메뉴 건너뛰기




Volumn 354, Issue 2, 2006, Pages 240-251

Quantitative analysis of a virulent bacteriophage transcription strategy

Author keywords

Bacteriophages; Gene expression; Genomic array data; Kinetic modeling; T7 like RNAP; Xp10 phage

Indexed keywords

RNA POLYMERASE;

EID: 33749530225     PISSN: 00426822     EISSN: 10960341     Source Type: Journal    
DOI: 10.1016/j.virol.2006.05.038     Document Type: Article
Times cited : (9)

References (22)
  • 1
    • 0029934521 scopus 로고
    • Deletion of rpoB reveals a second distinct transcription system in plastids of higher plants
    • Allison L.A., Simon L.D., and Maliga P. Deletion of rpoB reveals a second distinct transcription system in plastids of higher plants. EMBO J. 15 (1986) 2802-2809
    • (1986) EMBO J. , vol.15 , pp. 2802-2809
    • Allison, L.A.1    Simon, L.D.2    Maliga, P.3
  • 2
    • 0037162469 scopus 로고    scopus 로고
    • Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays
    • Bernstein J.A., Khodursky A.B., Lin P.H., Lin-Chao S., and Cohen S.N. Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays. Proc. Natl. Acad. Sci. 99 (2002) 9697-9702
    • (2002) Proc. Natl. Acad. Sci. , vol.99 , pp. 9697-9702
    • Bernstein, J.A.1    Khodursky, A.B.2    Lin, P.H.3    Lin-Chao, S.4    Cohen, S.N.5
  • 3
    • 0037059610 scopus 로고    scopus 로고
    • Phage genomics: small is beautiful
    • Brussow H., and Hendrix R.W. Phage genomics: small is beautiful. Cell 108 (2002) 13-16
    • (2002) Cell , vol.108 , pp. 13-16
    • Brussow, H.1    Hendrix, R.W.2
  • 4
    • 0242574990 scopus 로고    scopus 로고
    • A biophysical approach to transcription factor binding site discovery
    • Djordjevic M., Sengupta A.M., and Shraiman B.I. A biophysical approach to transcription factor binding site discovery. Genome Res. 13 (2003) 2381-2390
    • (2003) Genome Res. , vol.13 , pp. 2381-2390
    • Djordjevic, M.1    Sengupta, A.M.2    Shraiman, B.I.3
  • 6
    • 0037126028 scopus 로고    scopus 로고
    • Physical constraints and functional characteristics of transcription factor-DNA interaction
    • Gerland U., Moroz D.J., and Hwa T. Physical constraints and functional characteristics of transcription factor-DNA interaction. Proc. Natl. Acad. Sci. 99 (2002) 12015-12020
    • (2002) Proc. Natl. Acad. Sci. , vol.99 , pp. 12015-12020
    • Gerland, U.1    Moroz, D.J.2    Hwa, T.3
  • 7
    • 0031011722 scopus 로고    scopus 로고
    • The two RNA polymerases encoded by the nuclear and the plastid compartments transcribe distinct groups of genes in tobacco plastids
    • Hajdukiewicz T.J., Allison L.A., and Maliga P. The two RNA polymerases encoded by the nuclear and the plastid compartments transcribe distinct groups of genes in tobacco plastids. EMBO J. 16 (1997) 4041-4048
    • (1997) EMBO J. , vol.16 , pp. 4041-4048
    • Hajdukiewicz, T.J.1    Allison, L.A.2    Maliga, P.3
  • 9
    • 0025210163 scopus 로고
    • Transcription termination by bacteriophage T7 RNA polymerase at rho-independent terminators
    • Jeng S.T., Gardner J.F., and Gumport R.I. Transcription termination by bacteriophage T7 RNA polymerase at rho-independent terminators. J. Biol. Chem. 265 (1990) 3823-3830
    • (1990) J. Biol. Chem. , vol.265 , pp. 3823-3830
    • Jeng, S.T.1    Gardner, J.F.2    Gumport, R.I.3
  • 10
    • 0020341078 scopus 로고
    • Bacteriophage T4 late promoters: mapping 5′ ends of T4 gene 23 mRNAs
    • Kassavetis G.A., and Geiduschek E.P. Bacteriophage T4 late promoters: mapping 5′ ends of T4 gene 23 mRNAs. EMBO J. 1 (1982) 107-114
    • (1982) EMBO J. , vol.1 , pp. 107-114
    • Kassavetis, G.A.1    Geiduschek, E.P.2
  • 12
    • 0028309022 scopus 로고
    • Characterization of two types of termination signal for bacteriophage T7 RNA polymerase
    • Macdonald L.E., Durbin R.K., Dunn J.J., and McAllister W.T. Characterization of two types of termination signal for bacteriophage T7 RNA polymerase. J. Mol. Biol. 238 (1994) 145-158
