Relationships between soil organic matter, nutrients, bacterial community structure, and the performance of microbial fuel cells

Environmental Science and Technology

Volumn 46, Issue 3, 2012, Pages 1914-1922

  Dunaj, Sara J ^a   Vallino, Joseph J ^b   Hines, Mark E ^a   Gay, Marcus ^c   Kobyljanec, Christine ^b   Rooney Varga, Juliette N ^a  

^a University of Massachusetts Lowell   (United States)

^b MARINE BIOLOGICAL LABORATORY   (United States)

^c GAIA Consulting Services   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AGRICULTURAL SOILS; BACTERIAL COMMUNITY; BACTERIAL COMMUNITY STRUCTURE; C:N RATIO; FOREST SOILS; GEOBACTER; HIGH-POWER; LIMITING FACTORS; LOW POWER; MICROHABITATS; ORGANIC CARBON SUBSTRATES; POLYPHENOL CONTENT; POWER OUT PUT; PROFILE DATA; RENEWABLE RESOURCE; RESPIRATION RATE; SOIL CHARACTERISTICS; SOIL ORGANIC CARBON; SOIL ORGANIC MATTERS; SOIL TYPES;

BIOGEOCHEMISTRY; BIOLOGICAL MATERIALS; FORESTRY; GAS EMISSIONS; GREENHOUSE GASES; MICROBIAL FUEL CELLS; ORGANIC COMPOUNDS; POWER QUALITY; SOCIAL SCIENCES; SOILS; VOLATILE FATTY ACIDS;

SOIL POLLUTION;

ACETIC ACID; ORGANIC CARBON; POLYPHENOL; SOIL ORGANIC MATTER;

AGRICULTURAL SOIL; BACTERIUM; BIOREMEDIATION; COMMUNITY STRUCTURE; ELECTRICITY GENERATION; FOREST SOIL; FUEL CELL; GREENHOUSE GAS; LIMITING FACTOR; MICROBIAL ACTIVITY; MICROBIAL COMMUNITY; PERFORMANCE ASSESSMENT; SOIL NUTRIENT; SOIL ORGANIC MATTER; SOIL TYPE;

AGRICULTURAL SOIL; ARTICLE; CLOSTRIDIA; COMMUNITY STRUCTURE; CONCENTRATION (PARAMETERS); CONTROLLED STUDY; DELTAPROTEOBACTERIA; FOREST SOIL; GEOBACTER; MICROBIAL COMMUNITY; MICROBIAL FUEL CELL; MICROHABITAT; NONHUMAN; NUTRIENT; SOIL;

ACETATES; AGRICULTURE; BACTERIA; BASE SEQUENCE; BIOELECTRIC ENERGY SOURCES; CARBON; DNA PRIMERS; ELECTROPHORESIS, AGAR GEL; HUMIC SUBSTANCES; MASSACHUSETTS; MOLECULAR SEQUENCE DATA; NITROGEN; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; POLYPHENOLS; SEQUENCE ANALYSIS, DNA; SOIL; SOIL MICROBIOLOGY; SPECIES SPECIFICITY; TREES;

BIOCHEMISTRY; EMISSION; FATTY ACIDS; FUEL CELLS; GEOCHEMISTRY; GREENHOUSE GASES; ORGANIC COMPOUNDS; POLLUTION; SOIL;

BACTERIA (MICROORGANISMS); CLOSTRIDIA; DELTAPROTEOBACTERIA; GEOBACTER;

EID: 84856745416     PISSN: 0013936X     EISSN: 15205851     Source Type: Journal    
DOI: 10.1021/es2032532     Document Type: Article

References (45)

