Characterization of European forage maize lines for stover composition and associations with polymorphisms within O-methyltransferase genes

Plant Science

Volumn 185-186, Issue , 2012, Pages 281-287

  Brenner, Everton A ^a   Salazar, Andre M ^a   Zabotina, Olga A ^a   Lübberstedt, Thomas ^a  

^a IOWA STATE UNIVERSITY   (United States)

Author keywords

Cellulose; Hemicellulose; Lignin; Monosaccharide composition of hemicellulose; O methyltransferase

Indexed keywords

ALCOHOL; CELLULOSE; GLUCURONOARABINOXYLAN; HEMICELLULOSE; LIGNIN; METHYLTRANSFERASE; MONOSACCHARIDE; POLYSACCHARIDE; VEGETABLE PROTEIN; XYLAN;

ARTICLE; BREEDING; CELL WALL; CHROMOSOME MAP; GENE LINKAGE DISEQUILIBRIUM; GENETIC POLYMORPHISM; GENETICS; MAIZE; METABOLISM; PHENOTYPE; QUANTITATIVE TRAIT LOCUS;

BREEDING; CELL WALL; CELLULOSE; CHROMOSOME MAPPING; ETHANOL; LIGNIN; LINKAGE DISEQUILIBRIUM; METHYLTRANSFERASES; MONOSACCHARIDES; PHENOTYPE; PLANT PROTEINS; POLYMORPHISM, GENETIC; POLYSACCHARIDES; QUANTITATIVE TRAIT LOCI; XYLANS; ZEA MAYS;

ARA; ZEA MAYS;

EID: 84856647406     PISSN: 01689452     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.plantsci.2011.11.016     Document Type: Article

References (58)

