991b) Classification and identification of bacteria by Fourier-transform infrared spectroscopy. J Gen Microbiol 137: 69-79.
    • (1991) J Gen Microbiol , vol.137 , pp. 69-79
    • Helm, D.1    Labischinski, H.2    Schallenhn, G.3    Naumann, D.4
  • 9
    • 18644375172 scopus 로고    scopus 로고
    • Bacterial community shift along a subsurface geothermal water stream in a Japanese gold mine
    • Hirayama, H., Takai, K., Inagaki, F., Yamato, Y., Suzuki, M., Nealson, K.H., etal. (2005) Bacterial community shift along a subsurface geothermal water stream in a Japanese gold mine. Extremophiles 9: 169-184.
    • (2005) Extremophiles , vol.9 , pp. 169-184
    • Hirayama, H.1    Takai, K.2    Inagaki, F.3    Yamato, Y.4    Suzuki, M.5    Nealson, K.H.6
  • 10
    • 80355132408 scopus 로고    scopus 로고
    • Methylothermus subterraneus sp. nov., a moderately thermophilic methanotrophic bacterium from a terrestrial subsurface hot aquifer in Japan
    • in press): doi: 10.1099/ijs.0.028092-0.
    • Hirayama, H., Suzuki, Y., Abe, M., Miyazaki, M., Makita, H., Inagaki, F., etal. (2011) Methylothermus subterraneus sp. nov., a moderately thermophilic methanotrophic bacterium from a terrestrial subsurface hot aquifer in Japan. Int J Syst Evol Microbiol (in press): doi: 10.1099/ijs.0.028092-0.
    • (2011) Int J Syst Evol Microbiol
    • Hirayama, H.1    Suzuki, Y.2    Abe, M.3    Miyazaki, M.4    Makita, H.5    Inagaki, F.6
  • 11
    • 33750156528 scopus 로고    scopus 로고
    • In-situ infrared spectroscopy of ~850 million-year-old prokaryotic fossils
    • Igisu, M., Nakashima, S., Ueno, Y., Awramik, S.M., and Maruyama, S. (2006) In-situ infrared spectroscopy of ~850 million-year-old prokaryotic fossils. Appl Spectrosc 60: 1111-1120.
    • (2006) Appl Spectrosc , vol.60 , pp. 1111-1120
    • Igisu, M.1    Nakashima, S.2    Ueno, Y.3    Awramik, S.M.4    Maruyama, S.5
  • 13
    • 2342573065 scopus 로고    scopus 로고
    • Distribution and phylogenetic diversity of the subsurface microbial community in a Japanese epithermal gold mine
    • Inagaki, F., Takai, K., Hirayama, H., Yamato, Y., Nealson, K.H., and Horikoshi, K. (2003) Distribution and phylogenetic diversity of the subsurface microbial community in a Japanese epithermal gold mine. Extremophiles 7: 307-317.
    • (2003) Extremophiles , vol.7 , pp. 307-317
    • Inagaki, F.1    Takai, K.2    Hirayama, H.3    Yamato, Y.4    Nealson, K.H.5    Horikoshi, K.6
  • 14
    • 33644505436 scopus 로고    scopus 로고
    • Biogeographical distribution and diversity of microbes in methane hydrate-bearing deep marine sediments on the Pacific Ocean Margin
    • Inagaki, F., Nunoura, T., Nakagawa, S., Teske, A., Lever, M., Lauer, A., etal. (2006) Biogeographical distribution and diversity of microbes in methane hydrate-bearing deep marine sediments on the Pacific Ocean Margin. Proc Natl Acad Sci USA 103: 2815-2820.
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 2815-2820
    • Inagaki, F.1    Nunoura, T.2    Nakagawa, S.3    Teske, A.4    Lever, M.5    Lauer, A.6
  • 15
    • 0035945618 scopus 로고    scopus 로고
    • Archaeal dominance in the mesopelagic zone of the Pacific Ocean
    • Karner, M.B., DeLong, E.F., and Karl, D.M. (2001) Archaeal dominance in the mesopelagic zone of the Pacific Ocean. Nature 409: 507-510.
    • (2001) Nature , vol.409 , pp. 507-510
    • Karner, M.B.1    DeLong, E.F.2    Karl, D.M.3
  • 17
    • 50049107012 scopus 로고    scopus 로고
    • Significant contribution of Archaea to extant biomass in marine subsurface sediments
    • Lipp, J.S., Morono, Y., Inagaki, F., and Hinrichs, K.U. (2008) Significant contribution of Archaea to extant biomass in marine subsurface sediments. Nature 454: 991-994.
