Gene expression profiling in response to ultraviolet radiation in maize genotypes with varying flavonoid content

Plant Physiology

Volumn 132, Issue 4, 2003, Pages 1739-1754

  Casati, Paula ^a   Walbot, Virginia ^a  

^a STANFORD UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

GENES; PIGMENTS; PROTEINS; ULTRAVIOLET RADIATION;

HYBRIDIZATION;

PLANTS (BOTANY);

EMBRYOPHYTA; EUKARYOTA; ZEA; ZEA MAYS;

EID: 0042890597     PISSN: 00320889     EISSN: None     Source Type: Journal    
DOI: 10.1104/pp.103.022871     Document Type: Article

References (68)

1. Alfenito MR, Souer E, Goodman CD, Buell R, Mol J, Koes R, Walbot V (1998) Functional complementation of anthocyanin sequestration in the vacuole by widely divergent glutathione S-transferases. Plant Cell 10: 1135-1149
2. Arnots T, Murphy TM (1991) A comparison of the effects of a fungal elicitor and ultraviolet radiation on ion transport and hydrogen peroxide in rose cells. Environ Exp Bot 31: 209-216
3. Ballaré CL, Rousseaux MC, Searles PS, Zaller JG, Giordano CV, Robson TM, Caldwell MM, Sala OE, Scopel AL (2001) Impacts of solar ultraviolet-B radiation on terrestrial ecosystems of Tierra del Fuego (southern Argentina): an overview of recent progress. J Photochem Photobiol B Biol 62: 67-77
4. Bieza K, Lois R (2001) An Arabidopsis mutant tolerant to lethal ultraviolet-B levels shows constitutively elevated accumulation of flavonoids and other phenolics. Plant Physiol 126: 1105-1115
5. Bischof K, Krabs G, Wiencke C, Hanelt D (2002) Solar ultraviolet radiation affects the activity of ribulose-1,5-bisphosphate carboxylase-oxygenase and the composition of photosynthetic and xanthophyll cycle pigments in the intertidal green alga Ulva lactuca L. Planta 215: 502-509
6. Bjorn LO (1994) Introduction. In RE Kendrick, GHM Kronenberg, eds, Photomorphogenesis in Plants, Ed 2. Kluwer Academic Publishers, Boston, pp 3-25
7. Brazma A, Hingamp P, Quackenbush J, Sherlock G, Spellman P, Stoeckert C, Aach J, Ansorge W, Ball CA, Causton HC et al. (2001) Minimum information about a microarray experiment (MIAME): toward standards for microarray data. Nat Genet 29: 365-371
8. Britt AB (1996) DNA damage and repair in plants. Annu Rev Plant Physiol Plant Mol Biol 4: 75-100
9. Britt AB, Chen JJ, Wykoff D, Mitchell D (1993) A UV-sensitive mutant of Arabidopsis defective in the repair of pyrimidine-pyrimidinone (6-4) dimmers. Science 261: 1571-1574
10. Brosche M, Schuler MA, Kalbina I, Connor L, Strid A (2002) Gene regulation by low level UV-B radiation: identification by DNA array analysis. Photochem Photobiol Sci 1: 656-664
11. Caldwell MM, Robberecht R, Flint SD (1983) Internal filters: prospects for UV-acclimation in higher plants. Physiol Plant 58: 445-450
12. Catterou M, Dubois F, Schaller H, Aubanelle L, Vilcot B, Sangwan-Norreel BS, Sangwan RS (2001) Brassinosteroids, microtubules and cell elongation in Arabidopsis thaliana: II. Effects of brassinosteroids on microtubules and cell elongation in the bul1 mutant. Planta 212: 673-683
13. Chiang PK, Gordon RK, Tal J, Zeng GC, Doctor BP, Pardhasaradhi K, McCann PP (1996) S-Adenosylmethionine and methylation. FASEB J 10: 471-480
14. Churchill GA (2002) Fundamentals of experimental design for cDNA microarrays. Nat Genet 32: 490-495
15. Coller HA, Grandori C, Tamayo P, Colbert T, Lander ES, Eisenman RN, Golub TR (2000) Expression analysis with oligonucleotide microarrays reveals that MYC regulates genes involved in growth, cell cycle, signaling, and adhesion. Proc Natl Acad Sci USA 97: 3260-3265
16. Dai Q, Yan B, Huang S, Liu X, Peng S, Miranda MLM, Chavez AQ, Vegara BS, Olszyk D (1997) Response to oxidative stress defense systems in rice (Oryza sativa) leaves with supplemental UV-B radiation. Physiol Plant 101: 301-308
17. Desikan R, Mackerness SAH, Hancock JT, Neill SJ (2001) Regulation of the Arabidopsis transcriptome by oxidative stress. Plant Physiol 127: 159-172
18. Dooner HK (1983) Coordinate genetic regulation of flavonoid biosynthetic enzymes in maize. Mol Gen Genet 189: 136-141
19. Edwards R, Dixon DP, Walbot V (2000) Plant glutathione S-transferases: enzymes with multiple functions in sickness and in health. Trends Plant Sci 5: 193-198