1. Altschul S.F., Gish W., Miller W., Myers E.W., Lipman D.J. Basic local alignment search tool. J. Mol. Biol. 1990, 215:403-410.
2. Andersen J.R., Zein I., Wenzel G., Darnhofer B., Eder J., Ouzunova M., Lübberstedt T. Characterization of phenylpropanoid pathway genes within European maize (Zea mays L.) inbreds. BMC Plant Biol. 2008, 8:2.
3. Andersen J.R., Zein I., Wenzel G., Krützfeldt B., Eder J., Ouzunova M., Lübberstedt T. High levels of linkage disequilibrium and associations with forage quality at a phenylalanine ammonia-lyase locus in European maize (Zea mays L.) inbreds. Theor. Appl. Genet. 2007, 114:307-319.
4. Barrière Y., Argillier O. Brown-midrib genes of maize: a review. Agronomie 1993, 13:865-876.
5. Boerjan W., Ralph J., Baucher M. Lignin biosynthesis. Annu. Rev. Plant Biol. 2003, 54:519-546.
6. Brenner E.A., Zein I., Chen Y., Andersen J.R., Wenzel G., Ouzunova M., Eder J., Darnhofer B., Frei U., Barrière Y., Lübberstedt T. Polymorphisms in O-methyltransferase genes are associated with stover cell wall digestibility in European maize (Zea mays L.). BMC Plant Biol. 2010, 10:27.
7. Cardinal A.J., Lee M., Moore K.J. Genetic mapping and analysis of quantitative trait loci affecting fiber and lignin content in maize. Theor. Appl. Genet. 2003, 106:866-874.
8. Chabannes M., Barakate A., Lapierre C., Marita J.M., Ralph J., Pean M., et al. Strong decrease in lignin content without significant alteration of plant development is induced by simultaneous down-regulation of cinnamoyl CoA reductase (CCR) and cinnamyl alcohol dehydrogenase (CAD) in tobacco plants. Plant J. 2001, 28:257-270.
9. Chang V.S., Holtzapple M.T. Fundamental factors affecting biomass enzymatic reactivity. Appl. Biochem. Biotechnol. 2000, 84-86:5-37.
10. Chen F., Dixon R.A. Lignin modification improves fermentable sugar yields for biofuel production. Nat. Biotechnol. 2007, 25:759-761.
11. Chen Y., Zein I., Brenner E.A., Andersen J.R., Landbeck M., Ouzunova M., Lübberstedt T. Polymorphisms in monolignol biosynthetic genes are associated with biomass yield and agronomic traits in European maize (Zea mays L.). BMC Plant Biol. 2010, 10:12.
12. Civardi L., Rigau J., Puigdomènech P. Nucleotide sequence of two cDNAs coding for caffeoyl-coenzyme A O-methyltransferase (CCoAOMT) and study of their expression in Zea mays. Plant Physiol. 1999, 120:1026-1113.
13. Colenbrander V.L., Lechtenberg L.F., Bauman L.F., Muller L.D., Rhykerd C.L. Nutritive value of brown midrib corn silage. J. Anim. Sci. 1972, 35:1113.
14. Colenbrander V.L., Lechtenberg L.F., Bauman L.F. Digestibility and feeding value of brown midrib corn stover silage. J. Anim. Sci. 1973, 37:294-295.
15. Colenbrander V.L., Lechtenberg L.F., Bauman L.F. Feeding value of low lignin corn silage. J. Anim. Sci. 1975, 41:332-333.
16. Collazo P., Montoliu L., Puigdomenech P., Rigau J. Structure and expression of the lignin O-methyltransferase gene from Zea mays L. Plant Mol. Biol. 1992, 20:857-867.
17. Dhugga K.S. Maize biomass yield and composition for biofuels. Crop Sci. 2007, 47:2211-2227.
18. Falush D., Stephens M., Pritchard J.K. Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics 2003, 164:1567-1587.
19. Frenchick G.E., Johnson D.G., Murphy J.M., Otterby D.E. Brown midrib corn silage in dairy cattle rations. J. Dairy Sci. 1976, 59:2126-2129.
20. Fukushima R.S., Hatfield R.D. Comparison of the acetyl bromide spectrophotometric method with other analytical lignin methods for determining lignin concentration in forage samples. J. Agric. Food Chem. 2004, 52:3713-3720.
21. Gallais A., Huguet L., Berthet H., Bertin G., Broqua B., Mourguet A., Traineau R. Preliminary evaluation of brown midrib maize hybrids for their feeding and agronomic value in France. Improvement of Quality Traits of Maize for Grain and Silage Use 1980, 319-339. Martinus Nijhoff, The Hague. W.G. Pollmer, R.H. Phipps (Eds.).
22. Gardiner J., Schroeder S., Polacco M.L., Sanchez-Villeda H., Fang Z., Morgante M., Landewe T., Fengler K., Useche F., Hanafey M., Tingey S., Chou H., Wing R., Soderlund C., Coe E.H. Anchoring 9,371 maize expressed sequence tagged unigenes to the Bacterial Artificial Chromosome contig map by two-dimensional overgo hybridization. Plant Physiol. 2004, 134:1317-1326.
23. Grabber J.H., Ralph J., Lapierre C., Barriere Y. Genetic and molecular basis of grass cell wall degradability. I. Lignin-cell wall matrix interactions. Comptes Rendus Biol. 2004, 327:455-465.
24. Guillaumie S., San Clemente H., Deswarte C., Martinez Y., Lapierre C., Murigneux A., Barrière Y., Pichon M., Goffner D. MAIZEWALL. Database and developmental gene expression profiling of cell wall biosynthesis and assembly in maize. Plant Physiol. 2007, 143:339-363.
25. Guillet-Claude C., Birolleau-Touchard C., Manicacci D., Fourmann M., Barraud S., Carret V., Martinant J.P., Barrière Y. Genetic diversity associated with variation in silage corn digestibility for three O-methyltransferase genes involved in lignin biosynthesis. Theor. Appl. Genet. 2004, 110:126-135.
26. Halpin C., Holt K., Chojecki J., Oliver D., Chabbert B., Monties B., Edwards K., Barakate A., Foxon G.A. Brown-midrib maize (bm1)-a mutation affecting the cinnamyl alcohol dehydrogenase gene. Plant J. 1998, 14:545-553.
27. Hardy O.J., Vekemans X. Spagedi: a versatile computer program to analyse spatial genetic structure at the individual or population levels. Mol. Ecol. Notes 2002, 2:618-620.
28. Holm S. A simple sequentially rejective Bonferroni test procedure. Scand. J. Stat. 1979, 6:65-70.
