Input related microbial carbon dynamic of soil organic matter in particle size fractions

Soil Biology and Biochemistry

Volumn 47, Issue , 2012, Pages 209-219

  Gude, Antje ^a   Kandeler, Ellen ^b   Gleixner, Gerd ^a  

^a MAX PLANCK INSTITUTE FOR BIOGEOCHEMISTRY   (Germany)

^b UNIVERSITY OF HOHENHEIM   (Germany)

Author keywords

Carbon isotopes; Carbon use efficiency; Fungi; Gram negativebacteria; Gram positivebacteria; Mycorrhiza; PLFA

Indexed keywords

CARBON ISOTOPES; GRAM NEGATIVEBACTERIA; GRAM POSITIVEBACTERIA; MYCORRHIZA; PLFA;

BIOGEOCHEMISTRY; BIOLOGICAL MATERIALS; CARBOHYDRATES; FORESTRY; FUNGI; ISOTOPES; MICROORGANISMS; PHOSPHOLIPIDS; RECYCLING; SOILS; VEGETATION;

CARBON;

AGRICULTURAL SOIL; BACTERIUM; BIOMASS; C3 PLANT; C4 PLANT; CARBOHYDRATE; CARBON CYCLE; CARBON ISOTOPE; COMMUNITY DYNAMICS; DECOMPOSITION; DEGRADATION; ENZYME ACTIVITY; FATTY ACID; FUNGUS; LITTER; MAIZE; MICROBIAL ACTIVITY; MYCORRHIZA; NUTRIENT AVAILABILITY; NUTRIENT DYNAMICS; NUTRIENT USE EFFICIENCY; PARTICLE SIZE; SOIL CARBON; SOIL MICROORGANISM; SOIL ORGANIC MATTER; TURNOVER; VEGETATION DYNAMICS;

ARBUSCULAR; FUNGI; NEGIBACTERIA; POSIBACTERIA; ZEA MAYS;

EID: 84856282552     PISSN: 00380717     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.soilbio.2012.01.003     Document Type: Article

References (71)

