Molecular identification of two vegetative compatibility groups of fusarium oxysporum f. sp. cepae

Phytopathology

Volumn 102, Issue 2, 2012, Pages 204-213

  Southwood, Michael J ^a   Viljoen, Altus ^a   Mostert, Glaudina ^a   McLeod, Adéle ^a  

^a STELLENBOSCH UNIVERSITY   (South Africa)

Author keywords

[No Author keywords available]

Indexed keywords

FUNGAL DNA; PRIMER DNA;

ARTICLE; CHEMISTRY; DNA FINGERPRINTING; DNA SEQUENCE; FUSARIUM; GENETIC MARKER; GENETIC VARIABILITY; GENETICS; GENOTYPE; ISOLATION AND PURIFICATION; MICROBIOLOGY; MOLECULAR CLONING; MOLECULAR GENETICS; MULTIPLEX POLYMERASE CHAIN REACTION; NUCLEOTIDE SEQUENCE; ONION; PATHOGENICITY; PLANT DISEASE; SOUTH AFRICA; VIRULENCE;

BASE SEQUENCE; CLONING, MOLECULAR; DNA FINGERPRINTING; DNA PRIMERS; DNA, FUNGAL; FUSARIUM; GENETIC MARKERS; GENETIC VARIATION; GENOTYPE; MOLECULAR SEQUENCE DATA; MULTIPLEX POLYMERASE CHAIN REACTION; ONIONS; PLANT DISEASES; SEQUENCE ANALYSIS, DNA; SOUTH AFRICA; VIRULENCE;

ALLIUM CEPA; FUSARIUM OXYSPORUM;

EID: 84856635888     PISSN: 0031949X     EISSN: None     Source Type: Journal    
DOI: 10.1094/PHYTO-04-11-0107     Document Type: Article

References (46)

