-
1
-
-
79951642121
-
Verification and testing of biological models
-
December 2010
-
Clark A, Gilmore S, Hillston J, Kemper P (2010) Verification and testing of biological models. In: Proc winter simulation conference (WSC), December 2010, pp 620-630
-
(2010)
Proc Winter Simulation Conference (WSC
, pp. 620-630
-
-
Clark, A.1
Gilmore, S.2
Hillston, J.3
Kemper, P.4
-
2
-
-
33845200552
-
Stronger computational modelling of signalling pathways using both continuous and discrete-state methods
-
Computational Methods in Systems Biology - International Conference, CMSB 2006, Proceedings
-
Calder M, Duguid A, Gilmore S, Hillston J (2006) Stronger computational modelling of signalling pathways using both continuous and discrete-state methods. In: Proc 4th international conference on computational methods in systems biology (CMSB'06) (Lecture notes in computer science), vol 4210 , pp 63-77 (Pubitemid 44849979)
-
(2006)
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
, vol.4210
, Issue.LNBI
, pp. 63-77
-
-
Calder, M.1
Duguid, A.2
Gilmore, S.3
Hillston, J.4
-
5
-
-
4444382239
-
Formal molecular biology
-
Danos V, Laneve C (2004) Formal molecular biology. Theor Comput Sci 325(1):69-110
-
(2004)
Theor Comput Sci
, vol.325
, Issue.1
, pp. 69-110
-
-
Danos, V.1
Laneve, C.2
-
6
-
-
0035888407
-
Application of a stochastic name-passing calculus to representation and simulation of molecular processes
-
DOI 10.1016/S0020-0190(01)00214-9, PII S0020019001002149
-
Priami C, Regev A, Silverman W, Shapiro E (2001) Application of a stochastic name-passing calculus to representation and simulation of molecular processes. Inf Process Lett 80(1):25-31 (Pubitemid 32833107)
-
(2001)
Information Processing Letters
, vol.80
, Issue.1
, pp. 25-31
-
-
Priami, C.1
Regev, A.2
Shapiro, E.3
Silverman, W.4
-
7
-
-
65549101937
-
Bio-PEPA: A framework for the modelling and analysis of biological systems
-
Ciocchetta F, Hillston J (2009) Bio-PEPA: a Framework for the Modelling and Analysis of Biological Systems. Theor Comput Sci 410(33-34):3065-3084
-
(2009)
Theor Comput Sci
, vol.410
, Issue.33-34
, pp. 3065-3084
-
-
Ciocchetta, F.1
Hillston, J.2
-
8
-
-
57049168165
-
The continuousπ-calculus: A process algebra for biochemical modelling
-
Springer- Verlag, Berlin Heidelberg, Germany
-
Kwiatkowski M, Stark I (2008) The continuousπ-calculus: a process algebra for biochemical modelling. In: Proc 6th international conference on computational methods in systems biology (CMSB'08) (Lecture notes in computer science), no 5307. in, Springer-Verlag, Berlin Heidelberg, Germany, pp 103-122
-
(2008)
Proc 6th International Conference on Computational Methods in Systems Biology (CMSB'08) (Lecture Notes in Computer Science)
, Issue.5307
, pp. 103-122
-
-
Kwiatkowski, M.1
Stark, I.2
-
9
-
-
33645429016
-
Exact stochastic simulation of coupled chemical reactions
-
Gillespie DT (1977) Exact stochastic simulation of coupled chemical reactions. J Phys Chem 81(25):2340-2361
-
(1977)
J Phys Chem
, vol.81
, Issue.25
, pp. 2340-2361
-
-
Gillespie, D.T.1
-
10
-
-
77951520841
-
Design and development of software tools for Bio-PEPA
-
IEEE Press, Piscataway, NJ, USA
-
Duguid A, Gilmore S, Guerriero ML, Hillston J, Loewe L (2009) Design and development of software tools for Bio-PEPA. In: Proc winter simulation conference (WSC'09). IEEE Press, Piscataway, NJ, USA, pp 956-967
-
(2009)
Proc Winter Simulation Conference (WSC'09)
, pp. 956-967
-
-
Duguid, A.1
Gilmore, S.2
Guerriero, M.L.3
Hillston, J.4
Loewe, L.5
-
12
-
-
77951956151
-
Snoopy, a unifying Petri net framework to investigate biomolecular networks
-
Rohr C, Marwan W, Heiner M (2010) Snoopy, a unifying Petri net framework to investigate biomolecular networks. Bioinformatics 26(7):974-975
-
(2010)
Bioinformatics
, vol.26
, Issue.7
, pp. 974-975
-
-
Rohr, C.1
Marwan, W.2
Heiner, M.3
-
13
-
-
84873068670
-
-
Math Works MATLAB (2011) http://www.mathworks.com/.
