메뉴 건너뛰기




Volumn 736, Issue , 2012, Pages 461-475

Formal methods for checking the consistency of biological models

Author keywords

[No Author keywords available]

Indexed keywords

REAGENT;

EID: 84855966745     PISSN: 00652598     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-4419-7210-1_27     Document Type: Article
Times cited : (7)

References (31)
  • 5
    • 4444382239 scopus 로고    scopus 로고
    • Formal molecular biology
    • Danos V, Laneve C (2004) Formal molecular biology. Theor Comput Sci 325(1):69-110
    • (2004) Theor Comput Sci , vol.325 , Issue.1 , pp. 69-110
    • Danos, V.1    Laneve, C.2
  • 6
    • 0035888407 scopus 로고    scopus 로고
    • Application of a stochastic name-passing calculus to representation and simulation of molecular processes
    • DOI 10.1016/S0020-0190(01)00214-9, PII S0020019001002149
    • Priami C, Regev A, Silverman W, Shapiro E (2001) Application of a stochastic name-passing calculus to representation and simulation of molecular processes. Inf Process Lett 80(1):25-31 (Pubitemid 32833107)
    • (2001) Information Processing Letters , vol.80 , Issue.1 , pp. 25-31
    • Priami, C.1    Regev, A.2    Shapiro, E.3    Silverman, W.4
  • 7
    • 65549101937 scopus 로고    scopus 로고
    • Bio-PEPA: A framework for the modelling and analysis of biological systems
    • Ciocchetta F, Hillston J (2009) Bio-PEPA: a Framework for the Modelling and Analysis of Biological Systems. Theor Comput Sci 410(33-34):3065-3084
    • (2009) Theor Comput Sci , vol.410 , Issue.33-34 , pp. 3065-3084
    • Ciocchetta, F.1    Hillston, J.2
  • 9
    • 33645429016 scopus 로고
    • Exact stochastic simulation of coupled chemical reactions
    • Gillespie DT (1977) Exact stochastic simulation of coupled chemical reactions. J Phys Chem 81(25):2340-2361
    • (1977) J Phys Chem , vol.81 , Issue.25 , pp. 2340-2361
    • Gillespie, D.T.1
  • 12
    • 77951956151 scopus 로고    scopus 로고
    • Snoopy, a unifying Petri net framework to investigate biomolecular networks
    • Rohr C, Marwan W, Heiner M (2010) Snoopy, a unifying Petri net framework to investigate biomolecular networks. Bioinformatics 26(7):974-975
    • (2010) Bioinformatics , vol.26 , Issue.7 , pp. 974-975
    • Rohr, C.1    Marwan, W.2    Heiner, M.3
  • 13
    • 84873068670 scopus 로고    scopus 로고
    • Math Works MATLAB (2011) http://www.mathworks.com/.
    • Math Works MATLAB , vol.2011
  • 14
    • 33747877324 scopus 로고    scopus 로고
    • BIOCHAM: An environment for modeling biological systems and formalizing experimental knowledge
    • DOI 10.1093/bioinformatics/btl172
    • Calzone L, Fages F, Soliman S (2006) BIOCHAM: an environment for modeling biological systems and formalizing experimental knowledge. Bioinformatics 22(14):1805-1807 (Pubitemid 44288351)
    • (2006) Bioinformatics , vol.22 , Issue.14 , pp. 1805-1807
    • Calzone, L.1    Fages, F.2    Soliman, S.3
  • 15
    • 0036300225 scopus 로고    scopus 로고
    • Modelling biological processes using workflow and Petri Net models
    • Peleg M, Yeh I, Altman R (2002) Modeling biological processes usingWorkflow and Petri Net models. Bioinformatics 18(6):825-837 (Pubitemid 34727643)
    • (2002) Bioinformatics , vol.18 , Issue.6 , pp. 825-837
    • Peleg, M.1    Yeh, I.2    Altman, R.B.3
  • 18
    • 70450186421 scopus 로고    scopus 로고
    • Qualitative and quantitative analysis of a Bio-PEPA model of the Gp130/JAK/STAT signalling pathway