    • (2008) Nature , vol.454 , pp. 991-994
    • Lipp, J.S.1    Morono, Y.2    Inagaki, F.3    Hinrichs, K.U.4
  • 18
    • 0035829298 scopus 로고    scopus 로고
    • Discrimination, classification, identification of microorganisms using FTIR spectroscopy and chemometrics
    • Mariey, L., Signolle, J.P., Amiel, C., and Travert, J. (2001) Discrimination, classification, identification of microorganisms using FTIR spectroscopy and chemometrics. Vib Spectrosc 26: 151-159.
    • (2001) Vib Spectrosc , vol.26 , pp. 151-159
    • Mariey, L.1    Signolle, J.P.2    Amiel, C.3    Travert, J.4
  • 19
    • 0026413442 scopus 로고
    • Microbiological characterization by FT-IR spectroscopy
    • Naumann, D., Helm, D., and Labischinski, H. (1991a) Microbiological characterization by FT-IR spectroscopy. Nature 351: 81-82.
    • (1991) Nature , vol.351 , pp. 81-82
    • Naumann, D.1    Helm, D.2    Labischinski, H.3
  • 20
    • 0001784942 scopus 로고
    • The characterization of microorganisms by Fourier-transform infrared spectroscopy (FT-IR)
    • Nelson, W.H. (ed.). New York, NY, USA: VCH
    • Naumann, D., Helm, D., Labischinski, H., and Giesbrecht, P. (1991b) The characterization of microorganisms by Fourier-transform infrared spectroscopy (FT-IR). In Modern Techniques for Rapid Microbiological Analysis. Nelson, W.H. (ed.). New York, NY, USA: VCH, pp. 43-96.
    • (1991) Modern Techniques for Rapid Microbiological Analysis , pp. 43-96
    • Naumann, D.1    Helm, D.2    Labischinski, H.3    Giesbrecht, P.4
  • 21
    • 28644447444 scopus 로고    scopus 로고
    • Genetic and functional properties of uncultivated thermophilic crenarchaeotes from a subsurface gold mine as revealed by analysis of genome fragments
    • Nunoura, T., Hirayama, H., Takami, H., Oida, H., Nishi, S., Shimamura, S., etal. (2005) Genetic and functional properties of uncultivated thermophilic crenarchaeotes from a subsurface gold mine as revealed by analysis of genome fragments. Environ Microbiol 7: 1967-1984.
    • (2005) Environ Microbiol , vol.7 , pp. 1967-1984
    • Nunoura, T.1    Hirayama, H.2    Takami, H.3    Oida, H.4    Nishi, S.5    Shimamura, S.6
  • 22
    • 79955598535 scopus 로고    scopus 로고
    • Insights into the evolution of Archaea and eukaryotic protein modifier systems revealed by the genome of a novel archaeal group
    • doi: 10.1093/nar/gkq1228.
    • Nunoura, T., Takai, Y., Kakuta, J., Nishi, S., Sugawara, J., Kazama, H., etal. (2011) Insights into the evolution of Archaea and eukaryotic protein modifier systems revealed by the genome of a novel archaeal group. Nucleic Acid Res 39: 3204-3223. doi: 10.1093/nar/gkq1228.
    • (2011) Nucleic Acid Res , vol.39 , pp. 3204-3223
    • Nunoura, T.1    Takai, Y.2    Kakuta, J.3    Nishi, S.4    Sugawara, J.5    Kazama, H.6
  • 24
    • 50049119536 scopus 로고    scopus 로고
    • Biogeocheistry: who lives in the sea floor?
    • Pearson, A. (2008) Biogeocheistry: who lives in the sea floor? Nature 454: 952-953.
    • (2008) Nature , vol.454 , pp. 952-953
    • Pearson, A.1
  • 26
    • 0036274696 scopus 로고    scopus 로고
    • Isolation and metabolic characteristics of previously uncultured members of the order Aquificales in a subsurface gold mine
    • Takai, K., Hirayama, H., Sakihama, Y., Inagaki, F., Yamato, Y., and Horikoshi, K. (2002) Isolation and metabolic characteristics of previously uncultured members of the order Aquificales in a subsurface gold mine. Appl Environ Microbiol 68: 3046-3054.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 3046-3054
    • Takai, K.1    Hirayama, H.2    Sakihama, Y.3    Inagaki, F.4    Yamato, Y.5    Horikoshi, K.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.