메뉴 건너뛰기




Volumn 86, Issue 1, 2012, Pages 117-124

Molecular characterization of pouched amphistome parasites (Trematoda: Gastrothylacidae) using ribosomal ITS2 sequence and secondary structures

Author keywords

[No Author keywords available]

Indexed keywords

INTERNAL TRANSCRIBED SPACER 2; RIBOSOME DNA;

EID: 84856269522     PISSN: 0022149X     EISSN: 14752697     Source Type: Journal    
DOI: 10.1017/S0022149X11000125     Document Type: Article
Times cited : (40)

References (35)
  • 1
    • 0030030777 scopus 로고    scopus 로고
    • Evolutionary biology of parasitic platyhelminths: The role of molecular phylogenetics
    • DOI 10.1016/0169-4758(96)80657-0
    • Blair, D., Campos, A., Cummings, M.P. & Laclette, J.P. (1996) Evolutionary biology of parasitic platyhel-minths: the role of molecular phylogenetics. Parasitol-ogy Today 12, 66-71. (Pubitemid 26037488)
    • (1996) Parasitology Today , vol.12 , Issue.2 , pp. 66-71
    • Blair, D.1    Campos, A.2    Cummings, M.P.3    Laclette, J.P.4
  • 3
    • 0037677692 scopus 로고    scopus 로고
    • ITS2 is a double-edged tool for eukaryote evolutionary comparisons
    • DOI 10.1016/S0168-9525(03)00118-5
    • Coleman, A.W. (2003) ITS2 is a double-edged tool for eukaryote evolutionary comparisons. Trends in Genetics 19, 370-375. (Pubitemid 36794538)
    • (2003) Trends in Genetics , vol.19 , Issue.7 , pp. 370-375
    • Coleman, A.W.1
  • 4
    • 34250821680 scopus 로고    scopus 로고
    • Pan-eukaryote ITS2 homologies revealed by RNA secondary structure
    • DOI 10.1093/nar/gkm233
    • Coleman, A.W. (2007) Pan-eukaryote ITS2 homologies revealed by RNA secondary structure. Nucleic Acids Research 35, 3322-3329. (Pubitemid 47073596)
    • (2007) Nucleic Acids Research , vol.35 , Issue.10 , pp. 3322-3329
    • Coleman, A.W.1
  • 5
    • 57649155508 scopus 로고    scopus 로고
    • Is there a molecular key to the level of 'biological species' in eukaryotes? A DNA guide
    • Coleman, A.W. (2009) Is there a molecular key to the level of 'biological species' in eukaryotes? A DNA guide. Molecular Phylogenetics and Evolution 50, 197-203.
    • (2009) Molecular Phylogenetics and Evolution , vol.50 , pp. 197-203
    • Coleman, A.W.1
  • 6
    • 0031743421 scopus 로고    scopus 로고
    • Profile hidden Markov models
    • Eddy, S.R. (1998) Profile hidden Markov models. Bioinformatics 14, 755-763. (Pubitemid 28552108)
    • (1998) Bioinformatics , vol.14 , Issue.9 , pp. 755-763
    • Eddy, S.R.1
  • 7
    • 18744401646 scopus 로고    scopus 로고
    • ProfDist: A tool for the construction of large phylogenetic trees based on profile distances
    • DOI 10.1093/bioinformatics/bti289
    • Friedrich, J., Dandekar, T., Schultz, J. & Müller, T. (2005) ProfDist: a tool for the construction of large phyloge-netic trees based on profile distances. Bioinformatics 21, 2108-2109. (Pubitemid 40668059)
    • (2005) Bioinformatics , vol.21 , Issue.9 , pp. 2108-2109
    • Friedrich, J.1    Dandekar, T.2    Wolf, M.3    Muller, T.4
  • 8
    • 0242578620 scopus 로고    scopus 로고
    • A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood
    • DOI 10.1080/10635150390235520
    • Guindon, S. & Gascuel, O. (2003) A simple, fast and accurate method to estimate large phylogenies by maximum-likelihood. Systematic Biology 52, 696-704. (Pubitemid 37365050)
    • (2003) Systematic Biology , vol.52 , Issue.5 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 9
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall, T.A. (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series 41, 95-98.
    • (1999) Nucleic Acids Symposium Series , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 10
