-
1
-
-
0004161470
-
-
2nd ed. Oxford University Press New York
-
J.R. Sellers Myosins 2nd ed. 1999 Oxford University Press New York
-
(1999)
Myosins
-
-
Sellers, J.R.1
-
2
-
-
77952934976
-
Structural and functional insights into the myosin motor mechanism
-
H.L. Sweeney, and A. Houdusse Structural and functional insights into the myosin motor mechanism Annu. Rev. Biophys. 39 2010 539 557
-
(2010)
Annu. Rev. Biophys.
, vol.39
, pp. 539-557
-
-
Sweeney, H.L.1
Houdusse, A.2
-
3
-
-
65949123543
-
Brownian search-and-catch mechanism for myosin-VI steps
-
M. Iwaki, and A.H. Iwane T. Yanagida Brownian search-and-catch mechanism for myosin-VI steps Nat. Chem. Biol. 5 2009 403 405
-
(2009)
Nat. Chem. Biol.
, vol.5
, pp. 403-405
-
-
Iwaki, M.1
Iwane, A.H.2
Yanagida, T.3
-
5
-
-
45549095652
-
Load-dependent ADP binding to myosins V and VI: Implications for subunit coordination and function
-
DOI 10.1073/pnas.0800564105
-
Y. Oguchi, and S.V. Mikhailenko S. Ishiwata Load-dependent ADP binding to myosins V and VI: implications for subunit coordination and function Proc. Natl. Acad. Sci. USA 105 2008 7714 7719 (Pubitemid 351872704)
-
(2008)
Proceedings of the National Academy of Sciences of the United States of America
, vol.105
, Issue.22
, pp. 7714-7719
-
-
Oguchi, Y.1
Mikhailenko, S.V.2
Ohki, T.3
Olivares, A.O.4
De La Cruz, E.M.5
Ishiwata, S.6
-
6
-
-
73649085109
-
Mechanical coupling in myosin V: A simulation study
-
V. Ovchinnikov, B.L. Trout, and M. Karplus Mechanical coupling in myosin V: a simulation study J. Mol. Biol. 395 2010 815 833
-
(2010)
J. Mol. Biol.
, vol.395
, pp. 815-833
-
-
Ovchinnikov, V.1
Trout, B.L.2
Karplus, M.3
-
7
-
-
77951624827
-
i release from myosin: A simulation analysis of possible pathways
-
i release from myosin: a simulation analysis of possible pathways Structure 18 2010 458 470
-
(2010)
Structure
, vol.18
, pp. 458-470
-
-
Cecchini, M.1
Alexeev, Y.2
Karplus, M.3
-
8
-
-
77957937199
-
Atomic-level characterization of the structural dynamics of proteins
-
D.E. Shaw, and P. Maragakis W. Wriggers Atomic-level characterization of the structural dynamics of proteins Science 330 2010 341 346
-
(2010)
Science
, vol.330
, pp. 341-346
-
-
Shaw, D.E.1
Maragakis, P.2
Wriggers, W.3
-
12
-
-
0000197372
-
Large amplitude elastic motions in proteins from a single-parameter, atomic analysis
-
M.M. Tirion Large amplitude elastic motions in proteins from a single-parameter, atomic analysis Phys. Rev. Lett. 77 1996 1905 1908 (Pubitemid 126625816)
-
(1996)
Physical Review Letters
, vol.77
, Issue.9
, pp. 1905-1908
-
-
Tirion, M.M.1
-
13
-
-
0032533790
-
Analysis of domain motions by approximate normal mode calculations
-
DOI 10.1002/(SICI)1097-0134(19981115)33:3<417::AID-PROT10>3.0.CO;2- 8
-
K. Hinsen Analysis of domain motions by approximate normal mode calculations Proteins 33 1998 417 429 (Pubitemid 28516346)
-
(1998)
Proteins: Structure, Function and Genetics
, vol.33
, Issue.3
, pp. 417-429
-
-
Hinsen, K.1
-
14
-
-
0030623823
-
Direct evaluation of thermal fluctuations in proteins using a single-parameter harmonic potential
-
I. Bahar, A.R. Atilgan, and B. Erman Direct evaluation of thermal fluctuations in proteins using a single-parameter harmonic potential Fold. Des. 2 1997 173 181 (Pubitemid 127740467)
-
(1997)
Folding and Design
, vol.2
, Issue.3
, pp. 173-181
-
-
Bahar, I.1
Atilgan, A.R.2
Erman, B.3
-
16
-
-
0034663710
-
Dynamics of proteins predicted by molecular simulations and analytical approaches: Application to α-amylase inhibitor
-
DOI 10.1002/1097-0134(20000815)40:3<512::AID-PROT180>3.0.CO;2-M
-
P. Doruker, A.R. Atilgan, and I. Bahar Dynamics of proteins predicted by molecular dynamics simulations and analytical approaches: application to α-amylase inhibitor Proteins 40 2000 512 524 (Pubitemid 30624460)
-
(2000)
Proteins: Structure, Function and Genetics
, vol.40
, Issue.3
, pp. 512-524
-
-
Doruker, P.1
Atilgan, A.R.2
Bahar, I.3
-
17
-
-
0035132230
-
Anisotropy of fluctuation dynamics of proteins with an elastic network model
-
A.R. Atilgan, and S.R. Durell I. Bahar Anisotropy of fluctuation dynamics of proteins with an elastic network model Biophys. J. 80 2001 505 515
-
(2001)
Biophys. J.