1. Amelung W., Brodowski S., Sandhage-Hofmann A., Bol R. Combining biomarker with stable isotope analyses for assessing the transformation and turnover of soil organic matter. Advances in Agronomy 2008, 100(100):155-250.
2. Bååth E. Thymidine and leucine incorporation in soil bacteria with different cell-size. Microbial Ecology 1994, 27:267-278.
3. Bach L.H., Frostegård å., Ohlson M. Variation in soil microbial communities across a boreal spruce forest landscape. Canadian Journal of Forest Research - Revue Canadienne De Recherche Forestiere 2008, 38:1504-1516.
4. 13C natural abundance. Mass Spectrometry of Soils 1996, 83-111. Marcel Dekker, Inc., New York. T.W. Boutton, S. Yamasaki (Eds.).
5. Bird J.A., Herman D.J., Firestone M.K. Rhizosphere priming of soil organic matter by bacterial groups in a grassland soil. Soil Biology & Biochemistry 2011, 43:718-725.
6. Bligh E.G., Dyer W.J. Arapid method of total lipid extraction and purification. Canadian Journal of Biochemistry and Physiology 1959, 37:911-917.
7. Bol R., Poirier N., Balesdent J., Gleixner G. Molecular turnover time of soil organic matter in particle-size fractions of an arable soil. Rapid Communications in Mass Spectrometry 2009, 23:2551-2558.
8. Coplen T.B., Brand W.A., Gehre M., Groning M., Meijer H.A.J., Toman B., Verkouteren R.M. After two decades a second anchor for the VPDB delta C-13 scale. Rapid Communications in Mass Spectrometry 2006, 20:3165-3166.
9. Coplen T.B., Brand W.A., Gehre M., Groning M., Meijer H.A.J., Toman B., Verkouteren R.M. New guidelines for delta C-13 measurements. Analytical Chemistry 2006, 78:2439-2441.
10. Derrien D., Marol C., Balabane M., Balesdent J. The turnover of carbohydrate carbon in a cultivated soil estimated by C-13 natural abundances. European Journal of Soil Science 2006, 57:547-557.
11. Dignac M.F., Bahri H., Rumpel C., Rasse D.P., Bardoux G., Balesdent J., Girardin C., Chenu C., Mariotti A. Carbon-13 natural abundance as a tool to study the dynamics of lignin monomers in soil: an appraisal at the Closeaux experimental field (France). Geoderma 2005, 128:3-17.
12. Flessa H., Amelung W., Helfrich M., Wiesenberg G.L.B., Gleixner G., Brodowski S., Rethemeyer J., Kramer C., Grootes P.M. Storage and stability of organic matter and fossil carbon in a Luvisol and Phaeozem with continuous maize cropping: a synthesis. Journal of Plant Nutrition and Soil Science - Zeitschrift für Pflanzenernährung und Bodenkunde 2008, 171:36-51.
13. Fontaine S., Bardoux G., Abbadie L., Mariotti A. Carbon input to soil may decrease soil carbon content. Ecology Letters 2004, 7:314-320.
14. Fontaine S., Barot S., Barre P., Bdioui N., Mary B., Rumpel C. Stability of organic carbon in deep soil layers controlled by fresh carbon supply. Nature 2007, 450. 277-U210.
15. Frostegård å., Bååth E. The use of phospholipid fatty acid analysis to estimate bacterial and fungal biomass in soil. Biology and Fertility of Soils 1996, 22:59-65.
16. Garcia-Pausas J., Paterson E. Microbial community abundance and structure are determinants of soil organic matter mineralisation in the presence of labile carbon. Soil Biology & Biochemistry 2011, 43:1705-1713.
17. Gleixner G., Bol R., Balesdent J. Molecular insight into soil carbon turnover. Rapid Communications in Mass Spectrometry 1999, 13:1278-1283.
18. Gleixner G., Czimczik C., Kramer C., Lühker B., Schmidt M. Plant compounds and their turnover and stabilization as soil organic matter. Global Biogeochemical Cycles in the Climate Systems 2001, 201-215. Academic Press. E.-D. Schulze, M. Heimann, S.P. Harrison (Eds.).
19. Gleixner G., Poirier N., Bol R., Balesdent J. Molecular dynamics of organic matter in a cultivated soil. Organic Geochemistry 2002, 33:357-366.
20. Gollner M.J., Wagentristl H., Liebhard P., Friedel J.K. Yield and arbuscular mycorrhiza of winter rye in a 40-year fertilisation trial. Agronomy for Sustainable Development 2011, 31:373-378.
21. Grandy A., Sinsabaugh R., Neff J., Stursova M., Zak D. Nitrogen deposition effects on soil organic matter chemistry are linked to variation in enzymes, ecosystems and size fractions. Biogeochemistry 2008, 91:37-49.
22. Habekost M., Eisenhauer N., Scheu S., Steinbeiss S., Weigelt A., Gleixner G. Seasonal changes in the soil microbial community in a grassland plant diversity gradient four years after establishment. Soil Biology & Biochemistry 2008, 40:2588-2595.
23. Helfrich M., Ludwig B., Potthoff M., Flessa H. Effect of litter quality and soil fungi on macroaggregate dynamics and associated partitioning of litter carbon and nitrogen. Soil Biology & Biochemistry 2008, 40:1823-1835.
