The application of high-throughput AFLP's in assessing genetic diversity in Fusarium oxysporum f. sp. cubense

Mycological Research

Volumn 110, Issue 3, 2006, Pages 297-305

  Groenewald, Susan ^a   Van Den Berg, Noëlani ^a   Marasas, Walter F O ^b   Viljoen, Altus ^a  

^a UNIVERSITY OF PRETORIA   (South Africa)

^b SOUTH AFRICAN MEDICAL RESEARCH COUNCIL   (South Africa)

Author keywords

Fusarium wilt; Plant pathology; Population diversity; Vegetative compatibility

Indexed keywords

DNA; FRUIT; FUNGAL DISEASE; GENETIC VARIATION; GENOTYPE; PATHOGENICITY; POPULATION GENETICS;

FUSARIUM; FUSARIUM OXYSPORUM; FUSARIUM OXYSPORUM F. CUBENSE; FUSARIUM OXYSPORUM F. SP. DIANTHI;

FUNGAL DNA;

ARTICLE; CLASSIFICATION; DNA FINGERPRINTING; FUSARIUM; GENETIC VARIABILITY; GENETICS; PHYLOGENY; POLYMERASE CHAIN REACTION; RESTRICTION FRAGMENT LENGTH POLYMORPHISM;

DNA FINGERPRINTING; DNA, FUNGAL; FUSARIUM; PHYLOGENY; POLYMERASE CHAIN REACTION; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; VARIATION (GENETICS);

EID: 33646463036     PISSN: 09537562     EISSN: 14698102     Source Type: Journal    
DOI: 10.1016/j.mycres.2005.10.004     Document Type: Article

References (55)