-
Math Works MATLAB
, vol.2011
-
-
-
14
-
-
33747877324
-
BIOCHAM: An environment for modeling biological systems and formalizing experimental knowledge
-
DOI 10.1093/bioinformatics/btl172
-
Calzone L, Fages F, Soliman S (2006) BIOCHAM: an environment for modeling biological systems and formalizing experimental knowledge. Bioinformatics 22(14):1805-1807 (Pubitemid 44288351)
-
(2006)
Bioinformatics
, vol.22
, Issue.14
, pp. 1805-1807
-
-
Calzone, L.1
Fages, F.2
Soliman, S.3
-
15
-
-
0036300225
-
Modelling biological processes using workflow and Petri Net models
-
Peleg M, Yeh I, Altman R (2002) Modeling biological processes usingWorkflow and Petri Net models. Bioinformatics 18(6):825-837 (Pubitemid 34727643)
-
(2002)
Bioinformatics
, vol.18
, Issue.6
, pp. 825-837
-
-
Peleg, M.1
Yeh, I.2
Altman, R.B.3
-
16
-
-
45749112203
-
Petri nets for systems and synthetic biology
-
Springer-Verlag, Berlin Heidelberg, Germany
-
Heiner M, Gilbert D, Donaldson R (2008) Petri Nets for Systems and Synthetic Biology. In: Proc formal methods for computational systems biology (SFM'08) (Lecture notes in computer science), vol 5016. Springer-Verlag, Berlin Heidelberg, Germany, pp 215-264
-
(2008)
Proc Formal Methods for Computational Systems Biology (SFM'08) (Lecture Notes in Computer Science)
, vol.5016
, pp. 215-264
-
-
Heiner, M.1
Gilbert, D.2
Donaldson, R.3
-
18
-
-
70450186421
-
Qualitative and quantitative analysis of a Bio-PEPA model of the Gp130/JAK/STAT signalling pathway
-
Guerriero ML (2009) Qualitative and quantitative analysis of a Bio-PEPA model of the Gp130/JAK/STAT signalling pathway. Trans Comput Syst Biol XI 5750:90-115
-
(2009)
Trans Comput Syst Biol XI
, vol.5750
, pp. 90-115
-
-
Guerriero, M.L.1
-
19
-
-
26444499465
-
On statistical model checking of stochastic systems
-
Computer Aided Verification: 17th International Conference, CAV 2005. Proceedings
-
Sen K, Viswanathan M, Agha G (2005) On statistical model checking of stochastic systems. In: Proc computer aided verification (Lecture notes in computer science), vol 3576. Springer- Verlag, Berlin Heidelberg, Germany, pp 266-280 (Pubitemid 41431739)
-
(2005)
Lecture Notes in Computer Science
, vol.3576
, pp. 266-280
-
-
Sen, K.1
Viswanathan, M.2
Agha, G.3
-
20
-
-
84855207965
-
Statistical probabilistic model checking with a focus on time-bounded properties
-
DOI 10.1016/j.ic.2006.05.002, PII S0890540106000678
-
Younes HLS, Simmons RG (2006) Statistical probabilistic model checking with a focus on time-bounded properties. Inf Comput 204(9):1368-1409 (Pubitemid 44279948)
-
(2006)
Information and Computation
, vol.204
, Issue.9
, pp. 1368-1409
-
-
Younes, H.L.S.1
Simmons, R.G.2
-
21
-
-
62649170296
-
Integrated simulation and modelchecking for the analysis of biochemical systems
-
Elsevier, Oxford UK
-
Ciocchetta F, Gilmore S, Guerriero ML, Hillston J (2009) Integrated simulation and modelchecking for the analysis of biochemical systems. In: Proc 3rd international workshop on practical applications of stochastic modelling (PASM'08) (Electronic notes in theoretical computer science), vol 232. Elsevier, Oxford UK, pp 17-38
-
(2009)
Proc 3rd International Workshop on Practical Applications of Stochastic Modelling (PASM'08) (Electronic Notes in Theoretical Computer Science)
