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Volumn 7, Issue 1, 2012, Pages

Bacterial community assembly and turnover within the intestines of developing zebrafish

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CONTROLLED STUDY; DEVELOPMENTAL STAGE; FEMALE; HOST PATHOGEN INTERACTION; INTESTINE FLORA; LARVA; MALE; MICROBIAL COMMUNITY; MOLECULAR ECOLOGY; NONHUMAN; SPECIES COMPOSITION; SPECIES HABITAT; SPECIES RICHNESS; TURNOVER TIME; ZEBRA FISH; ANIMAL; BACTERIUM; GROWTH, DEVELOPMENT AND AGING; INTESTINE; MICROBIOLOGY;

EID: 84856008070     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0030603     Document Type: Article
Times cited : (82)

References (52)
  • 1
    • 33748468927 scopus 로고    scopus 로고
    • Distinct signals from the microbiota promote different aspects of zebrafish gut differentiation
    • Bates JM, Mittge E, Kuhlman J, Baden KN, Cheesman SE, et al. (2006) Distinct signals from the microbiota promote different aspects of zebrafish gut differentiation. Dev Biol 297: 374-386.
    • (2006) Dev Biol , vol.297 , pp. 374-386
    • Bates, J.M.1    Mittge, E.2    Kuhlman, J.3    Baden, K.N.4    Cheesman, S.E.5
  • 2
    • 8144226856 scopus 로고    scopus 로고
    • The gut microbiota as an environmental factor that regulates fat storage
    • Bäckhed F, Ding H, Wang T, Hooper LV, Koh GY, et al. (2004) The gut microbiota as an environmental factor that regulates fat storage. Proc Natl Acad Sci USA 101: 15718-15723.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 15718-15723
    • Bäckhed, F.1    Ding, H.2    Wang, T.3    Hooper, L.V.4    Koh, G.Y.5
  • 4
    • 0032935617 scopus 로고    scopus 로고
    • Influences of microbiota on intestinal immune system development
    • Cebra JJ, (1999) Influences of microbiota on intestinal immune system development. Am J Clin Nutr 69: 1046S-1051S.
    • (1999) Am J Clin Nutr , vol.69
    • Cebra, J.J.1
  • 5
    • 84856008702 scopus 로고    scopus 로고
    • Microbial community assembly and host-microbial interactions in the intestine
    • Rawls JF, (2007) Microbial community assembly and host-microbial interactions in the intestine. Pediatr Pulmonol S30: 146-148.
    • (2007) Pediatr Pulmonol , vol.S30 , pp. 146-148
    • Rawls, J.F.1
  • 6
    • 15544376418 scopus 로고    scopus 로고
    • Glycan foraging in vivo by an intestine-adapted bacterial symbiont
    • Sonnenburg JL, Xu J, Leip DD, Chen CH, Westover BP, et al. (2005) Glycan foraging in vivo by an intestine-adapted bacterial symbiont. Science 307: 1955-1959.
    • (2005) Science , vol.307 , pp. 1955-1959
    • Sonnenburg, J.L.1    Xu, J.2    Leip, D.D.3    Chen, C.H.4    Westover, B.P.5
  • 7
    • 34250633227 scopus 로고    scopus 로고
    • In vivo imaging and genetic analysis link bacterial motility and symbiosis in the zebrafish gut
    • Rawls JF, Mahowald MA, Goodman AL, Trent CM, Gordon JI, (2007) In vivo imaging and genetic analysis link bacterial motility and symbiosis in the zebrafish gut. Proc Natl Acad Sci USA 104: 7622-7627.