1. Abd-Elsalam K.A., Khalil M.S., Aly A.A., and Asran-Amal A. Genetic diversity among Fusarium oxysporum f. sp. vasinfectum isolates revealed by UP-PCR and AFLP markers. Phytopathologia Mediterranea 41 (2002) 1-7
2. Abd-Elsalam K.A., Khalil M.S., Aly A.A., and Asran-Amal A. Population analysis of Fusarium spp. Phytomedizin 3 (2002) 18-19
3. Abdel-Satar M.A., Khalil M.S., Mohmed I.N., Abd-Elsalam K.A., and Verreet J.A. Molecular phylogeny of Fusarium species by AFLP fingerprint. African Journal of Biotechnology 2 (2003) 51-55
4. Anderson J.B., and Kohn L.M. Clonality in soilborne plant-pathogenic fungi. Annual Review of Phytopathology 33 (1995) 369-391
5. Baayen R.P., O'Donnell K., Bonants P.J., Cigelnik E., Kroon L.P.N.M., Roebroeck E.J.A., and Waalwijk C. Gene genealogies and AFLP analysis in Fusarium oxysporum complex identify monophyletic and nonmonophyletic formae speciales causing wilt and rot disease. Phytopathology 90 (2000) 891-900
6. Bentley S, Moore NY, Pegg KG, Gerlach KS, Smith LJ, 1999. Genetic characterisation and detection of fusarium wilt. In Banana fusarium wilt Management: Towards Sustainable Cultivation. Proceedings of the International Workshop on the Banana fusarium wilt Disease Held at Genting Highlands Resort, Malaysia. (AB Molina, NHN Masdek, KW Liew, eds): 143-151. Inibap, Montpelier, France.
7. Bentley S., Pegg K.G., and Dale J.L. Genetic variation among a worldwide collection of isolates of Fusarium oxysporum f. sp. cubense analysed by RAPD-PCR fingerprinting. Mycological Research 99 (1995) 1378-1384
8. Bentley S., Pegg K.G., Moore N.Y., Davis R.D., and Buddenhagen I.W. Genetic variation among vegetative compatibility groups of Fusarium oxysporum f. sp. cubense analysed by DNA fingerprinting. Phytopathology 88 (1998) 1283-1288
9. Boehm E.W.A., Ploetz R.C., and Kistler H.C. Statistical analysis of electrophoretic karyotype variation among vegetative compatibility groups of Fusarium oxysporum f. sp. cubense. Molecular Plant-Microbe Interactions 7 (1994) 196-207
10. Bosland P.W., and Williams P.H. An evaluation of Fusarium oxysporum from crucifers based on pathogenicity, isozyme polymorphism, vegetative compatibility, and geographic origin. Canadian Journal of Botany 65 (1986) 2067-2073
11. Brake V.M., Pegg K.G., Irwin J.A.G., and Langdon P.W. Vegetative compatibility groups within Australian populations of Fusarium oxysporum f. sp. cubense, the cause of fusarium wilt of bananas. Australian Journal of Agricultural Research 41 (1990) 863-870
12. Brandes E.W. Banana wilt. Phytopathology 9 (1919) 339-389
13. Correll J.C. The relationship between formae speciales, races, and vegetative compatibility groups in Fusarium oxysporum. Phytopathology 81 (1991) 1061-1064
14. DeScenzo R.A., Engel S.R., Gomez G., Jackson E.L., Munkvold G.P., Weller J., and Irelan N.A. Genetic analysis of Eutypa strains from California supports the presence of two pathogenic species. Phytopathology 89 (1999) 884-893
15. Felsenstein J. Confidence intervals of phylogenetics: an approach using bootstrap. Evolution 39 (1985) 783-791
16. Gerlach K.S., Bentley S., Moore N.Y., Pegg K.G., and Aitken A.B. Characterisation of Australian isolates of Fusarium oxysporum f. sp. cubense by DNA fingerprinting analysis. Australian Journal of Agricultural Research 51 (2000) 945-953
17. Gonzalez M., Rodriguez M.E.Z., Jacabo J.L., Hernandez F., Acosta J., Martinez O., and Simpson J. Characterization of Mexican isolates of Colletotrichum lindemuthianum by using differential cultivars and molecular markers. Phytopathology 88 (1998) 292-299
18. Hwang S.-C., and Ko W.-H. Cavendish banana cultivars resistant to fusarium wilt acquired through somaclonal variation in Taiwan. Plant Disease 88 (2004) 580-588
19. Jurgenson J.E., Zeller K.A., and Leslie J.F. Expanded genetic map of Gibberella moniliformis (Fusarium verticillioides). Applied and Environmental Microbiology 68 (2002) 1972-1979
20. Kiprop E.K., Baudoin J.P., Mwang'ombe A.N., Kimani P.M., Mergeai G., and Maquet A. Characterization of Kenyan isolates of Fusarium udum from pigeonpea [Cajanus cajan (L.) Millsp.] by cultural characteristics, aggressiveness and AFLP analysis. Journal of Phytopathology 150 (2002) 517-527
21. Kistler H.C. Evolution in host specificity in Fusarium oxysporum. In: Summerell B.A., Leslie J.F., Backhouse D., Bryden W.L., and Burgess L.W. (Eds). Fusariusm: Paul E. Nelson Memorial Symposium (2001), APS Press, St. Paul, Minnesota, USA 70-82
22. Koenig R., Ploetz R.C., and Kistler H.C. Fusarium oxysporum f. sp. cubense consists of a small number of divergent and globally distributed lineages. Phytopathology 87 (1997) 915-923
23. Leslie J.F., Zeller K.A., Lamprecht S.C., Rheeder J.P., and Marasas W.F.O. Toxicity, pathogenicity, and genetic differentiation of five species of Fusarium from sorghum and millet. Phytopathology 95 (2005) 275-283
24. Majer D., Mithen R., Lewis B., Vos P., and Oliver R.P. The use of AFLP fingerprinting for the detection of genetic variation in fungi. Mycological Research 100 (1996) 1107-1111
25. Milgroom M.G. Recombination and multilocus structure of fungal populations. Annual Review of Phytopathology 34 (1996) 457-477
26. Moore N.Y., Bentley S., Pegg K.G., and Jones D.R. Fusarium wilt of banana. Musa Disease Fact Sheet No 5 (1995), Inibap, Montpellier, France
27. Moore N.Y., Pegg K.G., Allen R.N., and Irwin J.A.G. Vegetative compatibility and distribution of Fusarium oxysporum f. sp. cubense in Australia. Australian Journal of Experimental Agriculture 33 (1993) 797-802