, vol.232
, pp. 17-38
-
-
Ciocchetta, F.1
Gilmore, S.2
Guerriero, M.L.3
Hillston, J.4
-
22
-
-
67349140728
-
Automated trace analysis of discrete-event system models
-
Kemper P, Tepper C (2009) Automated trace analysis of discrete-event system models. IEEE Trans Software Eng 35(2):195-208
-
(2009)
IEEE Trans Software Eng
, vol.35
, Issue.2
, pp. 195-208
-
-
Kemper, P.1
Tepper, C.2
-
23
-
-
38049146228
-
On the analysis of numerical data time series in temporal logic
-
Springer, Berlin, Heidelberg, Germany
-
Fages F, Rizk A (2007) On the analysis of numerical data time series in temporal logic. In: Proc computational methods in systems biology (CMSB'07) (Lecture notes in computer science), vol 4695. Springer, Berlin, Heidelberg, Germany, pp 48-63
-
(2007)
Proc Computational Methods in Systems Biology (CMSB'07) Lecture Notes in Computer Science
, vol.4695
, pp. 48-63
-
-
Fages, F.1
Rizk, A.2
-
24
-
-
57049106843
-
A model checking approach to the parameter estimation of biochemical pathways
-
Springer, Berlin, Heidelberg, Germany
-
Donaldson R, Gilbert D (2008) A model checking approach to the parameter estimation of biochemical pathways. In: Proc computational methods in systems biology (CMSB'08) (Lecture notes in computer science), vol 5307. Springer, Berlin, Heidelberg, Germany, pp 269-287
-
(2008)
Proc Computational Methods in Systems Biology (CMSB'08) Lecture Notes in Computer Science
, vol.5307
, pp. 269-287
-
-
Donaldson, R.1
Gilbert, D.2
-
26
-
-
79953199698
-
A semantic equivalence for Bio-PEPA based on discretisation of continuous values
-
Galpin V, Hillston J (2011) A semantic equivalence for Bio-PEPA based on discretisation of continuous values. Theor Comput Sci 412(21):2142-2161
-
(2011)
Theor Comput Sci
, vol.412
, Issue.21
, pp. 2142-2161
-
-
Galpin, V.1
Hillston, J.2
-
27
-
-
84855961000
-
Equivalences for a biological process algebra
-
DOI 10.1016/j.tcs.2011.07.006
-
Galpin V (2011) Equivalences for a biological process algebra. Theor Comput Sci412(43):6058-6082, DOI 10.1016/j.tcs.2011.07.006
-
(2011)
Theor Comput Sci412
, Issue.43
, pp. 6058-6082
-
-
Galpin, V.1
-
28
-
-
0036212767
-
Computational modeling of the dynamics of the MAP kinase cascade activated by surface and internalized EGF receptors
-
Schoeberl B, Eichler-Jonsson C, Gilles ED, Muller G (2002) Computational modeling of the dynamics of the MAP kinase cascade activated by surface and internalized EGF receptors. Nat Biotechnol 20:270-375
-
(2002)
Nat Biotechnol
, vol.20
, pp. 270-375
-
-
Schoeberl, B.1
Eichler-Jonsson, C.2
Gilles, E.D.3
Muller, G.4
-
29
-
-
0242541682
-
Shc-dependent pathway is redundant but dominant in MAPK cascade activation by EGF receptors: A modeling inference
-
DOI 10.1016/S0014-5793(03)01174-8
-
Gong Y, Zhao X (2003) Shc-dependent pathway is redundant but dominant in MAPK cascade activation by EGF receptors: a modeling inference. FEBS Lett 554:467-472 (Pubitemid 37412533)
-
(2003)
FEBS Letters
, vol.554
, Issue.3
, pp. 467-472
-
-
Gong, Y.1
Zhao, X.2
-
31
-
-
84987185054
-
The errors of TEX
-
Knuth DE (1989) The errors of TEX. Software Pract Exper 19:607-685
-
(1989)
Software Pract Exper
, vol.19
, pp. 607-685
-
-
Knuth, D.E.1
|