메뉴 건너뛰기




Volumn 180, Issue 2, 2008, Pages 1167-1175

On the detection of imprinted quantitative trait loci in line crosses: Effect of linkage disequilibrium

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; DOMESTIC ANIMAL; GENE FREQUENCY; GENE LINKAGE DISEQUILIBRIUM; GENETIC LINE; GENETIC VARIABILITY; GENOME IMPRINTING; GENOTYPE; MOLECULAR EVOLUTION; PRIORITY JOURNAL; QUANTITATIVE TRAIT LOCUS; SIMULATION; ANIMAL; CROSS BREEDING; GENETIC MARKER; GENETICS; HUMAN;

EID: 58149333886     PISSN: 00166731     EISSN: 00166731     Source Type: Journal    
DOI: 10.1534/genetics.108.092551     Document Type: Article
Times cited : (20)

References (38)
  • 1
    • 0037274657 scopus 로고    scopus 로고
    • Molecular dissection of a quantitative trait locus: A phenylalanine-to-tyrosine substitution in the transmembrane domain of the bovine growth hormone receptor is associated with a major effect on milk yield and composition
    • BLOTT, S., J. J. KIM, S. MOISIO, A. SCHMIDT-KÜNTZEL, A. CORNET et al., 2003 Molecular dissection of a quantitative trait locus: a phenylalanine-to-tyrosine substitution in the transmembrane domain of the bovine growth hormone receptor is associated with a major effect on milk yield and composition. Genetics 163: 253-266.
    • (2003) Genetics , vol.163 , pp. 253-266
    • BLOTT, S.1    KIM, J.J.2    MOISIO, S.3    SCHMIDT-KÜNTZEL, A.4    CORNET, A.5
  • 2
    • 33745577150 scopus 로고    scopus 로고
    • A mutation creating a potential illegitimate microRNA target site in the myostatin gene affects muscularity in sheep
    • CLOP, A., F. MARCQ, H. TAKEDA, D. PIROTTIN, X. TORDOIR et al., 2006 A mutation creating a potential illegitimate microRNA target site in the myostatin gene affects muscularity in sheep. Nat. Genet. 38: 813-818.
    • (2006) Nat. Genet , vol.38 , pp. 813-818
    • CLOP, A.1    MARCQ, F.2    TAKEDA, H.3    PIROTTIN, D.4    TORDOIR, X.5
  • 3
    • 0028151261 scopus 로고
    • Empirical threshold values for quantitative trait mapping
    • CHURCHILL, G. A., and R. W. DOERGE, 1994 Empirical threshold values for quantitative trait mapping. Genetics 138: 963-971.
    • (1994) Genetics , vol.138 , pp. 963-971
    • CHURCHILL, G.A.1    DOERGE, R.W.2
  • 5
    • 22244468049 scopus 로고    scopus 로고
    • Identification of a missense mutation in the bovine ABCG2 gene with a major effect on the QTL on chromosome 6 affecting milk yield and composition in Holstein cattle
    • COHEN-ZINDER, M., E. SEROUSSI, D. M. LARKIN, J. J. LOOR, A. EVERTS-VAN DER WIND et al., 2005 Identification of a missense mutation in the bovine ABCG2 gene with a major effect on the QTL on chromosome 6 affecting milk yield and composition in Holstein cattle. Genome Res. 15: 936-944.
    • (2005) Genome Res , vol.15 , pp. 936-944
    • COHEN-ZINDER, M.1    SEROUSSI, E.2    LARKIN, D.M.3    LOOR, J.J.4    EVERTS-VAN DER WIND, A.5
  • 7
    • 34250335974 scopus 로고    scopus 로고
    • A statistical model for dissecting genomic imprinting through genetic mapping
    • CUI, Y., J. M. CHEVERUD and R. WU, 2007 A statistical model for dissecting genomic imprinting through genetic mapping. Genetica 130: 227-239.