, vol.80
, pp. 505-515
-
-
Atilgan, A.R.1
Durell, S.R.2
Bahar, I.3
-
18
-
-
0035044995
-
Conformational change of proteins arising from normal mode calculations
-
F. Tama, and Y.-H. Sanejouand Conformational change of proteins arising from normal mode calculations Protein Eng. 14 2001 1 6 (Pubitemid 32318932)
-
(2001)
Protein Engineering
, vol.14
, Issue.1
, pp. 1-6
-
-
Tama, F.1
Sanejouand, Y.-H.2
-
19
-
-
4143116596
-
How does protein architecture facilitate the transduction of ATP chemical-bond energy into mechanical work? The cases of nitrogenase and ATP binding-cassette proteins
-
DOI 10.1529/biophysj.103.038653
-
J.-L. Liao, and D.N. Beratan How does protein architecture facilitate the transduction of ATP chemical-bond energy into mechanical work? The cases of nitrogenase and ATP binding-cassette proteins Biophys. J. 87 2004 1369 1377 (Pubitemid 39095113)
-
(2004)
Biophysical Journal
, vol.87
, Issue.2
, pp. 1369-1377
-
-
Liao, J.-L.1
Beratan, D.N.2
-
20
-
-
25844440811
-
Elastic network models for understanding biomolecular machinery: From enzymes to supramolecular assemblies
-
C. Chennubhotla, and A.J. Rader I. Bahar Elastic network models for understanding biomolecular machinery: from enzymes to supramolecular assemblies Phys. Biol. 2 2005 S173 S180
-
(2005)
Phys. Biol.
, vol.2
-
-
Chennubhotla, C.1
Rader, A.J.2
Bahar, I.3
-
21
-
-
34547666968
-
How well can we understand large-scale protein motions using normal modes of elastic network models?
-
DOI 10.1529/biophysj.106.095927
-
L. Yang, G. Song, and R.L. Jernigan How well can we understand large-scale protein motions using normal modes of elastic network models? Biophys. J. 93 2007 920 929 (Pubitemid 47219784)
-
(2007)
Biophysical Journal
, vol.93
, Issue.3
, pp. 920-929
-
-
Yang, L.1
Song, G.2
Jernigan, R.L.3
-
22
-
-
18144366255
-
Slow energy relaxation of macromolecules and nanoclusters in solution
-
F. Piazza, P. De Los Rios, and Y.-H. Sanejouand Slow energy relaxation of macromolecules and nanoclusters in solution Phys. Rev. Lett. 94 2005 145502
-
(2005)
Phys. Rev. Lett.
, vol.94
, pp. 145502
-
-
Piazza, F.1
De Los Rios, P.2
Sanejouand, Y.-H.3
-
24
-
-
77955481319
-
Nonlinearity of mechanochemical motions in motor proteins
-
Y. Togashi, T. Yanagida, and A.S. Mikhailov Nonlinearity of mechanochemical motions in motor proteins PLOS Comput. Biol. 6 2010 e1000814
-
(2010)
PLOS Comput. Biol.