1. Rinaldi, A.; Mecheri, B.; Garavaglia, V.; Licoccia, S.; Di Nardoc, P.; Traversa, E. Engineering materials and biology to boost performance of microbial fuel cells: A critical review Energy Environ. Sci. 2008, 1, 417-429
2. Logan, B.; Regan, J. M. Microbial Challenges and Harnessing the metabolic activity of bacteria can provide energy for a variety of applications, once technical and cost obstacles are overcome Environ. Sci. Technol. 2006, 5172-5180
3. Lovley, D. R. Bug juice: harvesting electricity with microorganisms Nature Rev. Microbiol. 2006, 4, 497-508 (Pubitemid 43905609)
4. De Schamphelaire, L.; Rabaey, K.; Boon, N.; Boon, N.; Verstraete, W. Outlook for benefits of sediment microbial fuel cells with two bio-electrodes Microbial Biotechnol. 2008, 1, 446-462
5. Kim, B. H.; Chang, I. S.; Gadd, G. M. Challenges in microbial fuel cell development and operation Appl. Microbiol. Biotechnol. 2007, 76, 485-494 (Pubitemid 47283106)
6. Franks, A. E.; Nevin, K. P.; Jia, H.; Izallalen, M.; Trevor L. Woodard, T. L.; Lovley, D. R. Novel strategy for three-dimensional real-time imaging of microbial fuel cell communities: Monitoring the inhibitory effects of proton accumulation within the anode biofilm Energy Environ. Sci. 2009, 2, 113-119
7. Lefebvre, O.; Ha Nguyen, T. T.; Al-Mamun, A.; Chang, I. S.; Ng, H. Y. T-RFLP reveals high b-Proteobacteria diversity in microbial fuel cells enriched with domestic wastewater J. Appl. Microbiol. 2010, 109, 839-850
8. De Schamphelaire, L.; Cabezas, A.; Marzorati, M.; Friedrich, M.; Boon, N.; Verstraete, W. Microbial community analysis of anodes from sediment microbial fuel cells powered by rhizodeposits of living rice plants Appl. Environ. Microbiol. 2010, 76, 2002-2008
9. Melillo, J. M.; Butler, S.; Johnson, J.; Mohan, J.; Steudler, P.; Lux, H.; Burrows, E.; Bowles, F.; Smith, R.; Scott, L.; Vario, C.; Hill, T.; Burton, A.; Zhou, Y.-M.; Tang, J. Soil warming, carbon, nitrogen interactions, and forest carbon budgets Proc. Nat. Acad. Sci. 2010, 108 (23) 9508-9512
10. Allen, S. E.; Grimshaw, H. M.; Parkinson, J. A.; Quarmby, C. In Chemical Analysis of Ecological Materials; Blackwell Scientific Publications: Hoboken, NJ, 1974.
11. Murphy, J.; Riley, J. P. A modified single solution method for the determination of phosphate in natural waters Anal. Chim. Acta 1962, 27, 31-36
12. Solorzano, L. Determination of ammonia in natural waters by the phenolhypochlorite method Limnol. Oceanogr. 1969, 14, 799-800
13. Wood, E. D.; Armstrong, F. A. G.; Richards, F. A. Determination of nitrate in sea water by cadmium-copper reduction to nitrite J. Mar. Biol. Assoc. United Kingdom 1967, 47, 23-31
14. Hines, M. E.; Duddleston, K. N.; Rooney-Varga, J.; Fields, D.; Chanton, J. P. Uncoupling of acetate degradation from methane formation in Alaskan wetlands: Connections to vegetation distribution Global Biogeochem. Cycles 2008, 22 (2) BG2017.1-BG2017.12
15. Steinberger, R. E.; Holden, P. A. Macromolecular composition of unsaturated Pseudomonas Aeruginosa biofilms with time and carbon source Biofilms 2004, 1, 37-47