1. Alves-Santos, F. M., Ramos, B., Asunción Garciá- Sánchez, M., Eslava, A. P., and Díaz-Mínguez, J. M. 2002. A DNA-based procedure for in planta detection of Fusarium oxysporum f. sp. phaseoli. Phytopathology 92:237-244. (Pubitemid 34212826)
2. Baayen, R. P., O'Donnell, K., Bonants, P. J. M., Cigelnik, E., Kroon, L. P. N. M., Roebroeck, E. J. A., and Waalwijk, C. 2000. Gene genealogies and AFLP analyses in the Fusarium oxysporum complex identify monophyletic and nonmonophyletic formae speciales causing wilt and rot disease. Phytopathology 90:891-900. (Pubitemid 30610483)
3. Bayraktar, H., Turkkan, M., and Dolar, F. S. 2010. Characterization of Fusarium oxysporum f. sp. cepae from onion in Turkey based on vegetative compatibility and rDNA RFLP analysis. J. Phytopathol. 158:691-697.
4. Bentley, S., Pegg, K. G., and Dale, J. L. 1994. Optimization of RAPD PCR fingerprinting to analyze genetic variation within populations of Fusarium oxysporum f. sp. cubense. Phytopathology 142:64-78.
5. Chiocchetti, A., Bernardo, I., Daboussi, M.-J., Garibaldi, A., Gullino, M. L., Langin, T., and Migheli, Q. 1999. Detection of Fusarium oxysporum f. sp. dianthi in carnation tissue by PCR amplification of transposon insertions. Phytopathology 89:1169-1175.
6. Chiocchetti, A., Sciaudone, L., Durando, F., Garibaldi, A., and Migheli, Q. 2001. PCR detection of Fusarium oxysporum f. sp. basilici on basil. Plant Dis. 85:607-611. (Pubitemid 32489251)
7. Clark, C. A., Hyun, J.-W., and Hoy, M. W. 1998. Relationships among wilt-inducing isolates of Fusarium oxysporum from sweet potato and tobacco. Plant Dis. 82:530-536.
8. Daboussi, M.-J., Daviere, J. M., Graziana, S., and Langin, T. 2002. Evolution of the Fot1 transposon in the genus Fusarium: Discontinuous distribution and epigenetic inactivation. Mol. Biol. Evol. 19:510-520. (Pubitemid 34289426)
9. Daboussi, M.-J., and Langin, T. 1994. Transposable elements in the fungal plant pathogen Fusarium oxysporum. Genetics 93:49-59.
10. Daboussi, M.-J., Langin, T., and Brygoo, Y. 1992. Fot1, a new family of fungal transposable elements. Mol. Gen. Genet. 232:12-16.
11. De Haan, L. A. M., Numansen, A., Roebroeck, E. J. A., and Van Doorn, J. 2000. PCR detection of Fusarium oxysporum f. sp. gladioli race 1, causal agent of Gladiolus yellows disease, from infected corms. Plant Pathol. 49:89-100. (Pubitemid 30144376)
12. Fernandez, D., Quinten, M., Tanaoui, A., Geiger, J. P., and Langin, T. 1998. Fot1 insertions in the Fusarium oxysporum f. sp. albedinis genome provide diagnostic PCR target for detection of the date palm pathogen. Appl. Environ. Microbiol. 64:633-636. (Pubitemid 28079833)
13. Fourie, G., Steenkamp, E. T., Gordon, T. R., and Viljoen, A. 2009. Evolutionary relationships among the Fusarium oxysporum f. sp. cubense vegetative compatibility groups. Appl. Environ. Microbiol. 75:4770-4781.
14. Freeman, S., and Maymon, M. 2000. Reliable detection of the fungal pathogen Fusarium oxysporum f. sp. albedinis, causal agent of Bayoud disease of date palm, using molecular techniques. Phytoparasitica 28:341-348.
15. Galván, G. A., Koning-Boucoiran, C. F. S., Koopman, W. J. M., Burger- Meijer, K., González, P. H., Waalwijk, C., Kik, C., and. Scholten, O. E. 2008. Genetic variation among Fusarium isolates from onion, and resistance to Fusarium basal rot in related Allium species. Eur. J. Plant Pathol. 121:499-512.
16. Grajal-Martin, M. J., Simon, C. J., and Muehlbauer, F. J. 1993. Use of random amplified polymorphic DNA (RAPD) to characterize race 2 of Fusarium oxysporum f. sp. pisi. Mol. Plant Pathol. 83:612-615.
17. Groenewald, S., Van den Berg, N., Marasas, W. F. O., and Viljoen, A. 2006. The application of high-throughput amplified fragment length polymorphisms in assessing genetic diversity in Fusarium oxysporum f. sp. cubense. Mycol. Res. 110:297-305. (Pubitemid 44061647)
