-
1
-
-
34147179079
-
BRLMM: an improved genotype calling method for the GeneChip Human Mapping 500K Array Set
-
AFFYMETRIX, Santa Clara, CA: Affymetrix, Inc
-
AFFYMETRIX (2006) BRLMM: an improved genotype calling method for the GeneChip Human Mapping 500K Array Set. Technical Report, White Paper. Santa Clara, CA: Affymetrix, Inc.
-
(2006)
Technical Report, White Paper
-
-
-
2
-
-
71149112981
-
Simultaneous genotype calling and haplotype phasing improves genotype accuracy and reduces false-positive associations for genomewide association studies
-
Browning, B.L and Yu, Z.X (2009) Simultaneous genotype calling and haplotype phasing improves genotype accuracy and reduces false-positive associations for genomewide association studies. Am. J. Hum. Genet., 85, 847-861.
-
(2009)
Am. J. Hum. Genet.
, vol.85
, pp. 847-861
-
-
Browning, B.L.1
Yu, Z.X.2
-
3
-
-
34147136617
-
Exploration, normalization, and genotype calls of high-density oligonucleotide SNP array data
-
Carvalho, B. et al. (2007) Exploration, normalization, and genotype calls of high-density oligonucleotide SNP array data. Biostatistics., 8, 485-499.
-
(2007)
Biostatistics.
, vol.8
, pp. 485-499
-
-
Carvalho, B.1
-
4
-
-
77955168118
-
An interactive effect of batch size and composition contributes to discordant results inGWAS with the CHIAMO genotyping algorithm
-
Chierici, M. et al. (2010) An interactive effect of batch size and composition contributes to discordant results inGWAS with the CHIAMO genotyping algorithm, Pharmacogenomics J., 10, 355-363.
-
(2010)
Pharmacogenomics J.
, vol.10
, pp. 355-363
-
-
Chierici, M.1
-
5
-
-
52949089727
-
GenoSNP: a variational Bayes within-sample SNP genotyping algorithm that does not require a reference population
-
Giannoulatou, E. et al. (2008) GenoSNP: a variational Bayes within-sample SNP genotyping algorithm that does not require a reference population, Bioinformatics, 24, 2209-2214.
-
(2008)
Bioinformatics
, vol.24
, pp. 2209-2214
-
-
Giannoulatou, E.1
-
6
-
-
84863047500
-
Illumina GenCall Data Analysis Software
-
Illumina Inc
-
Illumina Inc. (2005) Illumina GenCall Data Analysis Software. TECHNOLOGY SPOTLIGHT. http://www.illumina.com/Documents/products/technotes/technote_gencall_data_analysis_software.pdf
-
(2005)
TECHNOLOGY SPOTLIGHT
-
-
-
7
-
-
85043064238
-
Improved Cluster Generation with Gentrain2
-
Illumina Inc
-
Illumina Inc. (2009) Improved Cluster Generation with Gentrain2. Technical Note: DNA Analysis. http://www.illumina.com/Documents/products%5Ctechnotes%5Ctechnote_gentrain2.pdf
-
(2009)
Technical Note: DNA Analysis
-
-
-
8
-
-
20244380171
-
Complement factor H polymorphism in age-related macular degeneration
-
Klein, R.J. et al. (2005) Complement factor H polymorphism in age-related macular degeneration. Science, 308, 385-389.
-
(2005)
Science
, vol.308
, pp. 385-389
-
-
Klein, R.J.1
-
9
-
-
34347344976
-
Anew multipoint method for genome-wide association studies by imputation of genotypes
-
Marchini, J. et al. (2007)Anew multipoint method for genome-wide association studies by imputation of genotypes. Nat. Genet., 39, 906-913.
-
(2007)
Nat. Genet.
, vol.39
, pp. 906-913
-
-
Marchini, J.1
-
10
-
-
2942626614
-
-
MATLAB
-
MATLAB (R2009a) MathWorks. Inc. http://www.mathworks.com/help/techdoc/rn/bro2uzv.html
-
(2009)
MathWorks. Inc
-
-
-
11
-
-
0004066260
-
-
Wiley Series in Probability and Statistics, John Wiley, New York
-
McLachlan, G.J. and Peel, D. (2000) Finite Mixture Models. Wiley Series in Probability and Statistics, John Wiley, New York.