    • 0034849408 scopus 로고    scopus 로고
    • MRBAYES: Bayesian inference of phylogeny
    • Huelsenbeck, J.P. & Ronquist, F. (2001) MRBAYES: Bayesian inference of phylogeny. Bioinformatics 17, 754-755.
    • (2001) Bioinformatics , vol.17 , pp. 754-755
    • Huelsenbeck, J.P.1    Ronquist, F.2
  • 11
    • 0642369593 scopus 로고    scopus 로고
    • Discrimination of three amphistome species by PCR-RFLP based on rDNA ITS2 markers
    • Itagaki, T., Tsumagari, N., Tsutsumi, K. & Chinoni, S. (2003) Discrimination of three amphistome species by PCR-RFLP based on rDNA ITS2 markers. Journal of Veterinary Medical Science 65, 931-933. (Pubitemid 41380117)
    • (2003) Journal of Veterinary Medical Science , vol.65 , Issue.8 , pp. 931-933
    • Itagaki, T.1    Tsumagari, N.2    Tsutsumi, K.-I.3    Chinone, S.4
  • 12
    • 70350306702 scopus 로고    scopus 로고
    • Family Gastrothylacidae Stiles & Gold-berger, 1910
    • Jones, A., Bray, R.A. & Gibson, D.I. (Eds) London, CABI Publishing and The Natural History Museum
    • Jones, A. (2005) Family Gastrothylacidae Stiles & Gold-berger, 1910. pp. 337-341 in Jones, A., Bray, R.A. & Gibson, D.I. (Eds) Keys to the Trematoda, Volume 2. London, CABI Publishing and The Natural History Museum.
    • (2005) Keys to the Trematoda , vol.2 , pp. 337-341
    • Jones, A.1
  • 13
    • 0033485458 scopus 로고    scopus 로고
    • Ribosomal internal transcribed spacer 2 (ITS2) exhibits a common core of secondary structure in vertebrates and yeast
    • Joseph, N., Krauskopf, E., Vera, M.I. & Michot, B. (1999) Ribosomal internal transcribed spacer 2 (ITS2) exhibits a common core of secondary structure in vertebrates and yeast. Nucleic Acids Research 27, 4533-4540.
    • (1999) Nucleic Acids Research , vol.27 , pp. 4533-4540
    • Joseph, N.1    Krauskopf, E.2    Vera, M.I.3    Michot, B.4
  • 15
    • 76749097624 scopus 로고    scopus 로고
    • Including RNA secondary structures improves accuracy and robustness in reconstruction of phylogenetic trees
    • Keller, A., Forster, F., Müller, T., Dandekar, T., Schultz, J. & Wolf, M. (2010) Including RNA secondary structures improves accuracy and robustness in reconstruction of phylogenetic trees. Biology Direct 5, 4.
    • (2010) Biology Direct , vol.5 , pp. 4
    • Keller, A.1    Forster, F.2    Müller, T.3    Dandekar, T.4    Schultz, J.5    Wolf, M.6
  • 17
    • 0031664649 scopus 로고    scopus 로고
    • Trematode and monogenean rRNA ITS2 secondary structures support a four- domain model
    • DOI 10.1007/PL00006398
    • Morgan, J.A.T. & Blair, D. (1998) Trematode and monogenean rRNA ITS2 secondary structures support a four-domain model. Journal of Molecular Evolution 47, 406-419. (Pubitemid 28457758)
    • (1998) Journal of Molecular Evolution , vol.47 , Issue.4 , pp. 406-419
    • Morgan, J.A.T.1    Blair, D.2
  • 18
    • 26844520045 scopus 로고    scopus 로고
    • The use and implications of ribosomal DNA sequencing for the discrimination of digenean species
    • DOI 10.1016/S0065-308X(05)60002-4, PII S0065308X05600024
    • Nolan, M.J. & Cribb, T.H. (2005) The use and implications of ribosomal DNA sequencing for the discrimination of digenean species. Advances in Parasitology 60, 101-163. (Pubitemid 41447519)
    • (2005) Advances in Parasitology , vol.60 , pp. 101-163
    • Nolan, M.J.1    Cribb, T.H.2
  • 19
    • 0030203863 scopus 로고    scopus 로고
    • TREEVIEW: An application to display phylogenetic trees on personal computers
    • Page, R.D.M. (1996) TREEVIEW: an application to display phylogenetic trees on personal computers. Computer Applications in the Biosciences 12, 357-358.
