메뉴 건너뛰기




Volumn 840, Issue , 2012, Pages 1-11

Setting Up an ancient DNA laboratory

Author keywords

aDNA; Ancient DNA; Contamination; DNA damage; Guidelines; Laboratory setup; Sample preparation; Sub sampling

Indexed keywords

DNA;

EID: 84856269184     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-61779-516-9_1     Document Type: Article
Times cited : (60)

References (44)
  • 1
    • 0021688630 scopus 로고
    • DNA-sequences from the Quagga, an extinct member of the horse family
    • Higuchi R, Bowman B, Freiberger M et al (1984) DNA-sequences from the Quagga, an extinct member of the horse family. Nature 312:282-284
    • (1984) Nature , vol.312 , pp. 282-284
    • Higuchi, R.1    Bowman, B.2    Freiberger, M.3
  • 2
    • 0022372670 scopus 로고
    • Enzymatic amplification of beta-globin genomic sequences and restriction site analysis for diagnosis of sickle-cell anemia
    • Saiki RK, Scharf S, Faloona F et al (1985) Enzymatic amplification of beta-globin genomic sequences and restriction site analysis for diagnosis of sickle-cell anemia. Science 230:1350-1354
    • (1985) Science , vol.230 , pp. 1350-1354
    • Saiki, R.K.1    Scharf, S.2    Faloona, F.3
  • 3
    • 0024970684 scopus 로고
    • Ancient DNA and the polymerase chain-reaction- The emerging field of molecular archaeology
    • Pääbo S, Higuchi RG, Wilson AC (1989) Ancient DNA and the polymerase chain-reaction- the emerging fi eld of molecular archaeology. J Biol Chem 264:9709-9712
    • (1989) J Biol Chem , vol.264 , pp. 9709-9712
    • Pääbo, S.1    Higuchi, R.G.2    Wilson, A.C.3
  • 4
    • 77952136530 scopus 로고    scopus 로고
    • A draft sequence of the Neandertal genome
    • Green RE, Krause J, Briggs AW et al (2010) A draft sequence of the Neandertal genome. Science 328:710-722
    • (2010) Science , vol.328 , pp. 710-722
    • Green, R.E.1    Krause, J.2    Briggs, A.W.3
  • 5
    • 34447300408 scopus 로고    scopus 로고
    • Mitochondrial DNA analysis shows a Near Eastern Neolithic origin for domestic cattle and no indication of domestication of European aurochs
    • Edwards CJ, Bollongino R, Scheu A et al (2007) Mitochondrial DNA analysis shows a Near Eastern Neolithic origin for domestic cattle and no indication of domestication of European aurochs. Proc Biol Sci 274:1377-1385
    • (2007) Proc Biol Sci , vol.274 , pp. 1377-1385
    • Edwards, C.J.1    Bollongino, R.2    Scheu, A.3
  • 6
    • 77952366354 scopus 로고    scopus 로고
    • Patterns of East Asian pig domestication, migration, and turnover revealed by modern and ancient DNA
    • Larson G, Liu RR, Zhao XB et al (2010) Patterns of East Asian pig domestication, migration, and turnover revealed by modern and ancient DNA. Proc Natl Acad Sci U S A 107:7686-7691
    • (2010) Proc Natl Acad Sci U S A , vol.107 , pp. 7686-7691
    • Larson, G.1    Liu, R.R.2    Zhao, X.B.3
  • 7
    • 0037159766 scopus 로고    scopus 로고
    • Ancient DNA evidence for old world origin of new world dogs
    • Leonard JA, Wayne RK, Wheeler J et al (2002) Ancient DNA evidence for Old World origin of New World dogs. Science 298:1613-1616
    • (2002) Science , vol.298 , pp. 1613-1616
    • Leonard, J.A.1    Wayne, R.K.2    Wheeler, J.3
  • 8
    • 0027409768 scopus 로고
    • Evolution of Maize inferred from sequence diversity of an Adh2 gene segment from archaeological specimens
    • Goloubinoff P, Pääbo S, Wilson AC (1993) Evolution of Maize inferred from sequence diversity of an Adh2 gene segment from archaeological specimens. Proc Natl Acad Sci U S A 90:1997-2001