16. Swan, B.; Ehrhardt, C.; Reifel, K.; Moreno, L.; Valentine, D. Archaeal and bacterial communities respond differently to environmental gradients in anoxic sediments of a California hypersaline lake, the Salton Sea Appl. Environ. Microbiol. 2010, 76, 757-768
17. Short Protocols in Molecular Biology; Ausuhel, F.; Kingston, R. E.; Moore, D. D.; Seidman, J. G.; Smith, J. A.; Struhl, K., Eds.; Wiley: Hoboken, NJ, 1997.
18. Schütte, U. M. E.; Abdo, Z.; Bent, S. J.; Shyu, C.; Williams, C. J.; Pierson, J. D.; Forney, L. J. Advances in the use of terminal restriction fragment length polymorphism (T-RFLP) analysis of 16S rRNA genes to characterize microbial communities Appl. Microbiol. Biotechnol. 2008, 80, 365-380
19. Lane, D. J. 16S/23S rRNA sequencing. In Nucleic Acid Techniques in Bacterial Systematics; Stackebrandt, E.; Goodfellow, M., Eds.; Wiley: New York, 1991; pp 115-147.
20. Polz, M. F.; Cavanaugh, C. M. Bias in template-to-product ratios in multitemplate PCR Appl. Environ. Microbiol. 1998, 64, 3724-3730 (Pubitemid 28462964)
21. Danovaro, R.; Luna, G. M.; Dell'Anno, A.; Pietrangeli, B. Comparison of two fingerprinting techniques, terminal restriction fragment length polymorphism and automated ribosomal intergenic spacer analysis, for determination of bacterial diversity in aquatic environments Appl. Environ. Microbiol. 2006, 72, 5982-5989 (Pubitemid 44414626)
22. White, H. K.; Reimers, C. E.; Cordes, E. E.; Dilly, G. F.; Girguis, P. R. Quantitative population dynamics of microbial communities in plankton-fed microbial fuel cells ISME J. 2009, 3, 635-646
23. Kim, G. T.; Webster, G.; Wimpenny, J. W. T.; Kim, B. H.; Kim, H. J.; Weightman, A. J. Bacterial community structure, compartmentalization and activity in a microbial fuel cell J. Appl. Microbiol. 2006, 101 (3) 698-710 (Pubitemid 44222300)
24. Hodges, T. W.; Olson, J. B. Molecular comparison of bacterial communities within iron-containing flocculent mats associated with submarine volcanoes along the Kermadec Arc Appl. Environ. Microbiol. 2009, 75, 1650-1657
25. Saikaly, P. E.; Stroot, P. G.; Oerther, D. B. Use of 16S rRNA gene terminal restriction fragment analysis to assess the impact of solids retention time on the bacterial diversity of activated sludge Appl. Environ. Microbiol. 2005, 71, 5814-5822 (Pubitemid 41456872)
26. Ramette, A. Quantitative community fingerprinting methods for estimating the abundance of operational taxonomic units in natural microbial communities Appl. Environ. Microbiol. 2009, 75, 2495-2505
27. Bissett, A.; Richardson, A. E.; Baker, G.; Wakelin, S.; Thrall, P. H. Life history determines biogeographical patterns of soil bacterial communities over multiple spatial scales Mol. Ecol. 2010, 19, 4315-4327
28. Schauer, R.; Bienhold, C.; Ramette, A.; Harder, J. Bacterial diversity and biogeography in deep-sea surface sediments of the south atlantic ocean ISME J. 2010, 4, 159-170
29. Ludwig, W.; Strunk, O.; Westram, R.; Richter, L.; Meier, H.; Yadhukumar ARB: A software environment for sequence data Nucl. Acid Res. 2004, 32, 1363-1371 (Pubitemid 38854737)
30. Cole, J. R.; Wang, Q.; Cardenas, E.; Fish, J.; Chai, B.; Farris, R. J.; Kulam-Syed-Mohideen, A. S.; McGarrell, D. M.; Marsh, T.; Garrity, G. M.; Tiedje, J. M. The Ribosomal Database Project: Improved alignments and new tools for rRNA analysis Nucl. Acid Res. 2009, 37, D141-D145
