Novel modular endo-β-1,4-xylanase with transglycosylation activity from Cellulosimicrobium sp. strain HY-13 that is homologous to inverting GH family 6 enzymes

Bioresource Technology

Volumn 107, Issue , 2012, Pages 25-32

  Kim, Do Young ^a   Ham, Su Jin ^a   Kim, Hyo Jeong ^a   Kim, Jihoon ^a   Lee, Mi Hwa ^a   Cho, Han Young ^a   Shin, Dong Ha ^b   Rhee, Young Ha ^c   Son, Kwang Hee ^a   Park, Ho Yong ^a  

^a Korea Research Institute of Bioscience and Biotechnology (KRIBB)   (South Korea)

^b Hanson Biotech Co Ltd   (South Korea)

^c Chungnam National University   (South Korea)

Author keywords

Cellulosimicrobium sp. strain HY 13; Eisenia fetida; Endo 1,4 xylanase; Gut bacterium; Transglycosylation activity

Indexed keywords

CARBOHYDRATE-BINDING MODULES; CATALYTIC DOMAINS; CELLOBIOSIDE; CELLULOMONAS FLAVIGENA; CELLULOSIMICROBIUM SP. STRAIN HY-13; EISENIA FETIDA; GUT BACTERIA; N-TERMINALS; SYMBIOTIC BACTERIA; TRANS GLYCOSYLATION ACTIVITY; XYLANOLYTIC ENZYMES; XYLOBIOSES;

BACTERIA; CARBOHYDRATES; GENE ENCODING; GLUCOSE; GLYCOSYLATION;

ENZYME ACTIVITY;

4 NITROPHENOL; 4 NITROPHENYL CELLOBIOSIDE; BACTERIAL ENZYME; CARBOHYDRATE BINDING MOLECULE 2; CARBOHYDRATE BINDING PROTEIN; CARBOHYDRATE DERIVATIVE; CELLOBIOSE; ENDO 1,4 BETA XYLANASE; FIBRONECTIN; FIBRONECTIN TYPE 3; GH 6 ENZYME; GLUCOSE; TRANSFERASE; UNCLASSIFIED DRUG; XYLAN ENDO 1,3 BETA XYLOSIDASE; XYLOBIOSE; XYLOTRIOSE;

BACTERIUM; CATALYSIS; DIGESTIVE SYSTEM; EARTHWORM; ENZYME ACTIVITY; GENE EXPRESSION; HOMOLOGY; HYDROLYSIS; MOLECULAR ANALYSIS;

ACTINOMYCETALES; AMINO TERMINAL SEQUENCE; ARTICLE; BACTERIAL STRAIN; CARBOXY TERMINAL SEQUENCE; CATALYSIS; CELLULOMONAS; CELLULOMONAS FLAVIGENA; CELLULOSIMICROBIUM; CONTROLLED STUDY; ENZYME ACTIVITY; ENZYME DEGRADATION; ENZYME SPECIFICITY; ENZYME SYNTHESIS; GLYCOSYLATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN HYDROLYSIS;

AMINO ACID SEQUENCE; BASE SEQUENCE; CARBOHYDRATE METABOLISM; DNA PRIMERS; ELECTROPHORESIS, POLYACRYLAMIDE GEL; ENDO-1,4-BETA XYLANASES; GLYCOSYLATION; GRAM-NEGATIVE BACTERIA; MOLECULAR SEQUENCE DATA; PHYLOGENY; POLYMERASE CHAIN REACTION; RECOMBINANT PROTEINS; SEQUENCE HOMOLOGY, AMINO ACID;

BACTERIA (MICROORGANISMS); CELLULOMONAS FLAVIGENA; CELLULOSIMICROBIUM; EISENIA FETIDA;

EID: 84856572622     PISSN: 09608524     EISSN: 18732976     Source Type: Journal    
DOI: 10.1016/j.biortech.2011.12.106     Document Type: Article

References (37)