24. John B., Yamashita T., Ludwig B., Flessa H. Storage of organic carbon in aggregate and density fractions of silty soils under different types of land use. Geoderma 2005, 128:63-79.
25. Kandeler E., Palli S., Stemmer M., Gerzabek M.H. Tillage changes microbial biomass and enzyme activities in particle-size fractions of a Haplic Chernozem. Soil Biology & Biochemistry 1999, 31:1253-1264.
26. Kirchmann H., Haberhauer G., Kandeler E., Sessitsch A., Gerzabek M.H. Effects of level and quality of organic matter input on carbon storage and biological activity in soil: synthesis of a long-term experiment. Global Biogeochemical Cycles 2004, 18:1-9.
27. Klamer M., Bååth E. Estimation of conversion factors for fungal biomass determination in compost using ergosterol and PLFA 18: 2 omega 6,9. Soil Biology & Biochemistry 2004, 36:57-65.
28. Kleber M., Sollins P., Sutton R. Aconceptual model of organo-mineral interactions in soils: self-assembly of organic molecular fragments into zonal structures on mineral surfaces. Biogeochemistry 2007, 85:9-24.
29. Kögel-Knabner I. The macromolecular organic composition of plant and microbial residues as inputs to soil organic matter. Soil Biology & Biochemistry 2002, 34:139-162.
30. Kögel-Knabner I., Ekschmitt K., Flessa H., Guggenberger G., Matzner E., Marschner B., von Lützow M. An integrative approach of organic matter stabilization in temperate soils: linking chemistry, physics, and biology. Journal of Plant Nutrition and Soil Science - Zeitschrift für Pflanzenernährung und Bodenkunde 2008, 171:5-13.
31. Kramer C., Gleixner G. Variable use of plant- and soil-derived carbon by microorganisms in agricultural soils. Soil Biology and Biochemistry 2006, 38:3267-3278.
32. Kramer C., Gleixner G. Soil organic matter in soil depth profiles: distinct carbon preferences of microbial groups during carbon transformation. Soil Biology & Biochemistry 2008, 40:425-433.
33. Kroppenstedt R.M. Fatty Acid and Menaquinone Analysis of Actinomycetes and Related Organisms, Chemical Methods in Bacterial Systematics 1985, Academic Press, London, U.K, pp. 173-199.
34. Kuzyakov Y. Priming effects: interactions between living and dead organic matter. Soil Biology & Biochemistry 2010, 42:1363-1371.
35. Lechevalier M.P. Lipids in bacterial taxonomy - taxonomists view. Crc Critical Reviews in Microbiology 1977, 5:109-210.
36. Marschner B., Brodowski S., Dreves A., Gleixner G., Gude A., Grootes P.M., Hamer U., Heim A., Jandl G., Ji R., Kaiser K., Kalbitz K., Kramer C., Leinweber P., Rethemeyer J., Schaeffer A., Schmidt M.W.I., Schwark L., Wiesenberg G.L.B. How relevant is recalcitrance for the stabilization of organic matter in soils?. Journal of Plant Nutrition and Soil Science - Zeitschrift für Pflanzenernährung und Bodenkunde 2008, 171:91-110.
37. Marx M.C., Wood M., Jarvis S.C. Amicroplate fluorimetric assay for the study of enzyme diversity in soils. Soil Biology & Biochemistry 2001, 33:1633-1640.
38. Merbach W., Garz J., Schliephake W., Stumpe H., Schmidt L. The long-term fertilization experiments in Halle (Saale), Germany - introduction and survey. Journal of Plant Nutrition and Soil Science - Zeitschrift für Pflanzenernährung und Bodenkunde 2000, 163:629-638.
39. 2 by soil microorganisms and transformation into soil organic matter. Organic Geochemistry 2004, 35:1015-1024.
40. Mudd J.B. Phospholipid biosynthesis. Lipids, Structure and Function. The Biochemistry of Plants, A Comprehensive Treatise 1980, Academic Press Inc., New York. P.K. Stumpf (Ed.).
41. Myers R.T., Zak D.R., White D.C., Peacock A. Landscape-level patterns of microbial community composition and substrate use in upland forest ecosystems. Soil Science Society of America Journal 2001, 65:359-367.
42. North P.F. Towards an absolute measurement of soil structural stability using ultrasound. Journal of Soil Science 1976, 27:451-459.
43. Oades J.M. The role of biology in the formation, stabilization and degradation of soil structure. Geoderma 1993, 56:377-400.
44. 2 emissions from agricultural soils. Biogeochemistry 2000, 48:147-163.
45. Pennanen T., Frostegård å., Fritze H., Bååth E. Phospholipid fatty acid composition and heavy metal tolerance of soil microbial communities along two heavy metal-polluted gradients in coniferous forests. Applied and Environmental Microbiology 1996, 62:420-428.
46. Poll C., Ingwersen J., Stemmer M., Gerzabek M.H., Kandeler E. Mechanisms of solute transport affect small-scale abundance and function of soil microorganisms in the detritusphere. European Journal of Soil Science 2006, 57:583-595.