20. Eisen MB, Spellman PT, Brown PO, Botstein D (1998) Cluster analysis and display of genome-wide expression patterns. Proc Natl Acad Sci USA 95: 14863-14868
21. Gerhardt KE, Wilson MI, Greenberg BM (1999) Tryptophan photolysis leads to a UVB-induced 66 kDa photoproduct of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in vitro and in vivo. Photochem Photobiol 70: 49-56
22. 2 in red and green leaves after mechanical injury. Plant Cell Environ 25: 1261-1269
23. Green R, Fluhr R (1995) UV-B induced PR-1 accumulation is mediated by active oxygen species. Plant Cell 2: 203-212
24. Gross S, Knebel A, Tenev T, Neininger A, Gaestel M, Herrlich P, Bohmer FD (1999) Inactivation of protein-tyrosine phosphatases as mechanism of UV-induced signal transduction. J Biol Chem 274: 26378-26386
25. Harborne JB, Grayer RJ (1988) The anthocyanins. In JB Harborne, ed, The Flavonoids. Chapman and Hall, London, pp 1-20
26. Ingvardsen C, Veierskov B (2001) Ubiquitin- and proteasome-dependent proteolysis in plants. Physiol Plant 112: 451-459
27. Jansen MAK, Gaba V, Greenberg BM (1998) Higher plants and UV-B radiation: balancing damage, repair and acclimation. Trends Plant Sci 3: 131-135
28. Jordan BR (1996) The effects of UV-B radiation on plants: a molecular perspective. In JA Callow, ed, Advances in Botanical Research. Academic Press, Boca Raton, FL, pp 97-162
29. Kawasaki S, Borchert C, Deyholos M, Wang H, Brazille S, Kawai K, Galbraith D, Bohnert HJ (2001) Gene expression profiles during the initial phase of salt stress in rice. Plant Cell 13: 889-905
30. Klessig DF, Durner J, Noad R, Navarre DA, Wendehenne D, Kumar D, Zhou JM, Shah J, Zhang SQ, Kachroo P et al. (2000) Nitric oxide and salicylic acid signaling in plant defense. Proc Natl Acad Sci USA 97: 8849-8855
31. Kramer ER, Scheuringer N, Podtelejnikov V, Mann M, Peters JM (2000) Mitotic regulation of the APC activator proteins CDC20 and CDH1. Mol Biol Cell 11: 1555-1569
32. Lamb C, Dixon RA (1997) The oxidative burst in plant disease resistance. Annu Rev Plant Physiol Plant Mol Biol 48: 251-275
33. Landry LG, Chapple CCS, Last RL (1995) Arabidopsis mutants lacking phenolic sunscreens exhibit enhanced ultraviolet-B injury and oxidative damage. Plant Physiol 109: 1159-1166
34. Landry LG, Stapleton AE, Lim J, Hoffman P, Hays JB, Walbot V, Last RL (1997) An Arabidopsis photolyase mutant is hypersensitive to ultraviolet-B radiation. Proc Natl Acad Sci USA 94: 328-332
35. Logemann E, Tavernaro A, Schulz WG, Somssich IE, Hahlbrock K (2000) UV light selectively coinduces supply pathways from primary metabolism and flavonoid secondary product formation in parsley. Proc Natl Acad Sci USA 97: 1903-1907
36. Logemann E, Wu SC, Schroder J, Schmelzer E, Somssich IE, Hahlbrock K (1995) Gene activation by UV light, fungal elicitor or fungal infection in Petroselinum crispum is correlated with repression of cell cycle-related genes. Plant J 8: 865-876
37. Mackerness SAH, John CF, Jordan B, Thomas B (2001) Early signaling components in ultraviolet-B responses: distinct roles for different reactive oxygen species and nitric oxide. FEBS Lett 489: 237-242
38. Mackerness SAH, Jordan BR (1999) Changes in gene expression in response to ultraviolet B-induced Stress. In M Pessarakli, eds, Handbook of Plant and Crop Stress, Ed 2. Marcel Dekker, New York, pp 749-768
39. Mackerness SAH, Thomas B, Jordan BR (1997) The effect of supplementary ultraviolet-B radiation on transcripts, translation and stability of chloroplast proteins and pigment formation in Pisum sativum L. J Exp Bot 48: 729-738
40. Maleck K, Levine A, Eulgem T, Morgan A, Schmid J, Lawton KA, Dangl JL, Dietrich RA (2000) The transcriptome of Arabidopsis thaliana during systemic acquired resistance. Nature Gen 26: 403-410
41. Marty I, Brugidou C, Chartier Y, Meyer Y (1993) Growth related gene expression in Nicotiana tabacum mesophyll protoplasts. Plant J 4: 265-278
42. Mazza CA, Boccalandro HE, Giordano CV, Battista D, Scopel AL, Ballaré CL (2000) Functional significance and induction by solar radiation of ultraviolet-absorbing sunscreens in field-grown soybean crops. Plant Physiol 122: 117-125
43. Miles GP, Samuel MA, Ellis BE (2002) Suramin inhibits oxidant signalling in tobacco suspension-cultured cells. Plant Cell Environ 25: 521-527