    • (1993) Proc Natl Acad Sci U S A , vol.90 , pp. 1997-2001
    • Goloubinoff, P.1    Pääbo, S.2    Wilson, A.C.3
  • 9
    • 77951595304 scopus 로고    scopus 로고
    • Withering away-25,000 years of genetic decline preceded cave bear extinction
    • Stiller M, Baryshnikov G, Bocherens H et al (2010) Withering away-25,000 years of genetic decline preceded cave bear extinction. Mol Biol Evol 27:975-978
    • (2010) Mol Biol Evol , vol.27 , pp. 975-978
    • Stiller, M.1    Baryshnikov, G.2    Bocherens, H.3
  • 10
    • 9444220256 scopus 로고    scopus 로고
    • Rise and fall of the Beringian steppe bison
    • Shapiro B, Drummond AJ, Rambaut A et al (2004) Rise and fall of the Beringian steppe bison. Science 306:1561-1565
    • (2004) Science , vol.306 , pp. 1561-1565
    • Shapiro, B.1    Drummond, A.J.2    Rambaut, A.3
  • 11
    • 77950437916 scopus 로고    scopus 로고
    • Ancient DNA analyses exclude humans as the driving force behind late Pleistocene musk ox (Ovibos moschatus population dynamics)
    • Campos PF, Willerslev E, Sher A et al (2010) Ancient DNA analyses exclude humans as the driving force behind late Pleistocene musk ox (Ovibos moschatus) population dynamics. Proc Natl Acad Sci U S A 107:5675-5680
    • (2010) Proc Natl Acad Sci U S A , vol.107 , pp. 5675-5680
    • Campos, P.F.1    Willerslev, E.2    Sher, A.3
  • 13
    • 77953493208 scopus 로고    scopus 로고
    • Dispersal provided resilience to range collapse in a marine mammal: Insights from the past to inform conservation biology
    • Pinsky ML, Newsome SD, Dickerson BR et al (2010) Dispersal provided resilience to range collapse in a marine mammal: insights from the past to inform conservation biology. Mol Ecol 19:2418-2429
    • (2010) Mol Ecol , vol.19 , pp. 2418-2429
    • Pinsky, M.L.1    Newsome, S.D.2    Dickerson, B.R.3
  • 15
    • 76049111378 scopus 로고    scopus 로고
    • Revising the recent evolutionary history of equids using ancient DNA
    • Orlando L, Metcalf JL, Alberdi MT et al (2009) Revising the recent evolutionary history of equids using ancient DNA. Proc Natl Acad Sci U S A 106:21754-21759
    • (2009) Proc Natl Acad Sci U S A , vol.106 , pp. 21754-21759
    • Orlando, L.1    Metcalf, J.L.2    Alberdi, M.T.3
  • 16
    • 50049087042 scopus 로고    scopus 로고
    • Mitochondrial genomes reveal an explosive radiation of extinct and extant bears near the Miocene-Pliocene boundary
    • Krause J, Unger T, Nocon A et al (2008) Mitochondrial genomes reveal an explosive radiation of extinct and extant bears near the Miocene-Pliocene boundary. BMC Evol Biol 8:220
    • (2008) BMC Evol Biol , vol.8 , pp. 220
    • Krause, J.1    Unger, T.2    Nocon, A.3
  • 17
    • 0027278557 scopus 로고
    • Instability and decay of the primary structure of DNA
    • Lindahl T (1993) Instability and decay of the primary structure of DNA. Nature 362: 709-715
    • (1993) Nature , vol.362 , pp. 709-715
    • Lindahl, T.1
  • 18
    • 0000832946 scopus 로고
    • Ancient DNA-extraction, characterization, molecular-cloning, and enzymatic amplification
    • Pääbo S (1989) Ancient DNA-extraction, characterization, molecular-cloning, and enzymatic amplification. Proc Natl Acad Sci U S A 86:1939-1943
    • (1989) Proc Natl Acad Sci U S A , vol.86 , pp. 1939-1943
    • Pääbo, S.1
  • 19
    • 31144442151 scopus 로고    scopus 로고
    • Metagenomics to paleogenomics: Large-scale sequencing of mammoth DNA
    • Poinar HN, Schwarz C, Qi J et al (2006) Metagenomics to paleogenomics: large-scale sequencing of mammoth DNA. Science 311: 392-394