    • (1996) Computer Applications in the Biosciences , vol.12 , pp. 357-358
    • Page, R.D.M.1
  • 20
    • 33947694218 scopus 로고    scopus 로고
    • Seasonal pattern of bovine amphistomosis in traditionally reared cattle in the Kafue and Zambezi catchment areas of Zambia
    • DOI 10.1007/s11250-007-4406-z
    • Phiri, A.M., Chota, A. & Phiri, I.K. (2007) Seasonal pattern of bovine amphistomosis in traditionally reared cattle in the Kafue and Zambezi catchment areas of Zambia. Tropical Animal Health and Production 39, 97-102. (Pubitemid 46496208)
    • (2007) Tropical Animal Health and Production , vol.39 , Issue.2 , pp. 97-102
    • Phiri, A.M.1    Chota, A.2    Phiri, I.K.3
  • 21
    • 45849154165 scopus 로고    scopus 로고
    • JModelTest: Phylogenetic model averaging
    • DOI 10.1093/molbev/msn083
    • Posada, D. (2008) jModelTest: Phylogenetic Model Averaging. Molecular Biology and Evolution 25, 1253-1256. (Pubitemid 351882013)
    • (2008) Molecular Biology and Evolution , vol.25 , Issue.7 , pp. 1253-1256
    • Posada, D.1
  • 22
    • 34948856429 scopus 로고    scopus 로고
    • PCR-based determination of internal transcribed spacer (ITS) regions of ribosomal DNA of giant intestinal fluke, Fasciolopsis buski (Lankester, 1857) Looss, 1899
    • DOI 10.1007/s00436-007-0680-y
    • Prasad, P.K. Tandon,V.,Chatterjee,A.&Bandhopadhyay, S. (2007) PCR-based determination of internal transcribed spacer (ITS) regions of ribosomal DNA of giant intestinal fluke, Fasciolopsis buski (Lankester 1857) Looss 1899. Parasitology Research 101, 1581-1587. (Pubitemid 47524844)
    • (2007) Parasitology Research , vol.101 , Issue.6 , pp. 1581-1587
    • Prasad, P.K.1    Tandon, V.2    Chatterjee, A.3    Bandyopadhyay, S.4
  • 23
    • 79958239498 scopus 로고
    • Calicophoron shillongensis sp. n. Trematoda: Paramphistomidae), a new parasite from the goat (Capra hircus L.) in India
    • Roy, B. & Tandon, V. (1995) Calicophoron shillongensis sp. n. (Trematoda: Paramphistomidae), a new parasite from the goat (Capra hircus L.) in India. Acta Parasitologica 40, 193-197.
    • (1995) Acta Parasitologica , vol.40 , pp. 193-197
    • Roy, B.1    Tandon, V.2
  • 25
    • 15444361843 scopus 로고    scopus 로고
    • A common core of secondary structure of the internal transcribed spacer 2 (ITS2) throughout the Eukaryota
    • DOI 10.1261/rna.7204505
    • Schultz, J., Maisel, S., Gerlach, D., Müller, T. & Wolf, M. (2005) A common core of secondary structure of the internal transcribed spacer 2 (ITS2) throughout the Eukaryota. RNA 11, 361-364. (Pubitemid 40397169)
    • (2005) RNA , vol.11 , Issue.4 , pp. 361-364
    • Schultz, J.1    Maisel, S.2    Gerlach, D.3    Muller, T.4    Wolf, M.5
  • 26
    • 33747844305 scopus 로고    scopus 로고
    • The internal transcribed spacer 2 Database-a web server for (not only) low level phylogenetic analyses
    • Schultz, J., Müller, T., Actziger, M., Seibel, P.N., Dandekar, T. & Wolf, M. (2006) The internal transcribed spacer 2 Database-a web server for (not only) low level phylogenetic analyses. Nucleic Acids Research 34, 704-707.
    • (2006) Nucleic Acids Research , vol.34 , pp. 704-707
    • Schultz, J.1    Müller, T.2    Actziger, M.3    Seibel, P.N.4    Dandekar, T.5    Wolf, M.6
  • 27
    • 33751213606 scopus 로고    scopus 로고
    • 4SALE-a tool for synchronous RNA sequence and secondary structure alignment and editing
    • Seibel, P.N., Müller, T., Dandekar, T., Schultz, J. & Wolf, M. (2006) 4SALE-a tool for synchronous RNA sequence and secondary structure alignment and editing. BMC Bioinformatics 7, 498.
