Expression pattern and putative function of EXL1 and homologous genes in arabidopsis

Plant Signaling and Behavior

Volumn 7, Issue 1, 2012, Pages 22-27

  Schröder, Florian ^a   Lisso, Janina ^a   Müssig, Carsten ^a  

^a UNIVERSITY OF POTSDAM   (Germany)

Author keywords

Anoxia; Brassinosteroids; Carbon availability; EXL1; EXL2; EXL4; Growth; Starvation

Indexed keywords

ARABIDOPSIS;

ARABIDOPSIS PROTEIN; EXL1 PROTEIN, ARABIDOPSIS; PRIMER DNA;

ARABIDOPSIS; ARTICLE; BIOMASS; GENETICS; MUTATION; NUCLEOTIDE SEQUENCE; PHYSIOLOGY; PLANT GENE; POLYMERASE CHAIN REACTION;

ARABIDOPSIS; ARABIDOPSIS PROTEINS; BASE SEQUENCE; BIOMASS; DNA PRIMERS; GENES, PLANT; MUTATION; POLYMERASE CHAIN REACTION;

EID: 84856700587     PISSN: 15592316     EISSN: 15592324     Source Type: Journal    
DOI: 10.4161/psb.7.1.18369     Document Type: Article

References (34)

1. Gout E, Bligny R, Douce R, Boisson A-M, Rivasseu C. Early response of plant cell to carbon deprivation: in vivo 31P-NMR spectroscopy shows a quasi-instantaneous disruption on cytosolic sugars, phosphorylated intermediates of energy metabolism, phosphate partitioning, and intracellular pHs. New Phytol 2011; 189:135-47; PMID:20819175; http://dx.doi.org/10.1111/j.1469-8137.2010.03449.x
2. Rolland F, Baena-Gonzalez E, Sheen J. Sugar sensing and signalling in plants: conserved and novel mechanisms. Annu Rev Plant Biol 2006; 57:675-709; PMID: 16669778; http://dx.doi.org/10.1146/annurev.arplant.57.032905.105441
3. Stitt M, Gibon Y, Lunn JE, Piques M. Multilevel genomics analysis of carbon signalling during low carbon availability: coordinating the supply and utilisation of carbon in a fluctuating environment. Funct Plant Biol 2007; 34:526-49; http://dx.doi.org/10.1071/FP06249
4. Gibon Y, Bläsing OE, Palacios-Rojas N, Pankovic D, Hendriks JHM, Fisahn J, et al. Adjustment of diurnal starch turnover to short days: depletion of sugar during the night leads to a temporary inhibition of carbohydrate utilization, accumulation of sugars and post-translational activation of ADP-glucose pyrophosphorylase in the following light period. Plant J 2004; 39:847-62; PMID:15341628; http://dx.doi.org/10.1111/j.1365-313X.2004.02173.x
5. Baena-González E, Sheen J. Convergent energy and stress signalling. Trends Plant Sci 2008; 13:474-82; PMID:18701338; http://dx.doi.org/10.1016/j.tplants.2008.06.006
6. Halford NG, Hey SJ. Snf1-related protein kinases (SnRK1) act within an intricate network that links metabolic and stress signalling in plants. Biochem J 2009; 419:247-59; PMID:19309312; http://dx.doi.org/10.1042/BJ20082408
7. Izumi M, Wada S, Makino A, Ishida H. The autophagic degradation of chloroplasts via Rubiscocontaining bodies is specifically linked to leaf carbon status but not nitrogen status in Arabidopsis. Plant Physiol 2010; 154:1196-209; PMID:20807997; http://dx.doi.org/10.1104/pp.110.158519
8. Hummel I, Pantin F, Sulpice R, Piques M, Rolland G, Dauzat M, et al. Arabidopsis plants acclimate to water deficit at low cost through changes of carbon usage: an integrated perspective using growth, metabolite, enzyme, and gene expression analysis. Plant Physiol 2010; 154:357-72; PMID:20631317; http://dx.doi.org/10.1104/pp.110.157008
9. Smith AM, Stitt M. Coordination of carbon supply and plant growth. Plant Cell Environ 2007; 30:1126-49; PMID:17661751; http://dx.doi.org/10.1111/j.1365-3040.2007.01708.x
10. Bailey-Serres J, Voesenek LACJ. Flooding stress: acclimations and genetic diversity. Annu Rev Plant Biol 2008; 59:313-39; PMID:18444902; http://dx.doi.org/10.1146/annurev.arplant.59.032607.092752
11. Smeekens S, Ma J, Hanson J, Rolland F. Sugar signals and molecular networks controlling plant growth. Curr Opin Plant Biol 2010; 13:274-9; PMID:20056477; http://dx.doi.org/10.1016/j.pbi.2009.12.002
12. Paul M. Trehalose 6-phosphate. Curr Opin Plant Biol 2007; 10:303-9; PMID:17434789; http://dx.doi.org/10.1016/j.pbi.2007.04.001
13. Bailey-Serres J, Voesenek LACJ. Life in the balance: a signaling network controlling survival of flooding. Curr Opin Plant Biol 2010; 13:489-94; PMID:20813578; http://dx.doi.org/10.1016/j.pbi.2010.08.002
14. Geigenberger P. Response of plant metabolism to too little oxygen. Curr Opin Plant Biol 2003; 6:247-56; PMID:12753974; http://dx.doi.org/10.1016/S1369-5266(03)00038-4
15. Vashisht D, Hesselink A, Pierik R, Ammerlaan JMH, Bailey-Serres J, Visser EJW, et al. Natural variation of submergence tolerance among Arabidopsis thaliana accessions. New Phytol 2011; 190:299-310; PMID: 21108648; http://dx.doi.org/10.1111/j.1469-8137.2010.03552.x