, vol.6
, pp. 1000814
-
-
Togashi, Y.1
Yanagida, T.2
Mikhailov, A.S.3
-
25
-
-
34547686106
-
Violation of the fluctuation-dissipation theorem in a protein system
-
DOI 10.1529/biophysj.106.100487
-
K. Hayashi, and M. Takano Violation of the fluctuation-dissipation theorem in a protein system Biophys. J. 93 2007 895 901 (Pubitemid 47219781)
-
(2007)
Biophysical Journal
, vol.93
, Issue.3
, pp. 895-901
-
-
Hayashi, K.1
Takano, M.2
-
26
-
-
78650486482
-
Tracing entire operation cycles of molecular motor hepatitis C virus helicase in structurally resolved dynamical simulations
-
H. Flechsig, and A.S. Mikhailov Tracing entire operation cycles of molecular motor hepatitis C virus helicase in structurally resolved dynamical simulations Proc. Natl. Acad. Sci. USA 107 2010 20875 20880
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 20875-20880
-
-
Flechsig, H.1
Mikhailov, A.S.2
-
27
-
-
0030904731
-
Protein dynamics determined by backbone conformation and atom packing
-
J. Higo, and H. Umeyama Protein dynamics determined by backbone conformation and atom packing Protein Eng. 10 1997 373 380 (Pubitemid 27252627)
-
(1997)
Protein Engineering
, vol.10
, Issue.4
, pp. 373-380
-
-
Higo, J.1
Umeyama, H.2
-
28
-
-
0242268469
-
Nonlinear elasticity, proteinquakes, and the energy landscapes of functional transitions in proteins
-
DOI 10.1073/pnas.2135471100
-
O. Miyashita, J.N. Onuchic, and P.G. Wolynes Nonlinear elasticity, proteinquakes, and the energy landscapes of functional transitions in proteins Proc. Natl. Acad. Sci. USA 100 2003 12570 12575 (Pubitemid 37339939)
-
(2003)
Proceedings of the National Academy of Sciences of the United States of America
, vol.100
, Issue.22
, pp. 12570-12575
-
-
Miyashita, O.1
Onuchic, J.N.2
Wolynes, P.G.3
-
29
-
-
0036775029
-
Elastic models of conformational transitions in macromolecules
-
DOI 10.1016/S1093-3263(02)00143-2, PII S1093326302001432
-
M.K. Kim, G.S. Chirikjian, and R.L. Jernigan Elastic models of conformational transitions in macromolecules J. Mol. Graph. Model. 21 2002 151 160 (Pubitemid 35245873)
-
(2002)
Journal of Molecular Graphics and Modelling
, vol.21
, Issue.2
, pp. 151-160
-
-
Kim, M.K.1
Chirikjian, G.S.2
Jernigan, R.L.3
-
30
-
-
24644483073
-
Large amplitude conformational change in proteins explored with a plastic network model: Adenylate kinase
-
DOI 10.1016/j.jmb.2005.07.031, PII S0022283605008193
-
P. Maragakis, and M. Karplus Large amplitude conformational change in proteins explored with a plastic network model: adenylate kinase J. Mol. Biol. 352 2005 807 822 (Pubitemid 41267070)
-
(2005)
Journal of Molecular Biology
, vol.352
, Issue.4
, pp. 807-822
-
-
Maragakis, P.1
Karplus, M.2
-
32
-
-
23244442698
-
Probing the local dynamics of nucleotide-binding pocket coupled to the global dynamics: Myosin versus kinesin
-
DOI 10.1529/biophysj.105.063305
-
W. Zheng, and B.R. Brooks Probing the local dynamics of nucleotide-binding pocket coupled to the global dynamics: myosin versus kinesin Biophys. J. 89 2005 167 178 (Pubitemid 41098273)
-
(2005)
Biophysical Journal
, vol.89
, Issue.1
, pp. 167-178
-
-
Zheng, W.1
Brooks, B.R.2
-
33
-
-
77952373083
-
Unidirectional Brownian motion observed in an in silico single molecule experiment of an actomyosin motor