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 7622-7627
    • Rawls, J.F.1    Mahowald, M.A.2    Goodman, A.L.3    Trent, C.M.4    Gordon, J.I.5
  • 8
    • 1842532897 scopus 로고    scopus 로고
    • Gnotobiotic zebrafish reveal evolutionarily conserved responses to the gut microbiota
    • Rawls JF, Samuel BS, Gordon JI, (2004) Gnotobiotic zebrafish reveal evolutionarily conserved responses to the gut microbiota. Proc Natl Acad Sci USA 101: 4596-4601.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 4596-4601
    • Rawls, J.F.1    Samuel, B.S.2    Gordon, J.I.3
  • 9
    • 43149096912 scopus 로고    scopus 로고
    • Islands shaping thought in microbial ecology
    • van der Gast CJ, (2008) Islands shaping thought in microbial ecology. Adv Appl Microbiol 64: 167-182.
    • (2008) Adv Appl Microbiol , vol.64 , pp. 167-182
    • van der Gast, C.J.1
  • 10
    • 0000863467 scopus 로고
    • Subdivision of nature reserves and the maintenance of species diversity
    • Gilpin ME, Diamond JM, (1980) Subdivision of nature reserves and the maintenance of species diversity. Nature 285: 567-568.
    • (1980) Nature , vol.285 , pp. 567-568
    • Gilpin, M.E.1    Diamond, J.M.2
  • 11
    • 0000692244 scopus 로고
    • Should nature reserves be large or small?
    • Higgs AJ, Usher MB, (1980) Should nature reserves be large or small? Nature 285: 568-569.
    • (1980) Nature , vol.285 , pp. 568-569
    • Higgs, A.J.1    Usher, M.B.2
  • 12
    • 0020375763 scopus 로고
    • Refuge design and island biogeographic theory: Effects of fragmentation
    • Simberloff D, Abele LG, (1982) Refuge design and island biogeographic theory: Effects of fragmentation. Am Nat 120: 41-50.
    • (1982) Am Nat , vol.120 , pp. 41-50
    • Simberloff, D.1    Abele, L.G.2
  • 13
    • 0002265705 scopus 로고
    • Species and area
    • Arrhenius O, (1921) Species and area. J Ecol 9: 95-99.
    • (1921) J Ecol , vol.9 , pp. 95-99
    • Arrhenius, O.1
  • 14
    • 0001103434 scopus 로고
    • Time and space and the variation of species
    • Preston FW, (1960) Time and space and the variation of species. Ecology 41: 611-627.
    • (1960) Ecology , vol.41 , pp. 611-627
    • Preston, F.W.1
  • 15
    • 0003683185 scopus 로고
    • Species Diversity in Space and Time
    • Cambridge, Cambridge University Press
    • Rosenzweig ML, (1995) Species Diversity in Space and Time. Cambridge Cambridge University Press.
    • (1995)
    • Rosenzweig, M.L.1
  • 19
    • 78650777547 scopus 로고    scopus 로고
    • Spatial scaling of arbuscular mycorrhizal fungal diversity is affected by farming practice
    • van der Gast CJ, Gosling P, Tiwari B, Bending GD, (2011) Spatial scaling of arbuscular mycorrhizal fungal diversity is affected by farming practice. Environ Microbiol 13: 241-249.
    • (2011) Environ Microbiol , vol.13 , pp. 241-249
    • van der Gast, C.J.1    Gosling, P.2    Tiwari, B.3    Bending, G.D.4
  • 21
    • 77953809386 scopus 로고    scopus 로고
    • Anthropogenic disturbance affects the structure of bacterial communities
    • Ager D, Evans S, Li H, Lilley AK, van der Gast CJ, (2010) Anthropogenic disturbance affects the structure of bacterial communities. Environ Microbiol 12: 670-678.
    • (2010) Environ Microbiol , vol.12 , pp. 670-678
    • Ager, D.1    Evans, S.2    Li, H.3    Lilley, A.K.4    van der Gast, C.J.5
  • 22
    • 43449117763 scopus 로고    scopus 로고
    • Temporal scaling of bacterial taxa is influenced by both stochastic and deterministic ecological factors
    • van der Gast CJ, Ager D, Lilley AK, (2008) Temporal scaling of bacterial taxa is influenced by both stochastic and deterministic ecological factors. Environ Microbiol 10: 1411-1418.
