A systems-biology approach to yeast actin cables

Advances in Experimental Medicine and Biology

Volumn 736, Issue , 2012, Pages 325-335

  Drake, Tyler ^a   Yusuf, Eddy ^b   Vavylonis, Dimitrios ^a  

^a LEHIGH UNIVERSITY   (United States)

^b Surya College of Education   (Indonesia)

Author keywords

[No Author keywords available]

Indexed keywords

ACTIN; FUNGAL PROTEIN; PROTEIN BNI1P; PROTEIN BNR1P; PROTEIN FOR3P; UNCLASSIFIED DRUG;

ACTIN CABLE; ACTIN FILAMENT; ACTIN POLYMERIZATION; ARTICLE; CELL KINETICS; CELLULAR DISTRIBUTION; CYTOPLASM; MEMBRANE BINDING; MOLECULAR IMAGING; NONHUMAN; PRIORITY JOURNAL; PROTEIN ASSEMBLY; PROTEIN CROSS LINKING; PROTEIN FUNCTION; PROTEIN INTERACTION; PROTEIN TRANSPORT; QUANTITATIVE ANALYSIS; SYSTEMS BIOLOGY; YEAST; YEAST CELL;

ACTINS; CELL CYCLE PROTEINS; CYTOPLASM; FUNGAL PROTEINS; KINETICS; MODELS, BIOLOGICAL; PROTEIN MULTIMERIZATION; SACCHAROMYCES CEREVISIAE; SCHIZOSACCHAROMYCES; SIGNAL TRANSDUCTION; SPECIES SPECIFICITY; SYSTEMS BIOLOGY; YEASTS;

EID: 84855978488     PISSN: 00652598     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-4419-7210-1_19     Document Type: Article

References (46)

