Rapid maize leaf and immature ear responses to UV-B radiation

Frontiers in Plant Science

Volumn 2, Issue JUL, 2011, Pages

  Casati, Paula ^a   Morrow, Darren J ^b   Fernandes, John F ^b   Walbot, Virginia ^b  

^a UNIVERSIDAD NACIONAL DE ROSARIO   (Argentina)

^b STANFORD UNIVERSITY   (United States)

Author keywords

Metabolomics; Microarray analysis; Myoinositol; UV B radiation; UVR8; Zea mays

Indexed keywords

EID: 84856666312     PISSN: None     EISSN: 1664462X     Source Type: Journal    
DOI: 10.3389/fpls.2011.00033     Document Type: Article

References (28)

1. Bieza, K., and Lois, R. (2001). An Arabidopsis mutant tolerant to lethal ultraviolet- B levels shows constitutively elevated accumulation of fla-vonoids and other phenolics. Plant Physiol. 126, 1105-1115.
2. Blanding, C. R., Simmons, S. J., Casati, P., Walbot, V., and Stapleton, A. E. (2007). Coordinated regulation of maize genes during increasing exposure to ultraviolet radiation: identification of ultraviolet-responsive genes, functional processes and associated potential promoter motifs. Plant Biotechnol. J. 5, 677-695.
3. Bohnert, H. J., Nelson, D. E., and Jensen, R. G. (1995). Adaptations to environmental stresses. Plant Cell 7, 1099-1111.
4. Britt, A. B. (1996). DNA damage and repair in plants. Annu. Rev. Plant Physiol. Plant Mol. Biol. 4, 75-100.
5. Brown, B. A., Cloix, C., Jiang, G. H., Kaiserli, E., Herzyk, P., Kliebenstein, D. J., and Jenkins, G. I. (2005). A UV-B-specific signaling component orchestrates plant UV protection. Proc. Natl. Acad. Sci. U.S.A. 102, 18225-18230.
6. Casati, P., Campi, M., Morrow, D. J., Fernandes, J. F., and Walbot, V. (2011a). Transcriptomic, proteomic and metabolomic analysis of UV-B signaling in maize. BMC Genomics 12, doi:10.1186/1471-2164-12-321
7. Casati, P., Campi, M., Morrow, D. J., Fernandes, J., and Walbot, V. (2011b). Transcriptomic, proteomic and metabolomic analysis of maize responses to UV-B: comparison of greenhouse and field growth conditions. Plant Signal. Behav. (in press).
8. Casati, P., and Walbot, V. (2003). Gene expression profiling in response to ultraviolet radiation in Zea mays genotypes with varying flavonoid content. Plant Physiol. 132, 1739-1754.
9. Casati, P., and Walbot, V. (2004). Rapid transcriptome responses of maize (Zea mays) to UV-B in irradiated and shielded tissues. Genome Biol. 5, R16.
10. Casati, P., and Walbot, V. (2005). Differential accumulation of maysin and rhamnosylisorientin in leaves of high altitude landraces of maize after UV-B exposure. Plant Cell Environ. 28, 788-799.
11. Casati, P., and Walbot, V. (2008). Maize lines expressing RNAi to chroma-tin remodeling factors are similarly hypersensitive to UV-B radiation but exhibit distinct transcriptome responses. Epigenetics 3, 216-229.
12. Favory, J.-J, Stec, A., Gruber, H., Rizzini, L., Oravecz, A., Funk, M., Albert, A., Cloix, C., Jenkins, G. I., Oakeley, E. J., Seidlitz, H. K., Nagy, F., and Ulm, R. (2009). Interaction of COP1 and UVR8 regulates UV-B-induced photo-morphogenesis and stress acclimation in Arabidopsis. EMBO J. 28, 591-601.
13. Frohnmeyer, H., and Staiger, D. (2003). Ultraviolet-B radiation-mediated responses in plants. Balancing damage and protection. Plant Physiol. 133, 1420-1428.