    • (2007) Genetica , vol.130 , pp. 227-239
    • CUI, Y.1    CHEVERUD, J.M.2    WU, R.3
  • 8
    • 6944250526 scopus 로고    scopus 로고
    • Ectopic expression of DLK1 protein in skeletal muscle of padumnal heterozygotes causes the callipyge phenotype
    • DAVIS, E., C. H. JENSEN, H. D. SCHRODER, F. FARNIR, T. SHAY-HADFIELD et al., 2004 Ectopic expression of DLK1 protein in skeletal muscle of padumnal heterozygotes causes the callipyge phenotype. Curr. Biol. 14: 1858-1862.
    • (2004) Curr. Biol , vol.14 , pp. 1858-1862
    • DAVIS, E.1    JENSEN, C.H.2    SCHRODER, H.D.3    FARNIR, F.4    SHAY-HADFIELD, T.5
  • 10
    • 0035989448 scopus 로고    scopus 로고
    • On the detection of imprinted quantitative trait loci in experimental crosses of outbred species
    • DE KONING, D. J., H. BOVENHUIS and J. A. VAN ARENDONK, 2002 On the detection of imprinted quantitative trait loci in experimental crosses of outbred species. Genetics 161: 931-938.
    • (2002) Genetics , vol.161 , pp. 931-938
    • DE KONING, D.J.1    BOVENHUIS, H.2    VAN ARENDONK, J.A.3
  • 11
    • 34250160167 scopus 로고    scopus 로고
    • Mechanisms regulating imprinted genes in clusters
    • EDWARDS, C. A., and A. C. FERGUSON-SMITH, 2007 Mechanisms regulating imprinted genes in clusters. Curr. Opin. Cell Biol. 19: 281-289.
    • (2007) Curr. Opin. Cell Biol , vol.19 , pp. 281-289
    • EDWARDS, C.A.1    FERGUSON-SMITH, A.C.2
  • 13
    • 34047093266 scopus 로고    scopus 로고
    • Convergent evolution of genomic imprinting in plants and mammals
    • FEIL, R., and F. BERGER, 2007 Convergent evolution of genomic imprinting in plants and mammals. Trends Genet. 23: 192-199.
    • (2007) Trends Genet , vol.23 , pp. 192-199
    • FEIL, R.1    BERGER, F.2
  • 14
    • 0034532484 scopus 로고    scopus 로고
    • Mapping quantitative trait loci in complex pedigrees: A two-step variance component approach
    • GEORGE, A. W., P. M. VISSCHER and C. S. HALEY, 2000 Mapping quantitative trait loci in complex pedigrees: a two-step variance component approach. Genetics 156: 2081-2092.
    • (2000) Genetics , vol.156 , pp. 2081-2092
    • GEORGE, A.W.1    VISSCHER, P.M.2    HALEY, C.S.3
  • 15
    • 38449085591 scopus 로고    scopus 로고
    • Mapping, fine-mapping and molecular dissection of quantitative trait loci in domestic animals
    • GEORGES, M., 2007 Mapping, fine-mapping and molecular dissection of quantitative trait loci in domestic animals. Annu. Rev. Genomics Hum. Genet. 8: 131-162.
    • (2007) Annu. Rev. Genomics Hum. Genet , vol.8 , pp. 131-162
    • GEORGES, M.1
  • 16
    • 0036175484 scopus 로고    scopus 로고
    • Positional candidate cloning of a QTL in dairy cattle: Identification of a missense mutation in the bovine DGAT gene with major effect on milk yield and composition
    • GRISART, B., W. COPPIETERS, F. FARNIR, L. KARIM, C. FORD et al., 2002 Positional candidate cloning of a QTL in dairy cattle: identification of a missense mutation in the bovine DGAT gene with major effect on milk yield and composition. Genome Res. 12: 222-231.