29. Hu W.J., Harding S., a Lung J., Popko J.L., Ralph J., Stokke D.D., et al. Repression of lignin biosynthesis promotes cellulose accumulation and growth in transgenic trees. Nat. Biotechnol. 1999, 17(8):808-812. 10.1038/11758.
30. Hu W.J., Harding S.A., Lung J., Popko J.L., Ralph J., Stokke D.D., Tsai C.J., Chiang V.L. Repression of lignin biosynthesis promotes cellulose accumulation and growth in transgenic trees. Nat. Biotechnol. 1999, 17:808-812.
31. Humphreys J.M., Chapple C. Rewriting of new methods for the investigation of lignin structure the lignin roadmap. Curr. Opin. Plant Biol. 2002, 5:224-229.
32. Keith E.A., Colenbrander V.F., Perry T.W., Bauman L.F. Performance of feedlot cattle fed brown midrib-three or normal corn silage with various levels of additional corn grain. J. Anim. Sci. 1981, 52:8-13.
33. Krakowsky M.D., Lee M., Coors J.G. Quantitative trait loci for cell-wall components in recombinant inbred lines of maize (Zea mays L.) I: stalk tissue. Theor. Appl. Genet. 2005, 111:337-346.
34. Krakowsky M.D., Lee M., Coors J.G. Quantitative trait loci for cell-wall components in recombinant inbred lines of maize (Zea mays L.) II: leaf sheat tissue. Theor. Appl. Genet. 2006, 112:717-726.
35. Leple J.C., Dauwe R., Morreel K., et al. Downregulation of cinnamoyl-coenzyme A reductase in poplar: multiple-level phenotyping reveals effects on cell wall polymer metabolism and structure. Plant Cell 2007, 19:3669-3691.
36. Loiselle B.A., Sork V.L., Nason J., Graham C. Spatial genetic structure of a tropical understory shrub, Psychotria officinalis (Rubiaceae). Am. J. Bot. 1995, 82:1420-1425.
37. Lorenz A.J., Anex R.P., Isci A., Coors J.G., de Leon N., Weimer P.J. Forage quality and composition measurements as predictors of ethanol yield from maize (Zea mays L.) stover. Biotechnol. Biofuels 2009, 2:5.
38. Lorenzana R., Lewis M., Jung H., Bernardo R. Quantitative trait loci and trait correlations for maize stover cell wall composition and glucose release for cellulosic ethanol. Crop. Sci. 2010, 50:541-555.
39. Mechin V., Argillier O., Hebert Y., Guingo E., Moreau L., Charcosset A., Barriere Y. Genetic analysis and QTL mapping of cell wall digestibility and lignification in silage maize. Crop. Sci. 2001, 41:690-697.
40. Muller L.D., Lechtenberg V.L., Bauman L.F., Barnes R.F., Rhykerd C.L. In vivo evaluation of a brown midrib mutant of Zea mays. J. Anim. Sci. 1972, 35:883-889.
41. Pauly M., Keegstra K. Plant cell wall polymers as precursors for biofuels. Curr. Opin. Plant Biol. 2010, 13:1-8.
42. Perlack R.D., Wright L.L., Turhollow A.F., Graham R.L., Strokes B.J., Erbach D.C. Biomass as Feedstock for a Bioenergy and Bioproducts Industry: The Technical Feasibility of a Billion-ton Annual Supply 2005, USDA-DOE, ORNL/TM-2006/66.
43. Pichon M., Courbou I., Beckert M., Boudet A-M., Grima-Pettenati J. Cloning and characterization of two maize cDNAs encoding Cinnamoyl-CoA Reductase (CCR) and differential expression of the corresponding genes. Plant Mol. Biol. 1998, 38:671-676.
44. Pichon M., Deswarte C., Gerentes D., Guillaumie S., Lapierre C., Toppan A., Barrière Y., Goffner D. Variation in lignin and cell wall digestibility in Caffeic acid O-methyltransferase downregulated maize half-sib progenies in field experiments. Mol. Breed. 2006, 18:253-261.
45. Piepho H.P., Möhring J. Computing heritability and selection response from unbalanced plant breeding trials. Genetics 2007, 177:1881-1888.
46. Pritchard J.K., Stephens M., Donnelly P. Inference of population structure using multilocus genotype data. Genetics 2000, 155:945-959.
47. P.C. Puigdomenech, P. Perez, A. Murigneux, J.P. Martinant, M.H. Tixier, J. Rigau, L. Civardi, T. Maes, Identifying genes associated with a QTL corn digestibility locus. Patent 2001, WO 0155395-A.
48. Risch N.J. Searching for genetic determinants in the new millennium. Nature 2000, 405:847-856.
49. Rosler J., Krekel F., Amrhein N., Schmid J. Maize phenylalanine ammonia-lyase has tyrosine ammonia-lyase activity. Plant Physiol. 1997, 113:175-179.
50. Saghai-Maroof M.A., Soliman K.M., Jorgensen R.A., Allard R.W. Ribosomal DNA spacer-length polymorphisms in barley: Mendelian inheritance, chromosomal location, and population dynamics. PNAS 1984, 81:8014-8018.
51. Sasaki M., Yamamoto Y., Matsumoto H. Ligin deposition induced by aluminium in wheat (Triticum aestivum) roots. Physiol. Plant. 1996, 96:193-198.
52. Sloneker J.H. Determination of cellulose and apparent hemicellulose in plant tissue by gas liquid chromatography. Anal. Biochem. 1971, 43:539-546.
53. Thompson J.D., Higgins D.G., Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res. 1994, 22:4673-4680.
54. Vogel J. Unique aspects of the grass cell wall. Curr. Opin. Plant Biol. 2008, 11:301-307.
55. Yu J.M., Pressoir G., Briggs W.H., Bi I.V., Yamasaki M., Doebley J.F., McMullen M.D., Gaut B.S., Nielsen D.M., Holland J.B., Kresovich S., Buckler E.S. A unified mixed-model method for association mapping that accounts for multiple levels of relatedness. Nat. Genet. 2006, 38:203-208.
56. Yang B., Wyman C.E. Effect of xylan and lignin removal by batch and flowthrough pretreatment on the enzymatic digestibility of corn stover cellulose. Biotechnol. Bioeng. 2004, 86:88-95.
57. Zabotina O., Malm E., Drakakaki G., Bulone V., Raikhel N. Identification and preliminary characterization of a new chemical affecting glucosyltransferase activities involved in plant cell wall biosynthesis. Mol. Plant 2008, 1:977-989.
58. Zein I., Wenzel G., Andersen J.R., Lübberstedt T. Low level of linkage disequilibrium at the COMT (caffeic acid O-methyltransferase) locus in European maize (Zea mays L.). Genet. Resour. Crop. Evol. 2007, 54:139-148.