14. Kerr, K. M., and Churchill, G. A. (2001). Statistical design and the analysis of gene expression microarray data. Genet. Res. 77, 123-128.
15. Kopka, J., Schauer, N., Krueger, S., Birkemeyer, C., Usadel, B., Bergmuller, E., Dormann, P., Weckwerth, W., Gibon, Y., Stitt, M., Willmitzer, L., Fernie, A. R., and Steinhauser, D. (2005). GMD@CSB. DB: the golm metabolome database. Bioinformatics 21, 1635-1638.
16. Landry, L. G., Stapleton, A. E., Lim, J., Hoffman, P., Hays, J. B., Walbot, V., and Last, R. L. (1997). An Arabidopsis photolyase mutant is hypersensitive to ultraviolet-B radiation. Proc. Natl. Acad. Sci. U.S.A. 94, 328-332.
17. Li, J., Ou-Lee, T.-M., Raba, R., Amundson, R. G., and Last, R. L. (1993). Arabidopsis flavonoid mutants are hypersensitive to UV-B radiation. Plant Cell 5, 171-179.
18. Lisec, J., Schauer, N., Kopka, J., Willmitzer, L., and Fernie, A. (2006). Gas chroma-tography mass spectrometry-based metabolite profiling in plants. Nat. Protoc. 1, 387-396.
19. Loewus, F. A., and Murthy, P. P. (2000). Myo-inositol metabolism in plants. Plant Sci. 150, 1-19.
20. Oravecz, A., Baumann, A., Maté, Z., Brzezinska, A., Molinier, J., Oakeley, E. J., Adam, E., Schafer, E., Nagy, F., and Ulm, R. (2006). CONSTITUTIVELY PHOTOMORPHOGENIC1 is required for the UV-B response in Arabidopsis. Plant Cell 18, 1975-1990.
21. Rizzini, L., Favory, J.-J., Cloix, C., Faggionato, D., O'Hara, A., Kaiserli, E., Baumeister, R., Schäfer, E., Nagy, F., Jenkins, G. I., and Ulm, R. (2011). Perception of UV-B by the Arabidopsis UVR8 protein. Science 332, 103-106.
22. Rozen, S., and Skaletsky, H. J. (2000). "Primer3 on the WWW for general users and for biologist programmers," in Bioinformatics Methods and Protocols: Methods in Molecular Biology, eds S. Krawetz, S. Misener, and N. J. Totowa (Totowa, NJ: Humana Press), 365-386.
23. Schauer, N., Steinhauser, D., Strelkov, S., Schomburg, D., Allison, G., Moritz, T., Lundgren, K., Roessner-Tunali, U., Forbes, M. G., Willmitzer, L., Fernie, A. R., and Kopka, J. (2005). GC-MS libraries for the rapid identification of metabolites in complex biological samples. FEBS Lett. 579, 1332-1337.
24. Skibbe, D. S., Fernandes, J. F., Medzihradszky, K. F., Burlingame, A. L., and Walbot, V. (2009). Mutator transposon activity reprograms the transcriptomes and proteomes of developing maize anthers. Plant J. 59, 622-633.
25. Smyth, G. K. (2005). "Limma: linear models for microarray data," in Bioinformatics and Computational Biology Solutions using R and Bioconductor, eds R. Gentleman, V. Carey, S. Dudoit, R. Irizarry, and W. Huber (New York: Springer), 397-420.
26. Stapleton, A. E., and Walbot, V. (1994). Flavonoids can protect maize DNA from the induction of ultraviolet-radiation damage. Plant Physiol. 105, 881-889.
27. Ulm, R., Baumann, A., Oravecz, A., Maté, Z., Adam, E., Oakeley, E. J., Schafer, E., and Nagy, F. (2004). Genome-wide analysis of gene expression reveals function of the bZIP transcription factor HY5 in the UV-B response of Arabidopsis. Proc. Natl. Acad. Sci. U.S.A. 101, 1397-1402.
28. Zhao, S., and Fernald, R. (2005). Comprehensive algorithm for quantitative real-time polymerase chain reaction. J. Comput. Biol. 12, 1045-1062.