    • (2008) Environ Microbiol , vol.10 , pp. 1411-1418
    • van der Gast, C.J.1    Ager, D.2    Lilley, A.K.3
  • 25
    • 79953750832 scopus 로고    scopus 로고
    • Balance of neutral and deterministic components in the dynamicss of sludge floc assembly
    • Ayarza JM, Erijman L, (2011) Balance of neutral and deterministic components in the dynamicss of sludge floc assembly. Microb Ecol 61: 486-495.
    • (2011) Microb Ecol , vol.61 , pp. 486-495
    • Ayarza, J.M.1    Erijman, L.2
  • 26
    • 22744439617 scopus 로고    scopus 로고
    • Island size and bacterial diversity in an archipelago of engineering machines
    • van der Gast CJ, Lilley AK, Ager D, Thompson IP, (2005) Island size and bacterial diversity in an archipelago of engineering machines. Environ Microbiol 7: 1220-1226.
    • (2005) Environ Microbiol , vol.7 , pp. 1220-1226
    • van der Gast, C.J.1    Lilley, A.K.2    Ager, D.3    Thompson, I.P.4
  • 28
    • 73949088945 scopus 로고    scopus 로고
    • Determining cystic fibrosis-affected lung microbiology: Comparison of spontaneous and serially induced sputum samples by use of terminal restriction fragment length polymorphism profiling
    • Rogers GB, Skelton S, Serisier DJ, van der Gast CJ, Bruce KD, (2010) Determining cystic fibrosis-affected lung microbiology: Comparison of spontaneous and serially induced sputum samples by use of terminal restriction fragment length polymorphism profiling. J Clin Microbiol 48: 78-86.
    • (2010) J Clin Microbiol , vol.48 , pp. 78-86
    • Rogers, G.B.1    Skelton, S.2    Serisier, D.J.3    van der Gast, C.J.4    Bruce, K.D.5
  • 29
    • 0042128300 scopus 로고    scopus 로고
    • The power of time: Spatiotemporal scaling of species diversity
    • Adler PB, Lauenroth WK, (2003) The power of time: Spatiotemporal scaling of species diversity. Ecol Lett 6: 749-756.
    • (2003) Ecol Lett , vol.6 , pp. 749-756
    • Adler, P.B.1    Lauenroth, W.K.2
  • 30
    • 0003798919 scopus 로고    scopus 로고
    • Practical statistics for field biologists
    • Chichester, John Wiley and Sons
    • Fowler J, Cohen L, Jarvis P, (1998) Practical statistics for field biologists. Chichester John Wiley and Sons.
    • (1998)
    • Fowler, J.1    Cohen, L.2    Jarvis, P.3
  • 32
    • 32944466887 scopus 로고    scopus 로고
    • Ecological and evolutionary forces shaping microbial diversity in the human intestine
    • Ley RE, Peterson DA, Gordon JI, (2006) Ecological and evolutionary forces shaping microbial diversity in the human intestine. Cell 124: 837-848.
    • (2006) Cell , vol.124 , pp. 837-848
    • Ley, R.E.1    Peterson, D.A.2    Gordon, J.I.3
  • 33
    • 78751580602 scopus 로고    scopus 로고
    • Dominant and diet-responsive groups of bacteria within the human colonic microbiota
    • Walker AW, Ince J, Duncan SH, Webster LM, Holtrop G, et al. (2011) Dominant and diet-responsive groups of bacteria within the human colonic microbiota. ISME J 5: 220-230.
    • (2011) ISME J , vol.5 , pp. 220-230
    • Walker, A.W.1    Ince, J.2    Duncan, S.H.3    Webster, L.M.4    Holtrop, G.5
  • 34
    • 33747174849 scopus 로고    scopus 로고
    • Spatial scaling of microbial biodiversity
    • Green J, Bohannan BJM, (2006) Spatial scaling of microbial biodiversity. Trends Ecol Evol 21: 501-507.