18. Hua-Van, A., Daviere, J. M., Kaper, F., Langin, T., and Daboussi, M.-J. 2000. Genome organization in Fusarium oxysporum: Clusters of class II transposons. Curr. Genet. 37:339-347. (Pubitemid 30307348)
19. Hua-Van, A., Langin, T., and Daboussi, M.-J. 2001. Evolutionary history of the impala transposon in Fusarium oxysporum. Mol. Biol. Evol. 18:1959-1969. (Pubitemid 32916647)
20. Jimenéz-Gasco, M. M., and Jiménez-Díaz, R. M. 2003. Development of a specific polymerase chain reaction-based assay for the identification of Fusarium oxysporum f. sp. ciceris and its pathogenic races 0, 1A, and 6. Phytopathology 93:200-209. (Pubitemid 36108584)
21. Jiménez-Gasco, M. M., Milgroom, M. G., and Jiménez- Díaz, R. M. 2004. Stepwise evolution of races in Fusarium oxysporum f. sp. ciceris inferred from fingerprinting with repetitive DNA sequences. Phytopathology 94:228-235. (Pubitemid 38504012)
22. Jiménez-Gasco, M. M, Pérez-Artés, E., and Jiménez-Díaz, R. M. 2001. Identification of pathogenic races 0, 1B/C, 5, and 6 of Fusarium oxysporum f. sp. ciceris with random amplified polymorphic DNA (RAPD). Eur. J. Plant Pathol. 107:237-248. (Pubitemid 32501055)
23. Jones, C. J., Edwards, K. J., Castaglione, S., Winfield, M. O., Sala, F., Van de Wiel, C., Bredemeijer, G., Vosman, B., Matthes, M., Daly, A., Brettschneider, R., Bettini, P., Buiatti, M., Maestri, E., Malcevschi, A., Marmiroli, N., Aert, R., Volckaert, G., Rueda, J., Linacero, R., Vazquez, A., and Karp, A. 1997. Reproducibility testing of RAPD, AFLP and SSR markers in plants by a network of European laboratories. Mol. Breed. 3:381-390. (Pubitemid 127507208)
24. Kalc Wright, G. F., Guest, D. I., Wimalajeewa, D. L. S., and Van Heeswijck, R. 1996. Characterisation of Fusarium oxysporum isolated from carnation in Australia based on pathogenicity, vegetative compatibility and random amplified polymorphic DNA (RAPD) assay. Eur. J. Plant Pathol. 102:451-457. (Pubitemid 26263065)
25. Kelly, A., Alcalá-Jiménez, A. R., Bainbridge, B. W., Heale, J. B., Pérez- Artés, E., and Jiménez-Díaz, R. M. 1994. Use of genetic fingerprinting and random amplified polymorphic DNA to characterize pathotypes of Fusarium oxysporum f. sp. ciceris infecting chickpeas. Phytopathology 84:1293-1298.
26. Kistler, H. C. 1997. Genetic diversity in the plant-pathogenic fungus Fusarium oxysporum. Phytopathology 87:474-479. (Pubitemid 27165286)
27. Leslie, J. F., and Summerell, B. A. 2006. The Fusarium Laboratory Manual. Blackwell Publishers, IA.
28. Lievens, B., Claes, L., Vakalounakis, D. J., Vanachter, A. C. R. C., and Thomma, B. P. H. J. 2007. A robust identification and detection assay to discriminate the cucumber pathogens Fusarium oxysporum f. sp. cucumerinum and f. sp. radicis-cucumerinum. Environ. Microbiol. 9:2145-2161. (Pubitemid 47222109)
29. Lievens, B., Houterman, P. M., and Rep, P. 2009. Effector gene screening allows unambiguous identification of Fusarium oxysporum f. sp. lycopersici races and discrimination from other formae speciales. FEMS Microbiol. Lett. 300:201-215.
30. Lievens, B., Rep, M., and Thomma, B. P. H. J. 2008. Recent developments in the molecular discrimination of formae speciales of Fusarium oxysporum. Pest Manage. Sci. 64:781-788. (Pubitemid 352009563)
31. Lori, G., Edel-Hermann, V., Gautheron, N., and Alabouvette, C. 2004. Genetic diversity of pathogenic and nonpathogenic populations of Fusarium oxysporum isolates from carnation fields in Argentina. Phytopathology 94:661-668. (Pubitemid 38681975)