    • (2006) Science , vol.311 , pp. 392-394
    • Poinar, H.N.1    Schwarz, C.2    Qi, J.3
  • 20
    • 0029925452 scopus 로고    scopus 로고
    • DNA damage and DNA sequence retrieval from ancient tissues
    • Hoss M, Jaruga P, Zastawny TH et al (1996) DNA damage and DNA sequence retrieval from ancient tissues. Nucleic Acids Res 24:1304-1307
    • (1996) Nucleic Acids Res , vol.24 , pp. 1304-1307
    • Hoss, M.1    Jaruga, P.2    Zastawny, T.H.3
  • 21
    • 27844470567 scopus 로고    scopus 로고
    • The population history of extant and extinct hyenas
    • Rohland N, Pollack JL, Nagel D et al (2005) The population history of extant and extinct hyenas. Mol Biol Evol 22:2435-2443
    • (2005) Mol Biol Evol , vol.22 , pp. 2435-2443
    • Rohland, N.1    Pollack, J.L.2    Nagel, D.3
  • 22
    • 56949093847 scopus 로고    scopus 로고
    • Long DNA sequences and large data sets: Investigating the Quaternary via ancient DNA
    • Hofreiter M (2008) Long DNA sequences and large data sets: investigating the Quaternary via ancient DNA. Quat Sci Rev 27:2586-2592
    • (2008) Quat Sci Rev , vol.27 , pp. 2586-2592
    • Hofreiter, M.1
  • 23
    • 0027378670 scopus 로고
    • Recovery of antediluvian DNA
    • Lindahl T (1993) Recovery of antediluvian DNA. Nature 365:700
    • (1993) Nature , vol.365 , pp. 700
    • Lindahl, T.1
  • 25
    • 19944416873 scopus 로고    scopus 로고
    • Genetic analyses from ancient DNA
    • Pääbo S, Poinar H, Serre D et al (2004) Genetic analyses from ancient DNA. Annu Rev Genet 38:645-679
    • (2004) Annu Rev Genet , vol.38 , pp. 645-679
    • Pääbo, S.1    Poinar, H.2    Serre, D.3
  • 27
    • 34447092494 scopus 로고    scopus 로고
    • Animal DNA in PCR reagents plagues ancient DNA research
    • Leonard JA, Shanks O, Hofreiter M et al (2007) Animal DNA in PCR reagents plagues ancient DNA research. J Archaeol Sci 34:1361-1366
    • (2007) J Archaeol Sci , vol.34 , pp. 1361-1366
    • Leonard, J.A.1    Shanks, O.2    Hofreiter, M.3
  • 29
    • 0028332430 scopus 로고
    • Ancient DNA-methodological challenges
    • Handt O, Hoss M, Krings M et al (1994) Ancient DNA-methodological challenges. Experientia 50:524-529
    • (1994) Experientia , vol.50 , pp. 524-529
    • Handt, O.1    Hoss, M.2    Krings, M.3
  • 30
    • 0034682945 scopus 로고    scopus 로고
    • Ancient DNA: Do it right or not at all
    • Cooper A, Poinar HN (2000) Ancient DNA: do it right or not at all. Science 289:1139
    • (2000) Science , vol.289 , pp. 1139
    • Cooper, A.1    Poinar, H.N.2
  • 31
    • 0029663543 scopus 로고    scopus 로고
    • Amino acid racemization and the preservation of ancient DNA
    • Poinar HN, Hoss M, Bada JL et al (1996) Amino acid racemization and the preservation of ancient DNA. Science 272:864-866
    • (1996) Science , vol.272 , pp. 864-866
    • Poinar, H.N.1    Hoss, M.2    Bada, J.L.3
  • 32
    • 68249101253 scopus 로고    scopus 로고
    • Is amino acid racemization a useful tool for screening for ancient DNA in bone?
    • Collins MJ, Penkman KE, Rohland N et al (2009) Is amino acid racemization a useful tool for screening for ancient DNA in bone? Proc Biol Sci 276:2971-2977
    • (2009) Proc Biol Sci , vol.276 , pp. 2971-2977
    • Collins, M.J.1    Penkman, K.E.2    Rohland, N.3
  • 33
    • 0029834127 scopus 로고    scopus 로고
    • The retrieval of ancient human DNA sequences
    • Handt O, Krings M, Ward RH et al (1996) The retrieval of ancient human DNA sequences. Am J Hum Genet 59:368-376
    • (1996) Am J Hum Genet , vol.59 , pp. 368-376
    • Handt, O.1    Krings, M.2    Ward, R.H.3