1. Ali M.K., Rudolph F.B., Bennett G.N. Characterization of thermostable Xyn10A enzyme from mesophilic Clostridium acetobutylicum ATCC 824. J. Ind. Microbiol. Biotechnol. 2005, 32:12-18.
2. Bachmann S.L., McCarthy A.J. Purification and cooperative activity of enzymes constituting the xylan-degrading system of Thermomonospora fusca. Appl. Environ. Microbiol. 1991, 57:2121-2130.
3. Benech R.-O., Li X., Patton D., Powlowski J., Storms R., Bourbonnais R., Paoce M., Tsang A. Recombinant expression, characterization, and pulp prebleaching property of a Phanerochate chrysosporium endo-β-1, 4-mannanase. Enzyme Microb. Tech. 2007, 41:740-747.
4. Black G.W., Hazlewood G.P., Millward-Sadler S.J., Laurie J.I., Gilbert H.J. A modular xylanase containing a novel non-catalytic xylan-specific binding domain. Biochem. J. 1995, 307:191-195.
5. Bradford M.M. A rapid and sensitive method for the quantitation of microorganism quantities of protein utilizing the principle of protein-dye binding. Anal. Biochem. 1976, 72:248-254.
6. Byzov B.A., Nechitaylo T.Y., Bumazhkin B.K., Kurakov A.V., Golyshin P.N., Zvyagintsev D.G. Culturable microorganisms from the earthworm digestive tract. Microbiology 2009, 78:360-368.
7. Collins T., Gerday C., Feller G. Xylanases, xylanase families and extremophilic xylanases. FEMS Microbiol. Rev. 2005, 29:3-23.
8. Denman S., Xue G.-P., Patel B. Characterization of a Neocallimastix patriciarum cellulase cDNA (celA) homologous to Trichoderma reesei cellobiohydrolase II. Appl. Environ. Microbiol. 1996, 62:1889-1896.
9. Gallardo O., Diaz P., Pastor F.I.J. Characterization of a Paenibacillus cell-associated xylanase with high activity on aryl-xylosides: a new subclass of family 10 xylanases. Appl. Microbiol. Biotechnol. 2003, 61:226-233.
10. Gilkes N.R., Henrissat B., Kilburn D.G., Miller R.C., Warren R.A.J. Domains in microbial β-1, 4-glycanases: sequence conservation, function, and enzyme families. Microbiol. Rev. 1991, 55:303-315.
11. Gruno M., Valjamae P., Pettersson G., Johanssen G. Inhibition of the Trichoderma reesei cellulases by cellobiose is strongly dependent on the nature of the substrate. Biotechnol. Bioeng. 2004, 86:503-511.
12. Harjunpää V., Helin J., Koivula A., Siika-aho M., Drakenberg T. A comparative study of two retaining enzymes of Trichoderma reesei: transglycosylation of oligosaccharides catalyzed by the cellobiohydrolase I, Cel7A, and the β-mannanase, Man5A. FEBS Lett. 1999, 443:149-153.
13. Jommuengbout P., Pinitglang S., Kyu K.L., Ratanakhanokchai K. Substrate-binding site of family 11 xylanase from Bacillus firmus K-1 by molecular docking. Biosci. Biotechnol. Biochem. 2009, 73:833-839.
14. Kim D.Y., Han M.K., Lee J.S., Oh H.-W., Park D.-S., Shin D.-H., Son K.-H., Bae K.S., Park H.-Y. Isolation and characterization of a cellulase-free endo-β-1, 4-xylanase produced by an invertebrate-symbiotic bacterium, Cellulosimicrobium sp. HY-13. Process. Biochem. 2009, 44:1055-1059.
15. Kim D.Y., Han M.K., Park D.-S., Lee J.S., Oh H.-W., Shin D.-H., Jeong T.-S., Kim S.U., Bae K.S., Son K.-H., Park H.-Y. Novel GH10 xylanase, with a fibronectin type 3 domain, from Cellulosimicrobium sp. strain HY-13, a bacterium in the gut of Eisenia fetida. Appl. Environ. Microbiol. 2009, 75:7275-7279.
16. Kim D.Y., Han M.K., Oh H.-W., Park D.-S., Kim S.-J., Lee S.-G., Shin D.-H., Son K.-H., Bae K.S., Park H.-Y. Catalytic properties of a GH10 endo-β-1, 4-xylanase from Streptomyces thermocarboxydus HY-15 isolated from the gut of Eisenia fetida. J. Mol. Catal. B: Enzym. 2010, 62:32-39.
17. Kim D.Y., Han M.K., Oh H.-W., Bae K.S., Jeong T.-S., Kim S.U., Shin D.-H., Kim I.-H., Rhee Y.H., Son K.-H., Park H.-Y. Novel intracellular GH10 xylanase from Cohnella laeviribosi HY-21: biocatalytic properties and alterations of substrate specificities by site-directed mutagenesis of Trp residues. Bioresour. Technol. 2010, 101:8814-8821.
18. Kim D.Y., Ham S.-J., Lee H.J., Kim Y.-J., Shin D.-H., Rhee Y.H., Son K.-H., Park H.-Y. A highly active endo-β-1, 4-mannanase produced by Cellulosimicrobium sp. strain HY-13, a hemicellulolytic bacterium in the gut of Eisenia fetida. Enzyme Microb. Technol. 2011, 48:365-370.