32. Ma, L.-J., van der Does, H. C., Borkovich, K. A., Coleman, J. J, Daboussi, M.-J., Di Pietro, A., Dufresne, M., Freitag, M., Grabherr, M., Henrissat, B., Houterman, P. M., Kang, S., Shim, W.-B., Woloshuk, C., Xie, X., Xu, J.-R., Antoniw, J., Baker, S. E., Bluhm, B. H., Breakspear, A., Brown, D. W., Butchko, R. A. E., Chapman, S., Coulson, R., Coutinho, P. M., Danchin, E. G. J., Diener, A., Gale, L. R., Gardiner, D. M., Goff, S., Hammond-Kosack, K. E., Hilburn, K., Hua-Van, A., Jonkers, W., Kazan, K., Kodira, C. D., Koehrsen, M., Kumar, L., Lee, Y.-H., Li, L., Manners, J. M., Miranda-Saavedra, D., Mukherjee, M., Park, G., Park, J., Park, S.-Y., Proctor, R. H., Regev, A., Ruiz-Roldan, M. C., Sain, D., Sakthikumar, S., Sykes, S., Schwartz, D. C., Turgeon, B. G., Wapinski, I., Yoder, O., Young, S., Zeng, Q., Zhou, S., Galagan, J., Cuomol, C. A., Kistler, H. C., and Rep, M. 2010. Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium. Nature 464:367-373.
33. Manulis, S., Kogan, N., Reuven, M., and Ben-Yephet, Y. 1994. Use of the RAPD technique for identification of Fusarium oxysporum f. sp. dianthi from carnation. Phytopathology 84:98-101. (Pubitemid 2044004)
34. Mes, J. J., Haring, M. A., and Cornelissen, B. J. 2000. Foxy: An active family of short interspersed nuclear elements from Fusarium oxysporum. Mol. Gen. Genet. 263:271-280.
35. Pasquali, M., Dematheis, F., Gullino, M. L., and Garibaldi, A. 2007. Identification of Race 1 of Fusarium oxysporum f. sp. lactucae on lettuce by inter-retrotransposon sequence-characterized amplification region technique. Phytopathology 97:987-996. (Pubitemid 47235630)
36. Pasquali, M., Marena, L., Fiori, R., Piatti, P., Gullino, M. L., and Garibaldi, A. 2004. Real-time polymerase chain reaction for identification of a highly pathogenic group of Fusarium oxysporum f. sp. chrysanthemi on Argyranthemum frutescens L. J. Plant Pathol. 86:55-61.
37. Puhalla, J. E. 1985. Classification of strains of Fusarium oxysporum on the basis of vegetative compatibility. Can. J. Bot. 63:179-183.
38. Roncero, M. I. G., Hera, C., Ruiz-Rubio, M., Maceira, G., Madrid, M. P., Caracuel, Z., Calero, F., Delgado-Jarana, J., Roldán-Rodríguez, R., Martéynez-Rocha, A. L., Velasco, C., Roa, J., Martín-Urdiroz, M., Cordoba, D., and Di Pietro, A. 2002. Fusarium as a model for studying virulence in soilborne plant pathogens. Physiol. Mol. Plant Pathol. 62:87-98.
39. Sambrook, J., Firtsch, E. F., and Maniatis, T. 1989. Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
40. Southwood, M. J. 2010. Evolution and detection of Fusarium oxysporum f. sp. cepae in onion. Ph.D. thesis, Stellenbosch University, South Africa.
41. Swift, C. E., Wickliffe, E. R., and Schwartz, H. F. 2002. Vegetative compatibility groups of Fusarium oxysporum f. sp. cepae from onion in Colorado. Plant Dis. 86:606-610. (Pubitemid 34548723)
42. Vakalounakis, D. J., Doulis, A. G., and Klironomou, E. 2005. Characterization of Fusarium oxysporum f. sp. radicis-cucumerinum attacking melon under natural conditions in Greece. Plant Pathol. 54:339-346. (Pubitemid 40802043)
43. Vakalounakis, D. J., Wang, Z., Fragkiadakis, G. A., Skaracis, G. N., and Li, D.-B. 2004. Characterization of Fusarium oxysporum isolates obtained from cucumber in China by pathogenicity, VCG, and RAPD. Plant Dis. 88:645-649. (Pubitemid 38642225)
44. Van der Does, H., Lievens, B., Claes, L., Houterman, P. M., Cornelissen, B. J. C., and Rep, M. 2008. The presence of virulence locus discriminates Fusarium oxysporum isolates causing tomato wilt from other isolates. Environ. Microbiol. 10:1475-1485. (Pubitemid 351670247)
45. Yoo, S. J., Watanabe, H., Kobayashi, K., Ogoshi, A., and Kodama, F. 1993. Vegetative compatibility grouping of formae speciales of Fusarium oxysporum pathogenic to the Liliaceae. Ann. Phytopathol. Soc. Jpn. 59:3-9.
46. Zambounis, A. G., Paplomatas, E., and Tsaftaris, A. S. 2007. Intergenic spacer-RFLP analysis and direct quantification of Australian Fusarium oxysporum f. sp. vasinfectum isolates from soil and infected cotton tissue. Plant Dis. 91:1564-1573. (Pubitemid 350156975)