  • 35
    • 1242299736 scopus 로고    scopus 로고
    • Isolation of nucleic acids and cultures from fossil ice and permafrost
    • Willerslev E, Hansen AJ, Poinar HN (2004) Isolation of nucleic acids and cultures from fossil ice and permafrost. Trends Ecol Evol 19:141-147
    • (2004) Trends Ecol Evol , vol.19 , pp. 141-147
    • Willerslev, E.1    Hansen, A.J.2    Poinar, H.N.3
  • 37
    • 25144473574 scopus 로고    scopus 로고
    • Use of bleach to eliminate contaminating DNA from the surface of bones and teeth
    • Kemp BM, Smith DG (2005) Use of bleach to eliminate contaminating DNA from the surface of bones and teeth. Forensic Sci Int 154: 53-61
    • (2005) Forensic Sci Int , vol.154 , pp. 53-61
    • Kemp, B.M.1    Smith, D.G.2
  • 38
    • 33646167599 scopus 로고    scopus 로고
    • Insights into the processes behind the contamination of degraded human teeth and bone samples with exogenous sources of DNA
    • Gilbert MTP, Hansen AJ, Willerslev E et al (2006) Insights into the processes behind the contamination of degraded human teeth and bone samples with exogenous sources of DNA. Int J Osteoarchaeol 16:156-164
    • (2006) Int J Osteoarchaeol , vol.16 , pp. 156-164
    • Gilbert, M.T.P.1    Hansen, A.J.2    Willerslev, E.3
  • 39
    • 33748144626 scopus 로고    scopus 로고
    • Tracking down human contamination in ancient human teeth
    • Sampietro ML, Gilbert MTP, Lao O et al (2006) Tracking down human contamination in ancient human teeth. Mol Biol Evol 23: 1801-1807
    • (2006) Mol Biol Evol , vol.23 , pp. 1801-1807
    • Sampietro, M.L.1    Gilbert, M.T.P.2    Lao, O.3
  • 40
    • 25444531189 scopus 로고    scopus 로고
    • Relatively well preserved DNA is present in the crystal aggregates of fossil bones
    • Salamon M, Tuross N, Arensburg B et al (2005) Relatively well preserved DNA is present in the crystal aggregates of fossil bones. Proc Natl Acad Sci U S A 102:13783-13788
    • (2005) Proc Natl Acad Sci U S A , vol.102 , pp. 13783-13788
    • Salamon, M.1    Tuross, N.2    Arensburg, B.3
  • 41
    • 30344463801 scopus 로고    scopus 로고
    • Resistance of degraded hair shafts to contaminant DNA
    • Gilbert MTP, Menez L, Janaway RC et al (2006) Resistance of degraded hair shafts to contaminant DNA. Forensic Sci Int 156: 208-212
    • (2006) Forensic Sci Int , vol.156 , pp. 208-212
    • Gilbert, M.T.P.1    Menez, L.2    Janaway, R.C.3
  • 42
    • 76749141381 scopus 로고    scopus 로고
    • Ancient human genome sequence of an extinct Palaeo-Eskimo
    • Rasmussen M, Li YR, Lindgreen S et al (2010) Ancient human genome sequence of an extinct Palaeo-Eskimo. Nature 463:757-762
    • (2010) Nature , vol.463 , pp. 757-762
    • Rasmussen, M.1    Li, Y.R.2    Lindgreen, S.3
  • 43
    • 0035581087 scopus 로고    scopus 로고
    • DNA sequences from multiple amplifications reveal artifacts induced by cytosine deamination in ancient DNA
    • Hofreiter M, Jaenicke V, Serre D et al (2001) DNA sequences from multiple amplifications reveal artifacts induced by cytosine deamination in ancient DNA. Nucleic Acids Res 29:4793-4799
    • (2001) Nucleic Acids Res , vol.29 , pp. 4793-4799
    • Hofreiter, M.1    Jaenicke, V.2    Serre, D.3
  • 44
    • 34248549305 scopus 로고    scopus 로고
    • Comparison and optimization of ancient DNA extraction
    • Rohland N, Hofreiter M (2007) Comparison and optimization of ancient DNA extraction. Biotechniques 42:343-352
    • (2007) Biotechniques , vol.42 , pp. 343-352
    • Rohland, N.1    Hofreiter, M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.