    • (2002) Genome Res , vol.12 , pp. 222-231
    • GRISART, B.1    COPPIETERS, W.2    FARNIR, F.3    KARIM, L.4    FORD, C.5
  • 17
    • 10744231897 scopus 로고    scopus 로고
    • Genetic and functional confirmation of the causality of the DGAT1 K232A quantitative trait nucleotide in affecting milk yield and composition
    • GRISART, B., F. FARNIR, L. KARIM, N. CAMBISANO, J. J. KIM et al., 2004 Genetic and functional confirmation of the causality of the DGAT1 K232A quantitative trait nucleotide in affecting milk yield and composition. Proc. Natl. Acad. Sci. USA 101: 2398-2403.
    • (2004) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 2398-2403
    • GRISART, B.1    FARNIR, F.2    KARIM, L.3    CAMBISANO, N.4    KIM, J.J.5
  • 18
    • 45149132053 scopus 로고    scopus 로고
    • Maternal effects as the cause of parent-of-origin effects that mimic genomic imprinting
    • HAGER, R., J. M. CHEVERUD, C. ROSEMAN and J. B. WOLF, 2008 Maternal effects as the cause of parent-of-origin effects that mimic genomic imprinting. Genetics 178: 1755-1762.
    • (2008) Genetics , vol.178 , pp. 1755-1762
    • HAGER, R.1    CHEVERUD, J.M.2    ROSEMAN, C.3    WOLF, J.B.4
  • 19
    • 0028219062 scopus 로고
    • Mapping quantitative trait loci in crosses between outbred lines using least squares
    • HALEY, C. S., S. A. KNOTT and J. M. ELSEN, 1994 Mapping quantitative trait loci in crosses between outbred lines using least squares. Genetics 136: 1195-1207.
    • (1994) Genetics , vol.136 , pp. 1195-1207
    • HALEY, C.S.1    KNOTT, S.A.2    ELSEN, J.M.3
  • 20
    • 33744492858 scopus 로고    scopus 로고
    • Measuring the extent of linkage disequilibrium in commercial pig populations
    • HARMEGNIES, N., F. FARNIR, F. DAVIN, N. BUYS, M. GEORGES et al., 2006 Measuring the extent of linkage disequilibrium in commercial pig populations. Anim. Genet. 37: 225-231.
    • (2006) Anim. Genet , vol.37 , pp. 225-231
    • HARMEGNIES, N.1    FARNIR, F.2    DAVIN, F.3    BUYS, N.4    GEORGES, M.5
  • 21
    • 29244463548 scopus 로고    scopus 로고
    • Efficiency of population structures for mapping of Mendelian and imprinted quantitative trait loci in outbred pigs using variance component methods
    • HEUVEN, H.C.M., H. BOVENHUIS, L. L. G. JANSS and J. A. M. VAN ARENDONK, 2005 Efficiency of population structures for mapping of Mendelian and imprinted quantitative trait loci in outbred pigs using variance component methods. Genet. Sel. Evol. 37: 635-655.
    • (2005) Genet. Sel. Evol , vol.37 , pp. 635-655
    • HEUVEN, H.C.M.1    BOVENHUIS, H.2    JANSS, L.L.G.3    VAN ARENDONK, J.A.M.4
  • 22
    • 0032909094 scopus 로고    scopus 로고
    • A paternally expressed QTL affecting skeletal and cardiac muscle mass in pigs maps to the IGF2 locus
    • JEON, J. T., O. CARLBORG, A. TORNSTEN, E. GIUFFRA, V. AMARGER et al., 1999 A paternally expressed QTL affecting skeletal and cardiac muscle mass in pigs maps to the IGF2 locus. Nat. Genet. 21: 157-158.
    • (1999) Nat. Genet , vol.21 , pp. 157-158
    • JEON, J.T.1    CARLBORG, O.2    TORNSTEN, A.3    GIUFFRA, E.4    AMARGER, V.5
  • 23
    • 18844429813 scopus 로고    scopus 로고
    • Estimation of the extent of linkage disequilibrium in seven regions of the porcine genome
    • JUNGERIUS, B. J., J. GU, R. P. CROOIJMANS, J. J. VAN DER POEL, M. A. GROENEN et al., 2005 Estimation of the extent of linkage disequilibrium in seven regions of the porcine genome. Anim. Biotechnol. 16: 41-54.