-
M. Takano, T.P. Terada, and M. Sasai Unidirectional Brownian motion observed in an in silico single molecule experiment of an actomyosin motor Proc. Natl. Acad. Sci. USA 107 2010 7769 7774
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 7769-7774
-
-
Takano, M.1
Terada, T.P.2
Sasai, M.3
-
34
-
-
79958770374
-
Coarse-grained modeling of conformational transitions underlying the processive stepping of myosin v dimer along filamentous actin
-
W. Zheng Coarse-grained modeling of conformational transitions underlying the processive stepping of myosin V dimer along filamentous actin Proteins 79 2011 2291 2305
-
(2011)
Proteins
, vol.79
, pp. 2291-2305
-
-
Zheng, W.1
-
35
-
-
0141843643
-
Elechron cryo-microscopy shows how strong binding of myosin to actin releases nucleotide
-
DOI 10.1038/nature02005
-
K.C. Holmes, and I. Angert R.R. Schröder Electron cryo-microscopy shows how strong binding of myosin to actin releases nucleotide Nature 425 2003 423 427 (Pubitemid 37187274)
-
(2003)
Nature
, vol.425
, Issue.6956
, pp. 423-427
-
-
Holmes, K.C.1
Angert, I.2
Kull, F.J.3
Jahn, W.4
Schroder, R.R.5
-
37
-
-
0033596962
-
The sequence of the myosin 50-20K loop affects Myosin's affinity for actin throughout the actin-myosin ATPase cycle and its maximum ATPase activity
-
C.T. Murphy, and J.A. Spudich The sequence of the myosin 50-20K loop affects Myosin's affinity for actin throughout the actin-myosin ATPase cycle and its maximum ATPase activity Biochemistry 38 1999 3785 3792
-
(1999)
Biochemistry
, vol.38
, pp. 3785-3792
-
-
Murphy, C.T.1
Spudich, J.A.2
-
40
-
-
10644225267
-
Three myosin V structures delineate essential features of chemo-mechanical transduction
-
DOI 10.1038/sj.emboj.7600458
-
P.D. Coureux, H.L. Sweeney, and A. Houdusse Three myosin V structures delineate essential features of chemo-mechanical transduction EMBO J. 23 2004 4527 4537 (Pubitemid 39657853)
-
(2004)
EMBO Journal
, vol.23
, Issue.23
, pp. 4527-4537
-
-
Coureux, P.-D.1
Sweeney, H.L.2
Houdusse, A.3
-
42
-
-
50949099429
-
Allosteric communication in myosin V: From small conformational changes to large directed movements
-
M. Cecchini, A. Houdusse, and M. Karplus Allosteric communication in myosin V: from small conformational changes to large directed movements PLOS Comput. Biol. 4 2008 e1000129
-
(2008)
PLOS Comput. Biol.
, vol.4
, pp. 1000129
-
-
Cecchini, M.1
Houdusse, A.2
Karplus, M.3
-
43
-
-
77949889825
-
Multiscale modeling of structural dynamics underlying force generation and product release in actomyosin complex
-
W. Zheng Multiscale modeling of structural dynamics underlying force generation and product release in actomyosin complex Proteins 78 2010 638 660
-
(2010)
Proteins
, vol.78
, pp. 638-660
-
-
Zheng, W.1
-
44
-
-
0000998079
-
The effects of solvent on the conformation and the collective motions of protein: Normal mode analysis and molecular dynamics simulations of melittin in water and in vacuum
-
A. Kitao, F. Hirata, and N. G The effects of solvent on the conformation and the collective motions of protein: normal mode analysis and molecular dynamics simulations of melittin in water and in vacuum Chem. Phys. 158 1991 447 472
-
(1991)
Chem. Phys.