16. Bartels D, Sunkar R. Drought and salt tolerance in plants. Crit Rev Plant Sci 2005; 24:23-58; http://dx.doi.org/10.1080/07352680590910410
17. Seki M, Umezawa T, Urano K, Shinozaki K. Regulatory metabolic networks in drought stress responses. Curr Opin Plant Biol 2007; 10:296-302; PMID:17468040; http://dx.doi.org/10.1016/j.pbi.2007.04.014
18. Muller B, Pantin F, Génard M, Turc O, Freixes S, Piques M, et al. Water deficits uncouple growth from photosynthesis, increase C content, and modify the relationships between C and growth in sink organs. J Exp Bot 2011; 62:1715-29; PMID:21239376; http://dx.doi.org/10.1093/jxb/erq438
19. Lee SC, Mustroph A, Sasidharan R, Vashisht D, Pedersen O, Oosumi T, et al. Molecular characterization of the submergence response of the Arabidopsis thaliana ecotype Columbia. New Phytol 2011; 190: 457-71; PMID:21231933; http://dx.doi.org/10.1111/j.1469-8137.2010.03590.x
20. Bläsing OE, Gibon Y, Günther M, Höhne M, Morcuende R, Osuna D, et al. Sugars and circadian regulation make major contributions to the global regulation of diurnal gene expression in Arabidopsis. Plant Cell 2005; 17:3257-81; PMID:16299223; http://dx.doi.org/10.1105/tpc.105.035261
21. Gibon Y, Usadel B, Bläsing OE, Kamlage B, Höhne M, Trethewey R, et al. Integration of metabolite with transcript and enzyme activity profiling during diurnal cycles in Arabidopsis rosettes. Genome Biol 2006; 7: R76; PMID:16916443; http://dx.doi.org/10.1186/gb-2006-7-8-r76
22. Osuna D, Usadel B, Morcuende R, Gibon Y, Bläsing OE, Höhne M, et al. Temporal responses of transcripts, enzyme activities and metabolites after adding sucrose to carbon-deprived Arabidopsis seedlings. Plant J 2007; 49:463-91; PMID:17217462; http://dx.doi.org/10.1111/j.1365-313X.2006.02979.x
23. Usadel B, Bläsing OE, Gibon Y, Retzlaff K, Höhne M, Günther M, et al. Global transcript levels respond to small changes of the carbon status during progressive exhaustion of carbohydrates in Arabidopsis rosettes. Plant Physiol 2008; 146:1834-61; PMID:18305208; http://dx.doi.org/10.1104/pp.107.115592
24. Baena-González E, Rolland F, Thevelein JM, Sheen J. A central integrator of transcription networks in plant stress and energy signalling. Nature 2007; 448: 938-42; PMID:17671505; http://dx.doi.org/10.1038/nature06069
25. Schröder F, Lisso J, Müssig C. EXORDIUM-LIKE1 promotes growth during low carbon availability in Arabidopsis. Plant Physiol 2011; 156:1620-30; PMID: 21543728; http://dx.doi.org/10.1104/pp.111.177204
26. Mustroph A, Zanetti ME, Jang CJH, Holtan HE, Repetti PP, Galbraith DW, et al. Profiling translatomes of discrete cell populations resolves altered cellular priorities during hypoxia in Arabidopsis. Proc Natl Acad Sci USA 2009; 106:18843-8; PMID:19843695; http://dx.doi.org/10.1073/pnas.0906131106
27. Bolstad BM, Irizarry RA, Astrand M, Speed TP. A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 2003; 19:185-93; PMID:12538238; http://dx.doi.org/10.1093/bioinformatics/19.2.185
28. Schmid M, Davison TS, Henz SR, Pape UJ, Demar M, Vingron M, et al. A gene expression map of Arabidopsis thaliana development. Nat Genet 2005; 37:501-6; PMID:15806101; http://dx.doi.org/10.1038/ng1543
29. Jamet E, Canut H, Boudart G, Pont-Lezica RF. Cell wall proteins: a new insight through proteomics. Trends Plant Sci 2006; 11:33-9; PMID:16356755; http://dx.doi.org/10.1016/j.tplants.2005.11.006
30. Schröder F, Lisso J, Lange P, Müssig C. The extracellular EXO protein mediates cell expansion in Arabidopsis leaves. BMC Plant Biol 2009; 9:20; PMID:19216774; http://dx.doi.org/10.1186/1471-2229-9-20
31. Goetz M, Godt DE, Roitsch T. Tissue-specific induction of the mRNA for an extracellular invertase isoenzyme of tomato by brassinosteroids suggests a role for steroid hormones in assimilate partitioning. Plant J 2000; 22:515-22; PMID:10886771; http://dx.doi.org/10.1046/j.1365-313x.2000.00766.x
32. Lisso J, Altmann T, Müssig C. Metabolic changes in fruits of the tomato dx mutant. Phytochemistry 2006; 67:2232-8; PMID:16930643; http://dx.doi.org/10.1016/j.phytochem.2006.07.008
33. Schlüter U, Köpke D, Altmann T, Müssig C. Analysis of carbohydrate metabolism of CPD-antisense plants and the brassinosteroid-deficient cbb1 mutant. Plant Cell Environ 2002; 25:783-91; http://dx.doi.org/10.1046/j.1365-3040.2002.00860.x
34. Wu CY, Trieu A, Radhakrishnan P, Kwok SF, Harris S, Zhang K, et al. Brassinosteroids regulate grain filling in rice. Plant Cell 2008; 20:2130-45; PMID:18708477; http://dx.doi.org/10.1105/tpc.107.055087