    • (2005) Anim. Biotechnol , vol.16 , pp. 41-54
    • JUNGERIUS, B.J.1    GU, J.2    CROOIJMANS, R.P.3    VAN DER POEL, J.J.4    GROENEN, M.A.5
  • 24
    • 17744406714 scopus 로고    scopus 로고
    • Multiple marker mapping of quantitative trait loci in a cross between outbred wild boar and large white pigs
    • KNOTT, S. A., L. MARKLUND, C. S. HALEY, K. ANDERSSON, W. DAVIES et al., 1998 Multiple marker mapping of quantitative trait loci in a cross between outbred wild boar and large white pigs. Genetics 149: 1069-1080.
    • (1998) Genetics , vol.149 , pp. 1069-1080
    • KNOTT, S.A.1    MARKLUND, L.2    HALEY, C.S.3    ANDERSSON, K.4    DAVIES, W.5
  • 25
    • 28644447707 scopus 로고    scopus 로고
    • Genome sequence, comparative analysis and haplotype structure of the domestic dog
    • LINDBLAD-TOH, K., C. M. WADE, T. S. MIKKELSEN, E. K. KARLSSON, D. B. JAFFE et al., 2005 Genome sequence, comparative analysis and haplotype structure of the domestic dog. Nature 438: 803-819.
    • (2005) Nature , vol.438 , pp. 803-819
    • LINDBLAD-TOH, K.1    WADE, C.M.2    MIKKELSEN, T.S.3    KARLSSON, E.K.4    JAFFE, D.B.5
  • 26
    • 22344440797 scopus 로고    scopus 로고
    • Genome-wide prediction of imprinted murine genes
    • LUEDI, P. P., A. J. HARTEMINK and R. L. JIRTLE, 2005 Genome-wide prediction of imprinted murine genes. Genome Res. 15: 875-884.
    • (2005) Genome Res , vol.15 , pp. 875-884
    • LUEDI, P.P.1    HARTEMINK, A.J.2    JIRTLE, R.L.3
  • 27
    • 37249059981 scopus 로고    scopus 로고
    • Computational and experimental identification of novel human imprinted genes
    • LUEDI, P. P., F. S. DIETRICH, J. R. WEIDMAN, J. M. BOSKO, R.L. JIRTLE et al., 2007 Computational and experimental identification of novel human imprinted genes. Genome Res. 17: 1723-1730.
    • (2007) Genome Res , vol.17 , pp. 1723-1730
    • LUEDI, P.P.1    DIETRICH, F.S.2    WEIDMAN, J.R.3    BOSKO, J.M.4    JIRTLE, R.L.5
  • 29
    • 0032931894 scopus 로고    scopus 로고
    • An imprinted QTL with major effect on muscle mass and fat deposition maps to the IGF2 locus in pigs
    • NEZER, C., L. MOREAU, B. BROUWERS, W. COPPIETERS, J. DETILLEUX et al., 1999 An imprinted QTL with major effect on muscle mass and fat deposition maps to the IGF2 locus in pigs. Nat. Genet. 21: 155-156.
    • (1999) Nat. Genet , vol.21 , pp. 155-156
    • NEZER, C.1    MOREAU, L.2    BROUWERS, B.3    COPPIETERS, W.4    DETILLEUX, J.5
  • 30
    • 1942421741 scopus 로고    scopus 로고
    • Linkage disequilibrium in the domesticated pig
    • NSENGIMANA, J., P. BARET, C. S. HALEY and P. M. VISSCHER, 2004 Linkage disequilibrium in the domesticated pig. Genetics 166: 1395-1404.
    • (2004) Genetics , vol.166 , pp. 1395-1404
    • NSENGIMANA, J.1    BARET, P.2    HALEY, C.S.3    VISSCHER, P.M.4
  • 31
    • 17744391429 scopus 로고    scopus 로고
    • Co-evolution of X-chromosome inactivation and imprinting in mammals
    • REIK, W., and A. LEWIS, 2005 Co-evolution of X-chromosome inactivation and imprinting in mammals. Nat. Rev. Genet. 6: 403-410.