19. Kim D.Y., Ham S.-J., Lee H.J., Cho H.-Y., Kim J.-H., Kim Y.-J., Shin D.-H., Rhee Y.H., Son K.-H., Park H.-Y. Cloning and characterization of a modular GH5 β-1, 4-mannanase with high specific activity from the fibrolytic gut bacterium Cellulosimicrobium sp. strain HY-13. Bioresour. Technol. 2011, 102:9185-9192.
20. Kitaoka M. Glycosynthases from inverting hydrolases. Biocatalysis and Biomolecular Engineering 2010, 361-374. John Wiley & Sons, Inc., Hoboken, NJ. C.T. Hou, J.-F. Shaw (Eds.).
21. Kulkarni N., Shendye A., Rao M. Molecular and biotechnological aspects of xylanases. FEMS Microbiol. Rev. 1999, 23:411-456.
22. Lahjouji K., Storms R., Xiao Z., Joung K., Zheng J., Powlowski J., Tsang A., Varin L. Biochemical and molecular characterization of a cellobiohydrolase from Trametes versicolar. Appl. Microbiol. Biotechnol. 2007, 75:337-346.
23. Li N., Meng K., Wang Y., Shi P., Luo H., Bai Y., Yang P., Yao B. Cloning, expression, and characterization of a new xylanase with broad temperature adaptability from Streptomyces sp. S9. Appl. Microbiol. Biotechnol. 2008, 80:231-240.
24. Luo H., Yang J., Li J., Shi P., Huang H., Bai Y., Fan Y., Yao B. Molecular cloning and characterization of the novel acidic xylanase XYLD from Bispora sp. MEY-1 that is homologous to family 30 glycosyl hydrolases. Appl. Microbiol. Biotechnol. 2010, 86:1829-1839.
25. Mamo G., Hatti-Kaul R., Mattiasson B. A thermostable alkaline active endo-β-1, 4-xylanase from Bacillus halodurans S7: purification and characterization. Enzyme Microb. Technol. 2006, 39:1492-1498.
26. McKie V.A., Vincken J.-P., Voragen A.G.J., van den Broek L.A.M., Stimson E., Gilbert H.J. A new family of rhamnogalacturonan lyases contains an enzyme that binds to cellulose. Biochem. J. 2001, 355:167-177.
27. Meinke A., Gilkes N.R., Kwan E., Kilburn D.G., Warren R.A.J., Miller R.C. Cellobiohydrolase A (CbhA) from the cellulolytic bacterium Cellulomonas fimi is a β-1, 4-exocellobiohydrolase analogous to Trichoderma reesei CBH II. Mol. Microbiol. 1994, 12:413-422.
28. Mertz B., Kuczenski R.S., Larsen R.T., Hill A.D., Reilly P.J. Phylogenetic analysis of family 6 glycoside hydrolases. Biopolymers 2005, 79:197-206.
29. Miller G.L. Use of dinitrosalicylic acid reagent for determination of reducing sugar. Anal. Chem. 1959, 31:426-428.
30. Oh H.-W., Heo S.-Y., Kim D.Y., Park D.-S., Bae K.S., Park H.-Y. Biochemical characterization and sequence analysis of a xylanase produced by an exo-symbiotic bacterium of Gryllotalpa orientalis, Cellulosimicrobium sp. HY-12. Anton. van Leew. 2008, 93:437-442.
31. Shallom D., Shoham Y. Microbial hemicellulases. Curr. Opin. Microbiol. 2003, 6:219-228.
32. Shoseyov O., Shani Z., Levy I. Carbohydrate binding modules: biochemical properties and novel applications. Microbiol. Mol. Biol. Rev. 2006, 70:283-295.
33. Takahashi M., Takahashi H., Nakano Y., Konishi T., Terauchi R., Takeda T. Characterization of a cellobiohydrolase (MoCel6A) produced by Magnaporthe oryzae. Appl. Environ. Microbiol. 2010, 76:6583-6590.
34. Wang G., Luo H., Wang Y., Huang H., hi P., Yang P., Meng K., Bai Y., Yao B. A novel cold-active xylanase gene from the environmental DNA of goat rumen contents: direct cloning, expression and enzyme characterization. Bioresour. Technol. 2011, 102:3330-3336.
35. Warnecke F., Luginbühl P., Ivanova N., Ghassemian M., Richardson T.H., Stege J.T., Cayouette M., McHardy A.C., Djordjevic G., Aboushadi N., Sorek R., Tringe S.G., Podar M., Martin H.G., Kunin V., Dalevi D., Madejska J., Kirton E., Platt D., Szeto E., Salamov A., Barry K., Mikhailova N., Kyrpides N.C., Matson E.G., Ottesen E.A., Zhang X., Hernández M., Murillo C., Acosta L.G., Rigoutsos I., Tamayo G., Green B.D., Chang C., Rubin E.M., Mathur E.J., Robertson D.E., Hugenholtz P., Leadbetter J.R. Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite. Nature 2007, 450:560-565.
36. Yeoman C.J., Han Y., Dodd D., Schroeder C.M., Mackie R.I., Cann I.K.O. Thermostable enzymes as biocatalysts in the biofuel industry. Adv. Appl. Microbiol. 2010, 70:1-55.
37. Zhou J., Huang H., Meng K., Shi P., Wang Y., Luo H., Yang P., Bai Y., Zhou Z., Yao B. Molecular cloning and biochemical characterization of a novel xylanase from the symbiotic Sphingobacterium sp. TN19. Appl. Microbiol. Biotechnol. 2009, 85:323-333.