Development of replicative oriC plasmids and their versatile use in genetic manipulation of Cytophaga hutchinsonii

Applied Microbiology and Biotechnology

Volumn 93, Issue 2, 2012, Pages 697-705

  Xu, Yuanxi ^a   Ji, Xiaofei ^a   Chen, Ning ^a   Li, Pengwei ^a   Liu, Weifeng ^a   Lu, Xuemei ^a  

^a SHANDONG UNIVERSITY   (China)

Author keywords

Cytophaga hutchinsonii; Genetic manipulation; Genetic tools; oriC plasmid

Indexed keywords

AEROBIC FUNGI; AEROBIC SOIL; ANAEROBIC BACTERIUM; CELLULOSE DEGRADATION; CRYSTALLINE CELLULOSE; CYTOPHAGA HUTCHINSONII; ELECTROPORATION; EXTRACELLULAR PROTEINS; GALACTOSIDASES; GENETIC MANIPULATIONS; GENETIC TECHNIQUES; GENETIC TOOLS; GENOME SEQUENCES; GREEN FLUORESCENT PROTEIN; HETEROLOGOUS PROTEINS; HOMOLOGOUS RECOMBINATION; ORIC PLASMID; ORIC PLASMIDS; PLASMID DNA; REPLICATION ORIGIN; SHUTTLE VECTOR; TRANSFORMANTS;

AEROBIC BACTERIA; CELLULOSE; DNA; ESCHERICHIA COLI; GENE ENCODING; PROTEINS;

MOLECULAR BIOLOGY;

BETA GALACTOSIDASE; CELLULOSE; GREEN FLUORESCENT PROTEIN; PLASMID DNA;

BACTERIUM; CELLULOSE; FUNGUS; GENETIC ANALYSIS; GENOME; OXIC CONDITIONS; PLASMID; PROTEIN; RECOMBINATION; SOIL MICROORGANISM;

ARTICLE; BACTERIUM; CHROMOSOME REPLICATION; CONTROLLED STUDY; CYTOPHAGA HUTCHINSONII; DEGRADATION; ELECTROPORATION; ELECTROTRANSFORMATION; ESCHERICHIA COLI; GENE EXPRESSION; GENE TARGETING; GENETIC MANIPULATION; NONHUMAN; PLASMID; PROTEIN EXPRESSION;

CYTOPHAGA; ELECTROPORATION; ESCHERICHIA COLI; GENETIC ENGINEERING; GENETIC VECTORS; GENETICS, MICROBIAL; MOLECULAR BIOLOGY; PLASMIDS; REPLICATION ORIGIN; TRANSFORMATION, BACTERIAL;

BACTERIA (MICROORGANISMS); CYTOPHAGA HUTCHINSONII; ESCHERICHIA COLI; FUNGI; NEGIBACTERIA;

EID: 84856248874     PISSN: 01757598     EISSN: 14320614     Source Type: Journal    
DOI: 10.1007/s00253-011-3572-0     Document Type: Article

References (38)