1. Pollard TD, Cooper JA (2009) Actin, a central player in cell shape and movement. Science 326: 1208-1212
2. Shaevitz JW, Gitai Z (2010) The structure and function of bacterial actin homologs. Cold Spring Harb Perspect Biol 2 (9): a000364
3. Moseley JB, Goode BL (2006) The yeast actin cytoskeleton: from cellular function to biochemical mechanism. Microbiol Mol Biol Rev 70: 605-645 (Pubitemid 44484687)
4. Kovar DR, Sirotkin V, Lord M (2011) Three's company: the fission yeast actin cytoskeleton. Trends Cell Biol 21: 177-187
5. Drake T, Vavylonis D (2010) Cytoskeletal dynamics in fission yeast: a review of models for polarization and division. HFSP J 4: 122-130
6. Kovar DR, Pollard TD (2004) Insertional assembly of actin filament barbed ends in association with formins produces piconewton forces. Proc Natl Acad Sci USA 101: 14725-14730 (Pubitemid 39410742)
7. Vavylonis D, Kovar DR, O'Shaughnessy B, Pollard TD (2006) Model of formin-associated actin filament elongation. Mol Cell 21: 455-466 (Pubitemid 43228002)
8. Mizuno H, Higashida C, Yuan Y, Ishizaki T, Narumiya S, Watanabe N (2011) Rotationalmovement of the formin mDia1 along the double helical strand of an actin filament. Science 331: 80-83
9. Wu JQ, Pollard TD (2005) Counting cytokinesis proteins globally and locally in fission yeast. Science 310: 310-314 (Pubitemid 41457196)
10. Joglekar AP, Bouck DC, Molk JN, Bloom KS, Salmon ED (2006) Molecular architecture of a kinetochore-microtubule attachment site. Nat Cell Biol 8: 581-585 (Pubitemid 43827350)
11. Sauer U, Heinemann M, Zamboni N (2007) Getting closer to the whole picture. Science 316: 550-551 (Pubitemid 46683128)
12. Amberg DC (1998) Three-dimensional imaging of the yeast actin cytoskeleton through the budding cell cycle. Mol Biol Cell 9: 3259-3262 (Pubitemid 28551028)
13. Buttery SM, Yoshida S, Pellman D (2007) Yeast Formins Bni1 and Bnr1 utilize different modes of cortical interaction during the assembly of actin cables. Mol Biol Cell 18: 1826-1838 (Pubitemid 46717563)
14. Martin SG, Chang F (2006) Dynamics of the formin for3p in actin cable assembly. Curr Biol 16: 1161-1170 (Pubitemid 43867291)
15. Yang H, Pon LA (2002) Actin cable dynamics in budding yeast. Proc Natl Acad Sci USA 99: 751-756 (Pubitemid 34106582)
16. Yu JH, Crevenna AH, Bettenbhl M, Freisinger T, Wedlich-Söldner R (2011) Cortical actin dynamics driven by formins and myosin V. J Cell Sci 124: 1533-1541
17. Okada K, Ravi H, Smith EM, Goode BL (2003) Aip1 and cofilin promote rapid turnover of yeast actin patches and cables: a coordinated mechanism for severing and capping filaments. Mol Biol Cell 17: 2855-2868 (Pubitemid 43993492)
18. Wang H, Vavylonis D (2008) Model of For3p-mediated actin cable assembly in fission yeast. PLoS ONE 3: e4078
19. Kovar DR, Harris ES, Mahaffy R, Higgs HN, Pollard TD (2006) Control of the assembly of ATP- and ADP-actin by formins and profilin. Cell 124: 423-435 (Pubitemid 43121988)
20. Paul A, Pollard T (2008) The role of the FH1 domain and profilin in formin-mediated actinfilament elongation and nucleation. Curr Biol 18: 9-19
21. Gao L, Bretscher A (2008) Analysis of unregulated formin activity reveals how yeast can balance F-actin assembly between different microfilament-based organizations. Mol Biol Cell 19: 1474-1484 (Pubitemid 351805101)
22. Evangelista M, Pruyne D, Amberg DC, Boone C, Bretscher A (2002) Formins direct Arp2/3-independent actin filament assembly to polarize cell growth in yeast. Nat Cell Biol 4: 260-269
23. Sagot I, Klee SK, Pellman D (2002) Yeast formins regulate cell polarity by controlling the assembly of actin cables. Nat Cell Biol 4: 42-50 (Pubitemid 34071979)
24. Huckaba TM, Lipkin T, Pon LA (2006) Roles of type II myosin and a tropomyosin isoform in retrograde actin flow in budding yeast. J Cell Biol 175: 957-969 (Pubitemid 44969201)
25. Skau CT, Kovar DR (2010) Fimbrin and tropomyosin competition regulates endocytosis and cytokinesis kinetics in fission yeast. Curr Biol 20: 1415-1422
26. Toshima JY, Toshima J, Kaksonen M, Martin AC, King DS, Drubin DG (2006) Spatial dynamics of receptor-mediated endocytic trafficking in budding yeast revealed by using fluorescent alpha-factor derivatives. Proc Natl Acad Sci USA 103: 5793-5798
27. Li H, Shen T, Smith MB, Fujiwara I, Vavylonis D, X Huang C (2009) Automated actin filament segmentation, tracking, and tip elongation measurements based on open active contour models. In: ISBI'09: Proceedings of the Sixth IEEE international conference on symposium on biomedical imaging, 1302-1305
28. Smith MB, Li H, Shen T, Huang X, Yusuf E, Vavylonis D (2010) Segmentation and tracking of cytoskeletal filaments using open active contours. Cytoskeleton 67: 693-705
29. Xu T, Li H, Shen T, Ojkic N, Vavylonis D, X Huang C (2011) Extraction and analysis of actin networks based on open active contour models. In: ISBI'11: Proceedings of the sixth IEEE international conference on symposium on biomedical imaging, 1334-1340
30. Riedl J, Crevenna AH, Kessenbrock K, Yu JH, Neukirchen D, Bista M, Bradke F, Jenne D, Holak TA, Werb Z, Sixt M, Wedlich-Söldner R (2008) Lifeact: a versatile marker to visualize F-actin. Nat Methods 5: 605-607 (Pubitemid 351911864)
31. Bicek AD, Tuzel E, Demtchouk A, Uppalapati M, Hancock WO, Kroll DM, Odde DJ (2009) Anterograde microtubule transport drives microtubule bending in LLC-PK1 epithelial cells. Moll Cell Biol 20: 2943-2953
32. Brangwynne CP, Koenderink GH, MacKintosh FC, Weitz DA (2008) Nonequilibrium microtubule fluctuations in a model cytoskeleton. Phys Rev Lett 100: 118104
33. Huckaba TM, Gay AC, Pantalena LF, Yang HC, Pon LA (2004) Live cell imaging of the assembly, disassembly, and actin cable-dependent movement of endosomes and actin patches in the budding yeast, Saccharomyces cerevisiae. J Cell Biol 167: 519-530 (Pubitemid 39489059)
34. Brangwynne CP, MacKintosh FC, Weitz DA (2007) Force fluctuations and polymerization dynamics of intracellular microtubules. Proc Natl Acad Sci USA 104: 16128-16133 (Pubitemid 350099373)
35. Wagner F, Latanzi G, Frey E (2007) Conformations of confined biopolymers. Phys Rev E 75: 050902 (R)
36. Bathe M, Heussinger C, Claessens MMAE, Bausch AR, Frey E (2008) Cytoskeletal bundle mechanics. Biophys J 94: 2955-2964
37. Wang B, Guan J, Anthony SM, Bae SC, Schweizer KS, Granick S (2010) Confining potential when a biopolymer filament reptates. Phys Rev Lett 104: 118301
38. Eldar A, Dorfman R, Weiss D, Ashe H, Shilo BZ, Barkai N (2002) Robustness of the BMP morphogen gradient in Drosophila embryonic patterning. Nature 419: 304-308
39. Pollard TD,Wu JQ (2010) Understanding cytokinesis: lessons from fission yeast. Nat Rev Mol Cell Biol 11: 149-155
40. Staiger CJ, Sheahan MB, Khurana P, Wang X, McCurdy DW, Blanchoin L (2009) Actin filament dynamics are dominated by rapid growth and severing activity in the Arabidopsis cortical array. J Cell Biol 184: 269-280
41. Smertenko AP, Deeks MJ, Hussey PJ (2010) Strategies of actin reorganisation in plant cells. J Cell Sci 123: 3019-3028
42. Vidali L, van Gisbergen PAC, Gurin C, Franco P, LiM, Burkart GM, Augustine RC, Blanchoin L, Bezanilla M (2009) Rapid formin-mediated actin-filament elongation is essential for polarized plant cell growth. Proc Natl Acad Sci USA 106: 13341-13346
43. Coffman VC, Nile AH, Lee IJ, Liu H,Wu JQ (2009) Roles of Formin Nodes andMyosinMotor Activity in Mid1p-dependent Contractile-Ring Assembly during Fission Yeast Cytokinesis. Mol Biol Cell 20: 5195-5210
44. Yonetani A, Chang F (2010) Regulation of cytokinesis by the formin cdc12p. Curr Biol 20: 561-566
45. Kamasaki T, Osumi M, Mabuchi I (2007) Three-dimensional arrangement of F-actin in the contractile ring of fission yeast. J Cell Biol 178: 765-771 (Pubitemid 47347362)
46. Vavylonis D, Wu JQ, Hao S, O'Shaughnessy B, Pollard TD (2008) Assembly mechanism of the contractile ring for cytokinesis by fission yeast. Science 319: 97-100