, vol.158
, pp. 447-472
-
-
Kitao, A.1
Hirata, F.2
N, G.3
-
45
-
-
58749091822
-
The nature of the globular-to fibrous-actin transition
-
T. Oda, and M. Iwasa A. Narita The nature of the globular-to fibrous-actin transition Nature 457 2009 441 445
-
(2009)
Nature
, vol.457
, pp. 441-445
-
-
Oda, T.1
Iwasa, M.2
Narita, A.3
-
46
-
-
0141732282
-
A structural state of the myosin V motor without bound nucleotide
-
DOI 10.1038/nature01927
-
P.D. Coureux, and A.L. Wells A. Houdusse A structural state of the myosin V motor without bound nucleotide Nature 425 2003 419 423 (Pubitemid 37187273)
-
(2003)
Nature
, vol.425
, Issue.6956
, pp. 419-423
-
-
Coureux, P.-D.1
Wells, A.L.2
Menetrey, J.3
Yengo, C.M.4
Morris, C.A.5
Sweeney, H.L.6
Houdusse, A.7
-
48
-
-
42549172306
-
The R403Q myosin mutation implicated in familial hypertrophic cardiomyopathy causes disorder at the actomyosin interface
-
N. Volkmann, and H. Lui D. Hanein The R403Q myosin mutation implicated in familial hypertrophic cardiomyopathy causes disorder at the actomyosin interface PLoS ONE 2 2007 e1123
-
(2007)
PLoS ONE
, vol.2
, pp. 1123
-
-
Volkmann, N.1
Lui, H.2
Hanein, D.3
-
49
-
-
26944449015
-
Load-dependent kinetics of myosin-V can explain its high processivity
-
DOI 10.1038/ncb1287, PII N1287
-
C. Veigel, and S. Schmitz J.R. Sellers Load-dependent kinetics of myosin-V can explain its high processivity Nat. Cell Biol. 7 2005 861 869 (Pubitemid 41486286)
-
(2005)
Nature Cell Biology
, vol.7
, Issue.9
, pp. 861-869
-
-
Veigel, C.1
Schmitz, S.2
Wang, F.3
Sellers, J.R.4
-
51
-
-
51349088578
-
Direct observation of the mechanochemical coupling in myosin Va during processive movement
-
T. Sakamoto, and M.R. Webb J.R. Sellers Direct observation of the mechanochemical coupling in myosin Va during processive movement Nature 455 2008 128 132
-
(2008)
Nature
, vol.455
, pp. 128-132
-
-
Sakamoto, T.1
Webb, M.R.2
Sellers, J.R.3
-
52
-
-
58849085113
-
Simultaneous measurement of nucleotide occupancy and mechanical displacement in myosin-V, a processive molecular motor
-
T. Komori, and S. Nishikawa T. Yanagida Simultaneous measurement of nucleotide occupancy and mechanical displacement in myosin-V, a processive molecular motor Biophys. J. 96 2009 L04 L06
-
(2009)
Biophys. J.
, vol.96
-
-
Komori, T.1
Nishikawa, S.2
Yanagida, T.3
-
53
-
-
0033527043
-
Myosin-V is a processive actin-based motor
-
DOI 10.1038/23072
-
A.D. Mehta, and R.S. Rock R.E. Cheney Myosin-V is a processive actin-based motor Nature 400 1999 590 593 (Pubitemid 29381811)
-
(1999)
Nature
, vol.400
, Issue.6744
, pp. 590-593
-
-
Mehta, A.D.1
Rock, R.S.2
Rief, M.3
Spudich, J.A.4
Mooseker, M.S.5
Cheney, R.E.6
-
54
-
-
0037832404
-
Myosin V walks hand-over-hand: Single fluorophore imaging with 1.5-nm localization
-
DOI 10.1126/science.1084398
-
A. Yildiz, and J.N. Forkey P.R. Selvin Myosin V walks hand-over-hand: single fluorophore imaging with 1.5-nm localization Science 300 2003 2061 2065 (Pubitemid 36760126)
-
(2003)
Science
, vol.300
, Issue.5628
, pp. 2061-2065
-
-
Yildiz, A.1
Forkey, J.N.2
McKinney, S.A.3
Ha, T.4
Goldman, Y.E.5
Selvin, P.R.6
-
55
-
-
79959673675
-
Chemomechanical coupling and motor cycles of myosin v
-
V. Bierbaum, and R. Lipowsky Chemomechanical coupling and motor cycles of myosin V Biophys. J. 100 2011 1747 1755
-
(2011)
Biophys. J.
, vol.100
, pp. 1747-1755
-
-
Bierbaum, V.1
Lipowsky, R.2
-
57
-
-
43649085777
-
Toward a molecular understanding of the anisotropic response of proteins to external forces: Insights from elastic network models
-
E. Eyal, and I. Bahar Toward a molecular understanding of the anisotropic response of proteins to external forces: insights from elastic network models Biophys. J. 94 2008 3424 3435
-
(2008)
Biophys. J.
, vol.94
, pp. 3424-3435
-
-
Eyal, E.1
Bahar, I.2
|