1. Agarwal S, Hunnicutt DW, McBride MJ (1997) Cloning and characterization of the Flavobacterium johnsoniae (Cytophaga johnsonae) gliding motility gene, gldA. Proc Natl Acad Sci USA 94(22):12139-12144 (Pubitemid 27467856)
2. Andersen JB, Sternberg C, Poulsen LK, Bjorn SP, Givskov M, Molin S (1998) New unstable variants of green fluorescent protein for studies of transient gene expression in bacteria. Appl Environ Microbiol 64(6):2240-2246 (Pubitemid 28252792)
3. Bayley DP, Rocha ER, Smith CJ (2000) Analysis of cepA and other Bacteroides fragilis genes reveals a unique promoter structure. FEMS Microbiol Lett 193(1):149-154. doi: 10.1016/S0378-1097(00)00472-9
4. Bayer EA, Belaich JP, Shoham Y, Lamed R (2004) The cellulosomes: multienzyme machines for degradation of plant cell wall polysaccharides. Annu Rev Microbiol 58:521-554. doi: 10.1146/annurev.micro.57.030502.091022 10.1146/annurev.micro.57.030502.091022 1:CAS:528:DC%2BD2cXhtVejsr3M Bayer EA, Belaich JP, Shoham Y, Lamed R (2004) The cellulosomes: multienzyme machines for degradation of plant cell wall polysaccharides. Annu Rev Microbiol 58:521-554. doi: 10.1146/annurev.micro.57.030502.091022 (Pubitemid 39551996)
5. Buist G, Ridder AN, Kok J, Kuipers OP (2006) Different subcellular locations of secretome components of Gram-positive bacteria. Microbiology 152(Pt 10):2867-2874. doi: 10.1099/mic.0.29113-0 (Pubitemid 44542368)
6. Chen S, Bagdasarian M, Kaufman MG, Bates AK, Walker ED (2007a) Mutational analysis of the ompA promoter from Flavobacterium johnsoniae. J Bacteriol 189(14):5108-5118. doi: 10.1128/JB.00401-07 (Pubitemid 47076057)
7. Chen S, Bagdasarian M, Kaufman MG, Walker ED (2007b) Characterization of strong promoters from an environmental Flavobacterium hibernum strain by using a green fluorescent protein-based reporter system. Appl Environ Microbiol 73(4):1089-1100. doi: 10.1128/AEM.01577-06
8. Chen S, Bagdasarian M, Kaufman MG, Walker ED (2007c) Organization of a partial S10 operon and its transcriptional analysis in Flavobacterium hibernum strain W22. FEMS Microbiol Lett 267(1):38-45. doi:10.1111/j.1574-6968.2006. 00543.x (Pubitemid 46066537)
9. Chen S, Kaufman MG, Bagdasarian M, Bates AK, Walker ED (2010) Development of an efficient expression system for Flavobacterium strains. Gene 458(1-2):1-10. doi: doi: 10.1016/j.gene.2010.02.006
10. Cooper AJ, Kalinowski AP, Shoemaker NB, Salyers AA (1997) Construction and characterization of a Bacteroides thetaiotaomicron recA mutant: transfer of Bacteroides integrated conjugative elements is RecA independent. J Bacteriol 179(20):6221-6227 (Pubitemid 27443900)
11. Cordova CMM, Lartigue C, Sirand-Pugnet P, Renaudin J, Cunha RAF, Blanchard A (2002) Identification of the origin of replication of the Mycoplasma pulmonis chromosome and its use in oriC replicative plasmids. J Bacteriol 184(19):5426-5435. doi: 10.1128/jb.184.19.5426-5435.2002 (Pubitemid 35024390)
12. Duret S, Andre A, Renaudin J (2005) Specific gene targeting in Spiroplasma citri: improved vectors and production of unmarked mutations using site-specific recombination. Microbiology 151(Pt 8):2793-2803. doi: 10.1099/mic.0.28123-0 (Pubitemid 41149799)
13. Gaurivaud P, Laigret F, Verdin E, Garnier M, Bove JM (2000) Fructose operon mutants of Spiroplasma citri. Microbiology 146(Pt 9):2229-2236
14. Herrero M, de Lorenzo V, Timmis KN (1990) Transposon vectors containing non-antibiotic resistance selection markers for cloning and stable chromosomal insertion of foreign genes in gram-negative bacteria. J Bacteriol 172(11):6557-6567 (Pubitemid 20372801)
15. Ichimura M, Nakayama-Imaohji H, Wakimoto S, Morita H, Hayashi T, Kuwahara T (2010) Efficient electrotransformation of Bacteroides fragilis. Appl Environ Microbiol 76(10):3325-3332. doi: 10.1128/AEM.02420-09
16. Janis C, Lartigue C, Frey J, Wroblewski H, Thiaucourt F, Blanchard A, Sirand-Pugnet P (2005) Versatile use of oriC plasmids for functional genomics of Mycoplasma capricolum subsp. capricolum. Appl Environ Microbiol 71(6):2888-2893. doi: 10.1128/aem.71.6.2888-2893.2005 (Pubitemid 40807191)
17. Kreth J, Merritt J, Bordador C, Shi W, Qi F (2004) Transcriptional analysis of mutacin I (mutA) gene expression in planktonic and biofilm cells of Streptococcus mutans using fluorescent protein and glucuronidase reporters. Oral 10.1111/j.1399-302X.2004.00148.x (Pubitemid 38931709)