    • (2006) Trends Ecol Evol , vol.21 , pp. 501-507
    • Green, J.1    Bohannan, B.J.M.2
  • 37
    • 0002751004 scopus 로고
    • Assembly of species communities
    • In: Cody ML, Diamond JM, editors, Cambridge MA, Harvard University Press
    • Diamond JM, (1975) Assembly of species communities. In: Cody ML, Diamond JM, editors. Ecology and Evolution of Communities. Cambridge MA Harvard University Press pp. 342-444.
    • (1975) Ecology and Evolution of Communities , pp. 342-444
    • Diamond, J.M.1
  • 38
    • 0037464582 scopus 로고    scopus 로고
    • A test of the unified neutral theory of biodiversity
    • McGill BJ, (2003) A test of the unified neutral theory of biodiversity. Nature 422: 881-885.
    • (2003) Nature , vol.422 , pp. 881-885
    • McGill, B.J.1
  • 39
    • 0003942801 scopus 로고    scopus 로고
    • The unified neutral theory of biodiversity and biogeography
    • Princeton, NJ, Princeton University Press
    • Hubbell SP, (2001) The unified neutral theory of biodiversity and biogeography. Princeton, NJ Princeton University Press.
    • (2001)
    • Hubbell, S.P.1
  • 40
    • 33644843833 scopus 로고    scopus 로고
    • Quantifying the roles of immigration and chance in shaping prokaryote community structure
    • Sloan WT, Lunn M, Woodcock S, Head IM, Nee S, et al. (2006) Quantifying the roles of immigration and chance in shaping prokaryote community structure. Environ Microbiol 8: 732-740.
    • (2006) Environ Microbiol , vol.8 , pp. 732-740
    • Sloan, W.T.1    Lunn, M.2    Woodcock, S.3    Head, I.M.4    Nee, S.5
  • 41
    • 77957270949 scopus 로고    scopus 로고
    • Combined niche and neutral effects in a microbial wastewater treatment community
    • Ofiteru ID, Lunn M, Curtis TP, Wells GF, Criddle CS, et al. (2010) Combined niche and neutral effects in a microbial wastewater treatment community. Proc Natl Acad Sci USA 107: 15345-15350.
    • (2010) Proc Natl Acad Sci USA , vol.107 , pp. 15345-15350
    • Ofiteru, I.D.1    Lunn, M.2    Curtis, T.P.3    Wells, G.F.4    Criddle, C.S.5
  • 42
    • 44649122644 scopus 로고    scopus 로고
    • Developmental toxicity and alteration of gene expression in zebrafish embryos exposed to PFOS
    • Shi XJ, Du YB, Lam PKS, Wu RSS, Zhou BS, (2008) Developmental toxicity and alteration of gene expression in zebrafish embryos exposed to PFOS. Toxicol Appl Pharmacol 230: 23-32.
    • (2008) Toxicol Appl Pharmacol , vol.230 , pp. 23-32
    • Shi, X.J.1    Du, Y.B.2    Lam, P.K.S.3    Wu, R.S.S.4    Zhou, B.S.5
  • 43
    • 0035907008 scopus 로고    scopus 로고
    • Genetic analysis of digestive physiology using fluorescent phospholipid reporters
    • Farber SA, Pack M, Ho SY, Johnson LD, Wagner DS, et al. (2001) Genetic analysis of digestive physiology using fluorescent phospholipid reporters. Science 292: 1385-1388.
    • (2001) Science , vol.292 , pp. 1385-1388
    • Farber, S.A.1    Pack, M.2    Ho, S.Y.3    Johnson, L.D.4    Wagner, D.S.5
  • 44
    • 77249101479 scopus 로고    scopus 로고
    • Host-microbe interactions in the developing zebrafish
    • Kanther M, Rawls JF, (2010) Host-microbe interactions in the developing zebrafish. Curr Opin Immunol 22: 10-19.
    • (2010) Curr Opin Immunol , vol.22 , pp. 10-19
    • Kanther, M.1    Rawls, J.F.2
  • 45
    • 74349087302 scopus 로고    scopus 로고
    • Caloric needs of detritivorous gizzard shad Dorosoma cepedianum are met with sediment bacterial and algal biomass
    • Smoot JC, Findlay RH, (2010) Caloric needs of detritivorous gizzard shad Dorosoma cepedianum are met with sediment bacterial and algal biomass. Aquat Biol 8: 105-114.