-
(2000)
Finite Mixture Models
-
-
McLachlan, G.J.1
Peel, D.2
-
12
-
-
60949104387
-
Computing Issues for the EM Algorithm in Mixture Models
-
Fairfax Station, Virginia: Interface Foundation of North America
-
McLachlan, G.J and Peel, D. (1999) Computing Issues for the EM Algorithm in Mixture Models. In Computing Science and Statistics, vol. 30. Fairfax Station, Virginia: Interface Foundation of North America, pp. 421-430.
-
(1999)
Computing Science and Statistics
, vol.30
, pp. 421-430
-
-
McLachlan, G.J.1
Peel, D.2
-
13
-
-
78049497235
-
Mahalanobis distance
-
McLachlan, G.J. (1999) Mahalanobis distance. Resonance, 4, 20-26.
-
(1999)
Resonance
, vol.4
, pp. 20-26
-
-
McLachlan, G.J.1
-
14
-
-
30344454706
-
A genotype calling algorithm for Affymetrix SNP arrays
-
Rabbee, N and Speed, T.P. (2005) A genotype calling algorithm for Affymetrix SNP arrays. Bioinformatics, 22, 7-12.
-
(2005)
Bioinformatics
, vol.22
, pp. 7-12
-
-
Rabbee, N.1
Speed, T.P.2
-
15
-
-
70349874808
-
R/Bioconductor software for Illumina's Infinium whole-genome genotyping BeadChips
-
Ritchie, M.E. et al. (2009) R/Bioconductor software for Illumina's Infinium whole-genome genotyping BeadChips. Bioinformatics, 25, 2621-2623.
-
(2009)
Bioinformatics
, vol.25
, pp. 2621-2623
-
-
Ritchie, M.E.1
-
16
-
-
79952330384
-
Comparing genotyping algorithms for Illumina's Infinium whole-genome SNP BeadChips
-
Ritchie, M.E. et al. (2011) Comparing genotyping algorithms for Illumina's Infinium whole-genome SNP BeadChips. BMC Bioinformatics, 12, 68.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 68
-
-
Ritchie, M.E.1
-
17
-
-
33847176604
-
A genomewide association study identifies novel risk loci for type 2 diabetes
-
Sladek, R. et al. (2007) A genomewide association study identifies novel risk loci for type 2 diabetes. Nature, 445, 881-885.
-
(2007)
Nature
, vol.445
, pp. 881-885
-
-
Sladek, R.1
-
18
-
-
31344476038
-
Whole-genome genotyping with the single-base extension assay
-
Steemers, F.J. et al. (2006) Whole-genome genotyping with the single-base extension assay. Nat. Methods, 3, 31-33.
-
(2006)
Nat. Methods
, vol.3
, pp. 31-33
-
-
Steemers, F.J.1
-
19
-
-
35748941336
-
A genotype calling algorithm for the Illumina BeadArray platform
-
Teo, Y. et al. (2007) A genotype calling algorithm for the Illumina BeadArray platform. Bioinformatics, 23, 2741-2746.
-
(2007)
Bioinformatics
, vol.23
, pp. 2741-2746
-
-
Teo, Y.1
-
20
-
-
35348983887
-
A second generation human haplotype map of over 3.1 million SNPs
-
The International HapMap Consortium
-
The International HapMap Consortium (2007) A second generation human haplotype map of over 3.1 million SNPs. Nature, 449, 851-861.
-
(2007)
Nature
, vol.449
, pp. 851-861
-
-
-
21
-
-
84969213492
-
Genome-wide association study of 14 000 cases of seven common diseases and 3000 shared controls
-
The Wellcome Trust Case Control Consortium
-
The Wellcome Trust Case Control Consortium (2007) Genome-wide association study of 14 000 cases of seven common diseases and 3000 shared controls. Nature, 447, 661-678.
-
(2007)
Nature
, vol.447
, pp. 661-678
-
-
-
22
-
-
77955123718
-
Assessment of variability in GWAS with CRLMM genotyping algorithm on WTCCC coronary artery disease
-
Zhang, L. et al. (2010) Assessment of variability in GWAS with CRLMM genotyping algorithm on WTCCC coronary artery disease. Pharmacogenomics J., 10, 347-354.
-
(2010)
Pharmacogenomics J.
, vol.10
, pp. 347-354
-
-
Zhang, L.1
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