    • (2005) Nat. Rev. Genet , vol.6 , pp. 403-410
    • REIK, W.1    LEWIS, A.2
  • 32
    • 33746405730 scopus 로고    scopus 로고
    • Linkage disequilibrium on the bovine X chromosome: Characterization and use in quantitative trait locus mapping
    • SANDOR, C., F. FARNIR, S. HANSOUL, W. COPPIETERS, T. MEUWISSEN et al., 2006 Linkage disequilibrium on the bovine X chromosome: characterization and use in quantitative trait locus mapping. Genetics 173: 1777-1786.
    • (2006) Genetics , vol.173 , pp. 1777-1786
    • SANDOR, C.1    FARNIR, F.2    HANSOUL, S.3    COPPIETERS, W.4    MEUWISSEN, T.5
  • 33
    • 10944237840 scopus 로고    scopus 로고
    • Extensive and breed-specific linkage disequilibrium in Canis familiaris
    • SUTTER, N. B., M. A. EBERLE, H. G. PARKER, B. J. PULLAR, E. F. KIRKNESS et al., 2004 Extensive and breed-specific linkage disequilibrium in Canis familiaris. Genome Res. 14: 2388-2396.
    • (2004) Genome Res , vol.14 , pp. 2388-2396
    • SUTTER, N.B.1    EBERLE, M.A.2    PARKER, H.G.3    PULLAR, B.J.4    KIRKNESS, E.F.5
  • 35
    • 13844320215 scopus 로고    scopus 로고
    • Fine mapping of a QTL for intramuscular fat on porcine chromosome 6 using combined linkage and linkage disequilibrium mapping
    • ULEBERG, E., I. S. WIDERøE, E. GRINDFLEK, J. SZYDA, S. LIEN et al., 2005 Fine mapping of a QTL for intramuscular fat on porcine chromosome 6 using combined linkage and linkage disequilibrium mapping. J. Anim. Breed. Genet. 122: 1-6.
    • (2005) J. Anim. Breed. Genet , vol.122 , pp. 1-6
    • ULEBERG, E.1    WIDERøE, I.S.2    GRINDFLEK, E.3    SZYDA, J.4    LIEN, S.5
  • 36
    • 0242363235 scopus 로고    scopus 로고
    • A regulatory mutation in IGF2 causes a major QTL effect on muscle growth in the pig
    • VAN LAERE, A. S., M. NGUYEN, M. BRAUNSCHWEIG, C. NEZER, C. COLLETTE et al., 2003 A regulatory mutation in IGF2 causes a major QTL effect on muscle growth in the pig. Nature 425: 832-836.
    • (2003) Nature , vol.425 , pp. 832-836
    • VAN LAERE, A.S.1    NGUYEN, M.2    BRAUNSCHWEIG, M.3    NEZER, C.4    COLLETTE, C.5
  • 37
    • 0038407464 scopus 로고    scopus 로고
    • What good is genomic imprinting: The function of parent-specific gene expression
    • WILKINS, J. F., and D. HAIG, 2003 What good is genomic imprinting: the function of parent-specific gene expression. Nat. Rev. Genet. 4: 359-368.
    • (2003) Nat. Rev. Genet , vol.4 , pp. 359-368
    • WILKINS, J.F.1    HAIG, D.2
  • 38
    • 46249115442 scopus 로고    scopus 로고
    • WOLF, J. B., J. M. CHEVERUD, C. ROSEMAN and R. HAGER, 2008 Genome-wide analysis reveals a complex pattern of genomic imprinting in mice. PLoS Genet. 4: e1000091.
    • WOLF, J. B., J. M. CHEVERUD, C. ROSEMAN and R. HAGER, 2008 Genome-wide analysis reveals a complex pattern of genomic imprinting in mice. PLoS Genet. 4: e1000091.


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.