    • (2010) Aquat Biol , vol.8 , pp. 105-114
    • Smoot, J.C.1    Findlay, R.H.2
  • 46
    • 74049121905 scopus 로고    scopus 로고
    • Fishing for intestinal cancer models: Unraveling gastrointestinal homeostasis and tumorigenesis in zebrafish
    • Faro A, Boj SF, Clevers H, (2009) Fishing for intestinal cancer models: Unraveling gastrointestinal homeostasis and tumorigenesis in zebrafish. Zebrafish 6: 361-376.
    • (2009) Zebrafish , vol.6 , pp. 361-376
    • Faro, A.1    Boj, S.F.2    Clevers, H.3
  • 47
    • 0027460328 scopus 로고
    • Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
    • Muyzer G, de Waal EC, Uitterlinden AG, (1993) Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl Environ Microbiol 59: 695-700.
    • (1993) Appl Environ Microbiol , vol.59 , pp. 695-700
    • Muyzer, G.1    de Waal, E.C.2    Uitterlinden, A.G.3
  • 48
    • 38849103564 scopus 로고    scopus 로고
    • Spatiotemporal heterogeneity of plankton communities in Lake Donghu, China, as revealed by PCR-denaturing gradient gel electrophoresis and its relation to biotic and abiotic factors
    • Yu YH, Yan QY, Feng WS, (2008) Spatiotemporal heterogeneity of plankton communities in Lake Donghu, China, as revealed by PCR-denaturing gradient gel electrophoresis and its relation to biotic and abiotic factors. FEMS Microbiol Ecol 63: 328-337.
    • (2008) FEMS Microbiol Ecol , vol.63 , pp. 328-337
    • Yu, Y.H.1    Yan, Q.Y.2    Feng, W.S.3
  • 49
    • 0003950966 scopus 로고    scopus 로고
    • Modern statistics for the life sciences
    • Oxford, Oxford University Press
    • Grafen A, Hails R, (2006) Modern statistics for the life sciences. Oxford Oxford University Press.
    • (2006)
    • Grafen, A.1    Hails, R.2
  • 50
    • 0000405946 scopus 로고
    • Measurement of faunal similarity in paleontology
    • Raup DM, Crick RE, (1979) Measurement of faunal similarity in paleontology. J Paleontol 53: 1213-1227.
    • (1979) J Paleontol , vol.53 , pp. 1213-1227
    • Raup, D.M.1    Crick, R.E.2
  • 51
    • 0029730367 scopus 로고    scopus 로고
    • Biogeography of Indo-Pacific larger foraminifera and scleractinian corals: A probabilistic approach to estimating taxonomic diversity, faunal similarity, and sampling bias
    • Belasky P, (1996) Biogeography of Indo-Pacific larger foraminifera and scleractinian corals: A probabilistic approach to estimating taxonomic diversity, faunal similarity, and sampling bias. Paleogeogr Paleoclimatol Paleoecol 122: 119-141.
    • (1996) Paleogeogr Paleoclimatol Paleoecol , vol.122 , pp. 119-141
    • Belasky, P.1
  • 52
    • 0037445316 scopus 로고    scopus 로고
    • Composition and diversity of ammonia-oxidising bacterial communities in wastewater treatment reactors of different designtreating identical wastewater
    • Rowan AK, Snape JR, Fearnside D, Barer MR, Curtis TP, et al. (2003) Composition and diversity of ammonia-oxidising bacterial communities in wastewater treatment reactors of different designtreating identical wastewater. FEMS Microbiol Ecol 43: 195-206.
    • (2003) FEMS Microbiol Ecol , vol.43 , pp. 195-206
    • Rowan, A.K.1    Snape, J.R.2    Fearnside, D.3    Barer, M.R.4    Curtis, T.P.5


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