47. Poll C., Marhan S., Ingwersen J., Kandeler E. Dynamics of litter carbon turnover and microbial abundance in a rye detritusphere. Soil Biology & Biochemistry 2008, 40:1306-1321.
48. Poll C., Thiede A., Wermbter N., Sessitsch A., Kandeler E. Micro-scale distribution of microorganisms and microbial enzyme activities in a soil with long-term organic amendment. European Journal of Soil Science 2003, 54:715-724.
49. Rasse D.P., Mulder J., Moni C., Chenu C. Carbon turnover kinetics with depth in a French loamy soil. Soil Science Society of America Journal 2006, 70:2097-2105.
50. Rethemeyer J., Kramer C., Gleixner G., John B., Yamashita T., Flessa H., Andersen N., Nadeau M.J., Grootes P.M. Transformation of organic matter in agricultural soils: radiocarbon concentration versus soil depth. Geoderma 2005, 128:94-105.
51. Rillig M.C., Mummey D.L., Ramsey P.W., Klironomos J.N., Gannon J.E. Phylogeny of arbuscular mycorrhizal fungi predicts community composition of symbiosis-associated bacteria. Fems Microbiology Ecology 2006, 57:389-395.
52. Rubino M., Lubritto C., D'Onofrio A., Terrasi F., Kramer C., Gleixner G., Cotrufo M.F. Isotopic evidences for microbiologically mediated and direct C input to soil compounds from three different leaf litters during their decomposition. Environmental Chemistry Letters 2009, 7:85-95.
53. Schlesinger W.H. Carbon balance in terrestrial detritus. Annual Review of Ecology and Systematics 1977, 8:51-81.
54. Six J., Conant R.T., Paul E.A., Paustian K. Stabilization mechanisms of soil organic matter: implications for C-saturation of soils. Plant and Soil 2002, 241:155-176.
55. Six J., Elliott E.T., Paustian K. Aggregate and soil organic matter dynamics under conventional and no-tillage systems. Soil Science Society of America Journal 1999, 63:1350-1358.
56. Six J., Elliott E.T., Paustian K., Doran J.W. Aggregation and soil organic matter accumulation in cultivated and native grassland soils. Soil Science Society of America Journal 1998, 62:1367-1377.
57. Six J., Frey S.D., Thiet R.K., Batten K.M. Bacterial and fungal contributions to carbon sequestration in agroecosystems. Soil Science Society of America Journal 2006, 70:555-569.
58. Skinner R.H., Sanderson M.A., Tracy B.F., Dell C.J. Above- and belowground productivity and soil carbon dynamics of pasture mixtures. Agronomy Journal 2006, 98:320-326.
59. Sollins P., Homann P., Caldwell B.A. Stabilization and destabilization of soil organic matter: mechanisms and controls. Geoderma 1996, 74:65-105.
60. Sollins P., Kramer M.G., Swanston C., Lajtha K., Filley T., Aufdenkampe A.K., Wagai R., Bowden R.D. Sequential density fractionation across soils of contrasting mineralogy: evidence for both microbial- and mineral-controlled soil organic matter stabilization. Biogeochemistry 2009, 96:209-231.
61. Steinbeiss S., Temperton V.M., Gleixner G. Mechanisms of short-term soil carbon storage in experimental grasslands. Soil Biology & Biochemistry 2008, 40:2634-2642.
62. Stemmer M., Gerzabek M.H., Kandeler E. Organic matter and enzyme activity in particle-size fractions of soils obtained after low-energy sonication. Soil Biology & Biochemistry 1998, 30:9-17.
63. Stephan A., Meyer A.H., Schmid B. Plant diversity affects culturable soil bacteria in experimental grassland communities. Journal of Ecology 2000, 88:988-998.
64. Tarkalson D.D., Jolley V.D., Robbins C.W., Terry R.E. Mycorrhizal colonization and nutrition of wheat and sweet corn grown in manure-treated and untreated topsoil and subsoil. Journal of Plant Nutrition 1998, 21:1985-1999.
65. Tisdall J.M., Oades J.M. Organic-matter and water-stable aggregates in soils. Journal of Soil Science 1982, 33:141-163.
66. Vestal J.R., White D.C. Lipid analysis in microbial ecology - quantitative approaches to the study of microbial communities. Bioscience 1989, 39:535-541.
67. Wardle D.A., Bonner K.I., Barker G.M., Yeates G.W., Nicholson K.S., Bardgett R.D., Watson R.N., Ghani A. Plant removals in perennial grassland: vegetation dynamics, decomposers, soil biodiversity, and ecosystem properties. Ecological Monographs 1999, 69:535-568.
68. White D.C., Davis W.M., Nickels J.S., King J.D., Bobbie R.J. Determination of the sedimentary microbial biomass by extractable lipid phosphate. Oecologia 1979, 40:51-62.
69. WRB World Reference Base for Soil Resources 2006, FAO, Rome. second ed.
70. Zelles L. Phospholipid fatty acid profiles in selected members of soil microbial communities. Chemosphere 1997, 35:275-294.
71. Zelles L. Fatty acid patterns of phospholipids and lipopolysaccharides in the characterisation of microbial communities in soil: a review. Biology and Fertility of Soils 1999, 29:111-129.