31. Huber, T.; Faulkner, G.; Hugenholtz, P. Bellerophon: a program to detect chimeric sequences in multiple sequence alignments Bioinformatics 2004, 20, 2317-2319 (Pubitemid 39341624)
32. Ashelford, K. E.; Chuzhanova, N. A.; Fry, J. C.; Jones, A. J.; Weightman, A. J. New screening software shows that most recent large 16S rRNA gene clone libraries contain chimeras Appl. Environ. Microbiol. 2006, 72, 5734-5741 (Pubitemid 44414595)
33. Stamatakis, A. RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models Bioinformatics 2006, 22, 2688-2690 (Pubitemid 44642609)
34. Stamatakis, A.; Hoover, P.; Rougemont, J. A Rapid bootstrap algorithm for the RAxML web-servers Syst. Biol. 2008, 57, 758-771
35. Huson, H. D.; Richter, D. C.; Rausch, C.; Dezulian, T.; Franz, M.; Rupp, R. Dendroscope: An interactive viewer for large phylogenetic trees BMC Bioinformatics 2007, 8, 460
36. De Schamphelaire, L.; Van den Bossche, L.; Dang, H. S.; Höfte, M.; Boon, N.; Rabaey, K.; Verstraet, W. Microbial fuel cells generating electricity from rhizodeposits of rice plants Environ. Sci. Technol. 2008, 42, 3053-3058 (Pubitemid 351536953)
37. Jung, S.; Regan, J. R. Comparison of anode bacterial communities and performance in microbial fuel cells with different electron donors Appl. Microbiol. Biotechnol. 2007, 77, 393-402 (Pubitemid 350029443)
38. Esteve-Nunez, A.; Sosnik, J.; Visconti, P.; Lovley, D. R. Fluorescent properties of C -type cytochromes reveal their potential role as an extracytoplasmic electron sink in Geobacter Sulfurreducens Environ. Microbiol. 2008, 10, 497-505
39. Northup, R. R.; Dahlgren, R. A.; McColl, J. G. Polyphenols as regulators of plant-litter-soil interactions in northern California's pygmy forest: A positive feedback? Biogeochem. 1998, 42, 189-220 (Pubitemid 28395173)
40. Kanerva, S.; Kitunen, V.; Loponen, J.; Smolander, A. Phenolic compounds and terpenes in soil organic horizon layers under silver birch, Norway spruce and Scots pine Biol. Fertil. Soils 2008, 44, 547-556 (Pubitemid 351640499)
41. Kusel, K.; Drake, H. L. Acetate synthesis in soil from a Bavarian beech forest Appl. Environ. Microbiol. 1994, 60, 1370-1373 (Pubitemid 24113962)
42. Rismani-Yazdi, H.; Christy, A. D.; Dehority, B. A.; Morrison, M.; Yu, Z.; Tuovinen, O. H. Electricity generation from cellulose by rumen microorganisms in microbial fuel cells Biotechnol. Bioeng. 2007, 97, 1398-1407 (Pubitemid 47204018)
43. 13C-labeled soil DNA Appl. Environ. Microbiol. 2003, 69, 1614-1622 (Pubitemid 36314302)
44. Park, H. S.; Kim, B. H.; Kim, H. S.; Kim, H. J.; Kim, G. T.; Kim, M.; Chang, I. S.; Park, Y. K.; Chang, H. I. A novel electrochemically active and Fe(III)-reducing bacterium phylogenetically related to Clostridium butyricum isolated from a microbial fuel cell Anaerobe 2001, 7, 297-306 (Pubitemid 34155242)
45. Wang, X. J.; Yang, J.; Xue-Ping Chen, X. P.; Sun, G. X.; Zhu, Y. G. Phylogenetic diversity of dissimilatory ferric iron reducers in paddy soil of Hunan, South China J. Soils Sediments 2009, 9, 568-577