28. Myburg A.A., Remington D.L., O'Malley D.M., Sederoff R.R., and Whetten R.W. High-throughput AFLP analysis using infrared dye-labelled primers and an automated DNA sequencer. Biotechniques 30 (2001) 348-357
29. O'Donnell K., Kistler H.C., Cigelnik E., and Ploetz R.C. Multiple evolutionary origins of the fungus causing Panama disease of banana: concordant evidence from nuclear and mitochondrial gene genealogies. Proceedings of the National Academy of Science, USA 95 (1998) 2044-2049
30. Ori N., Eshed Y., Paran I., Presting G., Aviv D., Tanksley S., Zamir D., and Fluhr R. The I2C family from the wilt disease resistant locus I2 belongs to the nucleotide binding, leucine-rich repeat superfamily of plant resistance genes. The Plant Cell 9 (1997) 521-532
31. Pegg K.G., Moore N.Y., and Bentley S. Fusarium wilt of banana in Australia. Australian Journal of Agricultural Research 47 (1996) 637-650
32. Pegg K.G., Moore N.Y., and Sorenson S. Fusarium wilt in the Asian Pacific region. In: Valmayor R.V., Hwang S.C., Ploetz R.C., Lee S.W., and Roa V.N. (Eds). International Symposium on Recent Developments in Banana Cultivation Technology Held at Chiuju, Pintung, Taiwan (1993) 255-314 Proceedings TBRI ASPNET and INIBAP
33. Pegg K.G., Moore N.Y., and Sorenson S. Variability in populations of Fusarium oxysporum f. sp. cubense from the Asia/Pacific region. In: Jones D.R. (Ed). The Improvement and Testing of Musa: A Global Partnership. Proceeding of the First Global Conference of the International Musa Testing Program Held at FHIA, Honduras (1994), INIBAP, Montpellier, France 70-82
34. Ploetz R.C. Population biology of Fusarium oxysporum f. sp. cubense. In: Ploetz R.C. (Ed). Fusarium Wilt of Banana (1990), APS Press, St. Paul, Minnesota, USA 63-76
35. Ploetz R.C. Fusarium wilt (Panama disease) in Africa: current status and outlook for smallholder agriculture. In: Gold C.S., and Gemmill B. (Eds). Biological and Integrated Control of Highland Banana and Plantain Pests and Diseases (1993), IITA, Ibadan, Nigeria 312-323
36. Ploetz R.C. Panama disease: return of the first banana menace. International Journal of Pest Management 40 (1994) 326-336
37. Ploetz R.C., and Correll J.C. Vegetative compatibility among races of Fusarium oxysporum f. sp. cubense. Plant Disease 72 (1988) 325-328
38. Ploetz R.C., Herbert J., Sebasigari K., Hernandez J.H., Pegg K.G., Ventura J.A., and Mayato L.S. Importance of fusarium wilt in different banana growing regions. In: Ploetz R.C. (Ed). Fusarium Wilt of Banana (1990), APS Press, St. Paul, Minnesota, USA 9-26
39. Puhalla J.C. Classification of strains of Fusarium oxysporum on the basis of vegetative compatibility. Canadian Journal of Botany 63 (1985) 179-183
40. Purwantara A., Barrins J.M., Cozijnsen A.J., Ades P.K., and Howlet B.J. Genetic diversity of the Leptosphaeria maculans species complex from Australia, Europe and North America using amplified fragment length polymorphism analysis. Mycological Research 104 (2000) 772-781
41. Reader U., and Broda P. Rapid preparation of DNA from filamentous fungi. Letters in Applied Microbiology 1 (1985) 17-20
42. Sambrook J., Fritsch E.F., and Maniatis T. Molecular Cloning: A Laboratory Manual (1989), Cold Spring Harbour Laboratory Press, Cold Spring Harbour, New York pp. E.3-E.4
43. Sivaramakrishan S., Kannan S., and Singh S.D. Genetic variability of fusarium wilt pathogen isolates of chickpea (Cicer arietinum L.) assessed by molecular markers. Mycopathologia 155 (2002) 171-178
44. Spooner D.M., Tivang J., Nienhuis J., Miller J.T., Douches D.S., and Contreras M.A. Comparison of four molecular markers in measuring relationships among wild potato relatives Solanum section Etuberosum (subgenus Potatoe). Theoretical and Applied Genetics 92 (1996) 532-540
45. Stover R.H. Studies on fusarium wilt of bananas. IV. Clonal differentiation among wild type isolates of Fusarium oxysporum f. sp. cubense. Canadian Journal of Botany 37 (1959) 245-255
46. Stover R.H. Fusarial wilt (Panama disease) of bananas and other Musa species. Banana, Plantain and Abaca Diseases (1962), Commonwealth Mycological Institute, Kew, Surrey, England 167-188
47. Stover R.H., and Buddenhagen I.W. Banana breeding: polyploidy, disease resistance and productivity. Fruits 41 (1986) 175-191
48. Stover R.H., and Simmonds N.W. Bananas. 3rd edn (1987), Longmans, London
49. Su H.J., Hwang S.C., and Ko W.H. Fusarial wilt of Cavendish bananas in Taiwan. Plant Disease 70 (1986) 814-818
50. *and Other Methods) (1999), Sinauer Associates, Sunderland, Massachusetts Version 4
51. Vakili N.G. Fusarium wilt resistance in seedlings and mature plants of Musa species. Phytopathology 55 (1965) 135-140
52. Visser M, 2003. Molecular Biological Studies of the fusarium wilt Pathogen of Banana of South Africa. Ph.D. Thesis University of Pretoria, South Africa: Chapter 6. Genetic structure in a global population of Fusarium oxysporum f. sp. cubense.
53. Vos P., Hogers R., Bleeker M., Reijans M., van de Lee T., Hornes M., Frijters A., Pot J., Peleman J., Kuiper M., and Zabeau M. AFLP: a new technique for DNA fingerprinting. Nucleic Acids Research 23 (1995) 4407-4414
54. Waite B.H., and Stover R.H. Studies on fusarium wilt of bananas, VI. Variability and cultivar concept in Fusarium oxysporum f. cubense. Canadian Journal of Botany 38 (1960) 985-994
55. Zeller K.A., Jurgenson J.E., El-Assiuty E.M., and Leslie J.F. Isozyme and amplified fragment length polymorphisms (AFLPs) from Cephalosporium maydis in Egypt. Phytoparasitica 28 (2000) 121-130