    • Guerriero ML (2009) Qualitative and quantitative analysis of a Bio-PEPA model of the Gp130/JAK/STAT signalling pathway. Trans Comput Syst Biol XI 5750:90-115
    • (2009) Trans Comput Syst Biol XI , vol.5750 , pp. 90-115
    • Guerriero, M.L.1
  • 19
    • 26444499465 scopus 로고    scopus 로고
    • On statistical model checking of stochastic systems
    • Computer Aided Verification: 17th International Conference, CAV 2005. Proceedings
    • Sen K, Viswanathan M, Agha G (2005) On statistical model checking of stochastic systems. In: Proc computer aided verification (Lecture notes in computer science), vol 3576. Springer- Verlag, Berlin Heidelberg, Germany, pp 266-280 (Pubitemid 41431739)
    • (2005) Lecture Notes in Computer Science , vol.3576 , pp. 266-280
    • Sen, K.1    Viswanathan, M.2    Agha, G.3
  • 20
    • 84855207965 scopus 로고    scopus 로고
    • Statistical probabilistic model checking with a focus on time-bounded properties
    • DOI 10.1016/j.ic.2006.05.002, PII S0890540106000678
    • Younes HLS, Simmons RG (2006) Statistical probabilistic model checking with a focus on time-bounded properties. Inf Comput 204(9):1368-1409 (Pubitemid 44279948)
    • (2006) Information and Computation , vol.204 , Issue.9 , pp. 1368-1409
    • Younes, H.L.S.1    Simmons, R.G.2
  • 22
    • 67349140728 scopus 로고    scopus 로고
    • Automated trace analysis of discrete-event system models
    • Kemper P, Tepper C (2009) Automated trace analysis of discrete-event system models. IEEE Trans Software Eng 35(2):195-208
    • (2009) IEEE Trans Software Eng , vol.35 , Issue.2 , pp. 195-208
    • Kemper, P.1    Tepper, C.2
  • 26
    • 79953199698 scopus 로고    scopus 로고
    • A semantic equivalence for Bio-PEPA based on discretisation of continuous values
    • Galpin V, Hillston J (2011) A semantic equivalence for Bio-PEPA based on discretisation of continuous values. Theor Comput Sci 412(21):2142-2161
    • (2011) Theor Comput Sci , vol.412 , Issue.21 , pp. 2142-2161
    • Galpin, V.1    Hillston, J.2
  • 27
    • 84855961000 scopus 로고    scopus 로고
    • Equivalences for a biological process algebra
    • DOI 10.1016/j.tcs.2011.07.006
    • Galpin V (2011) Equivalences for a biological process algebra. Theor Comput Sci412(43):6058-6082, DOI 10.1016/j.tcs.2011.07.006
    • (2011) Theor Comput Sci412 , Issue.43 , pp. 6058-6082
    • Galpin, V.1
  • 28
    • 0036212767 scopus 로고    scopus 로고
    • Computational modeling of the dynamics of the MAP kinase cascade activated by surface and internalized EGF receptors
    • Schoeberl B, Eichler-Jonsson C, Gilles ED, Muller G (2002) Computational modeling of the dynamics of the MAP kinase cascade activated by surface and internalized EGF receptors. Nat Biotechnol 20:270-375
    • (2002) Nat Biotechnol , vol.20 , pp. 270-375
    • Schoeberl, B.1    Eichler-Jonsson, C.2    Gilles, E.D.3    Muller, G.4
  • 29
    • 0242541682 scopus 로고    scopus 로고
    • Shc-dependent pathway is redundant but dominant in MAPK cascade activation by EGF receptors: A modeling inference
    • DOI 10.1016/S0014-5793(03)01174-8
    • Gong Y, Zhao X (2003) Shc-dependent pathway is redundant but dominant in MAPK cascade activation by EGF receptors: a modeling inference. FEBS Lett 554:467-472 (Pubitemid 37412533)
    • (2003) FEBS Letters , vol.554 , Issue.3 , pp. 467-472
    • Gong, Y.1    Zhao, X.2
  • 31


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.