18. Kroos L, Kaiser D (1984) Construction of Tn5 lac, a transposon that fuses lacZ expression to exogenous promoters, and its introduction into Myxococcus xanthus. Proc Natl Acad Sci USA 81(18):5816-5820 (Pubitemid 14018494)
19. Lartigue C, Duret S, Garnier M, Renaudin J (2002) New plasmid vectors for specific gene targeting in Spiroplasma citri. Plasmid 48(2):149-159. doi: 10.1016/S0147-619X(02)00121-X (Pubitemid 35300806)
20. Lartigue C, Blanchard A, Renaudin J, Thiaucourt F, Sirand-Pugnet P (2003) Host specificity of mollicutes oriC plasmids: functional analysis of replication origin. Nucleic Acids Res 31(22):6610-6618 (Pubitemid 37508767)
21. Lee SW, Browning GF, Markham PF (2008) Development of a replicable oriC plasmid for Mycoplasma gallisepticum and Mycoplasma imitans, and gene disruption through homologous recombination in M. gallisepticum. Microbiology 154(Pt 9):2571-2580. doi: 10.1099/mic.0.2008/019208-0
22. Li LY, Shoemaker NB, Salyers AA (1995) Location and characteristics of the transfer region of a Bacteroides conjugative transposon and regulation of transfer genes. J Bacteriol 177(17):4992-4999
23. Martins PM, Lau IF, Bacci M, Belasque J, do Amaral AM, Taboga SR, Ferreira H (2010) Subcellular localization of proteins labeled with GFP in Xanthomonas citri ssp. citri: targeting the division septum. FEMS Microbiol Lett 310(1):76-83. doi: 10.1111/j.1574-6968.2010.02047.x
24. McBride MJ, Baker SA (1996) Development of techniques to genetically manipulate members of the genera Cytophaga, Flavobacterium, Flexibacter, and Sporocytophaga. Appl Environ Microbiol 62(8):3017-3022
25. Monteiro PB, Teixeira DC, Palma RR, Garnier M, Bove JM, Renaudin J (2001) Stable transformation of the Xylella fastidiosa citrus variegated chlorosis strain with oriC plasmids. Appl Environ Microbiol 67(5):2263-2269. doi: 10.1128/AEM.67.5.2263-2269.2001 (Pubitemid 33641415)
26. Moriya S, Atlung T, Hansen FG, Yoshikawa H, Ogasawara N (1992) Cloning of an autonomously replicating sequence (ars) from the Bacillus subtilis chromosome. Mol Microbiol 6(3):309-315
27. Rudner DZ, Pan Q, Losick RM (2002) Evidence that subcellular localization of a bacterial membrane protein is achieved by diffusion and capture. Proc Natl Acad Sci USA 99(13):8701-8706. doi: 10.1073/pnas.132235899 (Pubitemid 34693623)
28. Simon R, Priefer U, Puhler A (1983) A broad host range mobilization system for in vivo genetic engineering: transposon mutagenesis in Gram negative bacteria. Nat Biotechnol 1(9):784-791 (Pubitemid 14239484)
29. Smith DW, Yee TW, Baird C, Krishnapillai V (1991) Pseudomonad replication origins: a paradigm for bacterial origins? Mol Microbiol 5(11):2581-2587 (Pubitemid 21895990)
30. Stanier RY (1942) The Cytophaga group: a contribution to the biology of myxobacteria. Bacteriol Rev 6(3):143-196
31. Staroscik AM, Hunnicutt DW, Archibald KE, Nelson DR (2008) Development of methods for the genetic manipulation of Flavobacterium columnare. BMC Microbiol 8:115. doi: 10.1186/1471-2180-8-115
32. Valdivia RH, Falkow S (1997) Fluorescence-based isolation of bacterial genes expressed within host cells. Science 277(5334):2007-2011 (Pubitemid 27449146)
33. Walker E, Warren FL (1938) Decomposition of cellulose by Cytophaga. I. Biochem J 32(1):31-43
34. Wilson D (2009) Evidence for a novel mechanism of microbial cellulose degradation. Cellulose 16(4):723-727. doi: 10.1007/s10570-009-9326-9
35. Wilson DB (2008) Three microbial strategies for plant cell wall degradation. Ann N Y Acad Sci 1125:289-297. doi: 10.1196/annals.1419.026 (Pubitemid 351451168)
36. Xie G, Bruce DC, Challacombe JF, Chertkov O, Detter JC, Gilna P, Han CS, Lucas S, Misra M, Myers GL, Richardson P, Tapia R, Thayer N, Thompson LS, Brettin TS, Henrissat B, Wilson DB, McBride MJ (2007) Genome sequence of the cellulolytic gliding bacterium Cytophaga hutchinsonii. Appl Environ Microbiol 73(11):3536-3546. doi: 10.1128/AEM.00225-07 (Pubitemid 46871442)
37. Ye F, Renaudin J, Bove JM, Laigret F (1994) Cloning and sequencing of the replication origin (oriC) of the Spiroplasma citri chromosome and construction of autonomously replicating artificial plasmids. Curr Microbiol 29(1):23-29 (Pubitemid 24156923)
38. Zakrzewska-Czerwinska J, Majka J, Schrempf H (1995) Minimal requirements of the Streptomyces lividans 66 oriC region and its transcriptional and translational activities. J Bacteriol 177(16):4765-4771