    • (2006) BMC Bioinformatics , vol.7 , pp. 498
    • Seibel, P.N.1    Müller, T.2    Dandekar, T.3    Schultz, J.4    Wolf, M.5
  • 28
    • 58049121167 scopus 로고    scopus 로고
    • Synchronous visual analysis and editing of RNA sequence and secondary structure alignments using 4SALE
    • Seibel, P.N., Müller, T., Dandekar, T. & Wolf, M. (2008) Synchronous visual analysis and editing of RNA sequence and secondary structure alignments using 4SALE. BMC Research Notes 1, 91.
    • (2008) BMC Research Notes , vol.1 , pp. 91
    • Seibel, P.N.1    Müller, T.2    Dandekar, T.3    Wolf, M.4
  • 29
    • 38549087890 scopus 로고    scopus 로고
    • The ITS2 Database II: Homology modelling RNA structure for molecular systematics
    • DOI 10.1093/nar/gkm827
    • Selig, C., Wolf, M., Müller, T., Dandekar, T. & Schultz, J. (2008) The ITS2 Database II: homology modelling RNA structure for molecular systematics. Nucleic Acids Research 36, D377-D380. (Pubitemid 351149752)
    • (2008) Nucleic Acids Research , vol.36 , Issue.SUPPL. 1
    • Selig, C.1    Wolf, M.2    Muller, T.3    Dandekar, T.4    Schultz, J.5
  • 31
    • 33751171141 scopus 로고    scopus 로고
    • Morphological studies and identification of rumen flukes of cattle in Thailand
    • Sey, O., Prasitirat, P., Romratanapun, S. & Mohkaew, K. (1997) Morphological studies and identification of rumen flukes of cattle in Thailand. Rivista di Parassitologia 2, 247-256.
    • (1997) Rivista di Parassitologia , vol.2 , pp. 247-256
    • Sey, O.1    Prasitirat, P.2    Romratanapun, S.3    Mohkaew, K.4
  • 32
    • 79956199560 scopus 로고    scopus 로고
    • Secondary structure analysis of ITS2 in the rDNA of three Indian paramphistomid species found in local livestock
    • Shylla, J.A., Ghatani, S., Chatterjee, A. & Tandon, V. (2011) Secondary structure analysis of ITS2 in the rDNA of three Indian paramphistomid species found in local livestock. Parasitology Research 108, 1027-1032.
    • (2011) Parasitology Research , vol.108 , pp. 1027-1032
    • Shylla, J.A.1    Ghatani, S.2    Chatterjee, A.3    Tandon, V.4
  • 33
    • 0029054535 scopus 로고
    • Evolutionarily conserved structural elements are critical for processing of internal transcribed spacer 2 from Saccharomyces cerevisiae precursor ribosomal RNA
    • Van Nues, R.W., Rientjes, J.M.J., Morre, S.A., Mollee, E., Planta, R.J., Venema, J. & Raue, H.A. (1995) Evolutionarily conserved structural elements are critical for processing of internal transcribed spacer 2 from Saccharomyces cerevisiae precursor ribosomal RNA. Journal of Molecular Biology 250, 24-36.
    • (1995) Journal of Molecular Biology , vol.250 , pp. 24-36
    • Van Nues, R.W.1    Rientjes, J.M.J.2    Morre, S.A.3    Mollee, E.4    Planta, R.J.5    Venema, J.6    Raue, H.A.7
  • 34
    • 53849098418 scopus 로고    scopus 로고
    • ProfDistS: (profile-) distance based phylogeny on sequence-structure alignments
    • Wolf, M., Ruderisch, B., Dandekar, T., Schultz, J. & Müller, T. (2008) ProfDistS: (profile-) distance based phylogeny on sequence-structure alignments. Bio-informatics 24, 2401-2402.
    • (2008) Bio-informatics , vol.24 , pp. 2401-2402
    • Wolf, M.1    Ruderisch, B.2    Dandekar, T.3    Schultz, J.4    Müller, T.5
  • 35
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • DOI 10.1093/nar/gkg595
    • Zuker, M. (2003) Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Research 31, 3406-3415. (Pubitemid 37442169)
    • (2003) Nucleic Acids Research , vol.31 , Issue.13 , pp. 3406-3415
    • Zuker, M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.