    • (1994) J. Mol. Biol. , vol.238 , pp. 145-158
    • Macdonald, L.E.1    Durbin, R.K.2    Dunn, J.J.3    McAllister, W.T.4
  • 13
    • 0035172545 scopus 로고    scopus 로고
    • Bacteriophage T7 protein kinase phosphorylates RNase E and stabilizes mRNAs synthesized by T7 RNA polymerase
    • Marchand I., Nicholson A.W., and Dreyfus M. Bacteriophage T7 protein kinase phosphorylates RNase E and stabilizes mRNAs synthesized by T7 RNA polymerase. Mol. Microbiol. 42 (2001) 767-776
    • (2001) Mol. Microbiol. , vol.42 , pp. 767-776
    • Marchand, I.1    Nicholson, A.W.2    Dreyfus, M.3
  • 14
    • 21844441735 scopus 로고    scopus 로고
    • The T7 group
    • Calendar R. (Ed), Oxford Univ. Press
    • Molineux I. The T7 group. In: Calendar R. (Ed). Bacteriophages (2005), Oxford Univ. Press
    • (2005) Bacteriophages
    • Molineux, I.1
  • 15
    • 0036290932 scopus 로고    scopus 로고
    • A novel bacteriophage-encoded RNA polymerase binding protein inhibits transcription initiation and abolishes transcription termination by host RNA polymerase
    • Nechaev S., Yuzenkova Y., Niedziela-Majka A., Heyduk T., and Severinov K. A novel bacteriophage-encoded RNA polymerase binding protein inhibits transcription initiation and abolishes transcription termination by host RNA polymerase. J. Mol. Biol. 320 (2002) 11-22
    • (2002) J. Mol. Biol. , vol.320 , pp. 11-22
    • Nechaev, S.1    Yuzenkova, Y.2    Niedziela-Majka, A.3    Heyduk, T.4    Severinov, K.5
  • 17
    • 0027232759 scopus 로고
    • Nucleation and growth phases in the polymerization of coat and scaffolding subunits into icosahedral procapsid shells
    • Prevelige Jr. P.E., Thomas D., and King J. Nucleation and growth phases in the polymerization of coat and scaffolding subunits into icosahedral procapsid shells. Biophys. J. 64 (1993) 824-835
    • (1993) Biophys. J. , vol.64 , pp. 824-835
    • Prevelige Jr., P.E.1    Thomas, D.2    King, J.3
  • 18
    • 0036304755 scopus 로고    scopus 로고
    • Abstract kinetic studies and structural models of the association of E. coli sigma(70) RNA polymerase with the lambdaP(R) promoter: large scale conformational changes in forming the kinetically significant intermediates
    • Saecker R.M., Tsodikov O.V., McQuade K.L., Schlax P.E., Capp M.W., and Record Jr. M.T. Abstract kinetic studies and structural models of the association of E. coli sigma(70) RNA polymerase with the lambdaP(R) promoter: large scale conformational changes in forming the kinetically significant intermediates. J. Mol. Biol. 319 (2002) 649-671
    • (2002) J. Mol. Biol. , vol.319 , pp. 649-671
    • Saecker, R.M.1    Tsodikov, O.V.2    McQuade, K.L.3    Schlax, P.E.4    Capp, M.W.5    Record Jr., M.T.6
  • 19
    • 13444266330 scopus 로고    scopus 로고
    • The tale of two RNA polymerases: transcription profiling and gene expression strategy of bacteriophage Xp10
    • Semenova E., Djordjevic M., Shraiman B., and Severinov K. The tale of two RNA polymerases: transcription profiling and gene expression strategy of bacteriophage Xp10. Mol. Microbiol. 55 (2005) 764-777
    • (2005) Mol. Microbiol. , vol.55 , pp. 764-777
    • Semenova, E.1    Djordjevic, M.2    Shraiman, B.3    Severinov, K.4
  • 20
    • 5144235493 scopus 로고    scopus 로고
    • Phage-induced change in the stability of mRNAs
    • Ueno H., and Yonesaki T. Phage-induced change in the stability of mRNAs. Virology 10 (2004) 134-141
    • (2004) Virology , vol.10 , pp. 134-141
    • Ueno, H.1    Yonesaki, T.2
  • 22
    • 0019839124 scopus 로고
    • Transcriptional map of bacteriophage N4. Location and polarity of N4 RNAs
    • Zivin R., Zehring W., and Rothman-Denes L.B. Transcriptional map of bacteriophage N4. Location and polarity of N4 RNAs. J. Mol. Biol. 152 (1981) 335-356
    • (1981) J. Mol. Biol. , vol.152 , pp. 335-356
    • Zivin, R.1    Zehring, W.2    Rothman-Denes, L.B.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.