44. Mironov V, DeVeylder L, VanMontagu M, Inzé D (1999) Cyclin-dependent kinases and cell division in plants: the nexus. Plant Cell 11: 509-521
45. Noah JW, Shapkina T, Wollenzien P (2000) UV-induced crosslinks in the 16S rRNAs of Escherichia coli, Bacillus subtilis and Thermus aquaticus and their implications for ribosome structure and photochemistry. Nucleic Acids Res 28: 3785-3792
46. Papadopoulos YA, Gordon RJ, McRae KB, Bush RS, Belanger G, Butler EA, Fillmore SAE, Morrison M (1999) Current and elevated levels of UV-B radiation have few impacts on yields of perennial forage crops. Global Change Biol 5: 847-856
47. Paul ND, Gwynn-Jones D (2003) Ecological roles of solar UV radiation: towards an integrated approach. Trends Ecol Evol 18: 48-55
48. Reymond P, Weber H, Damond M, Farmer EE (2000) Differential gene expression in response to mechanical wounding and insect feeding in Arabidopsis. Plant Cell 12: 707-719
49. Rozema J, vandeStaaij J, Bjorn LO, Caldwell M (1997) UV-B as an environmental factor in plant life: stress and regulation. Trends Ecol Evol 12: 22-28
50. Schaffer R, Landgraf J, PerezAmador M, Wisman E (2000) Monitoring genome-wide expression in plants. Curr Opin Biotechnol 11: 162-167
51. Schenk PM, Kazan K, Wilson I, Anderson JP, Richmond T, Somerville SC, Manners JM (2000) Coordinated plant defense responses in Arabidopsis revealed by microarray analysis. Proc Natl Acad Sci USA 97: 11655-11660
52. Schurmann P, Jacquot JP (2000) Plant thioredoxin systems revisited. Annu Rev Plant Physiol Plant Mol Biol 51: 371-400
53. Searles PS, Flint SD, Caldwell MM (2001) A meta analysis of plant field studies simulating stratospheric ozone depletion. Oecologia 127: 1-10
54. Seki M, Narusaka M, Abe H, Kasuga M, Yamaguchi-Shinozaki K, Carninci P, Hayashizaki Y, Shinozaki K (2001) Monitoring the expression pattern of 1,300 Arabidopsis genes under drought and cold stresses by using a full-length cDNA microarray. Plant Cell 13: 61-72
55. Sheahan JJ (1996) Sinapate esters provide greater UV-B attenuation than flavonoids in Arabidopsis thaliana (Brassicaceae). Am J Bot 83: 679-686
56. Stapleton AE, Thornber CS, Walbot V (1997) UV-B component of sunlight causes measurable damage in field-grown maize (Zea mays L): Developmental and cellular heterogeneity of damage and repair. Plant Cell Environ 20: 279-290
57. Stapleton AE, Walbot V (1994) Flavonoids can protect maize DNA from the induction of ultraviolet-radiation damage. Plant Physiol 105: 881-889
58. Stratmann JW, Stelmach BA, Weller EW, Ryan CA (2000) UVB/UVA radiation activates a 48 kDa myelin basic protein kinase and potentiates wound signaling in tomato leaves. Photochem Photobiol 71: 116-123
59. Thimm O, Essigmann B, Kloska S, Altmann T, Buckhout TJ (2001) Response of Arabidopsis to iron deficiency stress as revealed by microarray analysis. Plant Physiol 127: 1030-1043
60. Turunen M, Heller W, Stich S, Sandermann H, Sutinen ML, Norokorpi Y (1999) UV screening in lodgepole pine (Pinus contorta ssp. latifolia) cotyledons and needles. Environ Pollut 106: 219-228
61. Valéry C, Bon B, Barge J, Grob JJ, Verrando P (2001) Gene expression profiling with cDNA microarray technology of ultraviolet-B irradiated normal human melanocytes: relation to melanocarcinogenesis [Abstract]. J Inv Dermatol 117: 799
62. Walbot V (1999) UV-B damage amplified by transposons in maize. Nature 397: 398-399
63. Walbot V (2001) Imprinting of R-r, paramutation of B-I and Pl, and epigenetic silencing of MuDR/Mu transposons in Zea mays L. are coordinately affected by inbred background. Genet Res 77: 219-226
64. Winkel-Shirley B (2001) Flavonoid biosynthesis: a colorful model for genetics, biochemistry, cell biology, and biotechnology. Plant Physiol 126: 485-493
65. Wojtaszek P (1997) Oxidative burst: an early plant response to pathogen infection. Biochem J 322: 681-692
66. Yang YH, Speed T (2002) Design issues for cDNA microarray experiments. Nat Rev 3: 579-588
67. Zavala JA, Scopel AL, Ballaré CL (2001) Effects of ambient UV-B radiation on soybean crops: impact on leaf herbivory by Anticarsia gemmatalis. Plant Ecol 156: 121-130
68. Yalamanchili RD, Stratmann JW (2002) Ultraviolet-B activates components of the systemin signaling pathway in Lycopersicon peruvianum suspension-cultured cells. J Biol Chem 277: 28424-28430