Genome sequence of strain HIMB30, a novel member of the marine Gammaproteobacteria

Journal of Bacteriology

Volumn 194, Issue 3, 2012, Pages 732-733

  Huggett, Megan J ^a   Rappé, Michael S ^a  

^a UNIVERSITY OF HAWAII   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

4 AMINOBENZOIC ACID; CARBON MONOXIDE; COENZYME A; PANTOTHENIC ACID; PHOSPHOGLUCONATE DEHYDROGENASE; PYRIDOXINE; RIBOFLAVIN; SEA WATER; THIOCTIC ACID;

BACTERIAL GENETICS; BACTERIAL STRAIN; BACTERIUM ISOLATION; CARBON DIOXIDE FIXATION; CITRIC ACID CYCLE; GAMMAPROTEOBACTERIA; GENE SEQUENCE; NONHUMAN; NOTE; OPEN READING FRAME; PHOTOTROPHY; PRIORITY JOURNAL;

BACTERIAL PROTEINS; BASE SEQUENCE; GAMMAPROTEOBACTERIA; GENOME, BACTERIAL; MOLECULAR SEQUENCE DATA; PHOTOSYNTHESIS; SEAWATER;

GAMMAPROTEOBACTERIA;

EID: 84855947497     PISSN: 00219193     EISSN: 10985530     Source Type: Journal    
DOI: 10.1128/JB.06506-11     Document Type: Note

References (11)

1. Acinas SG, et al. 2004. Fine-scale phylogenetic architecture of a complex bacterial community. Nature 430:551-554.
2. Choi A, Lee K, Oh H-M, Feng J, Cho J-C. 2010. Litoricola marina sp. nov. Int. J. Syst. Evol. Microbiol. 60:1303-1306.
3. Connon SA, Giovannoni SJ. 2002. High-throughput methods for culturing microorganisms in very-low-nutrient media yield diverse new marine isolates. Appl. Environ. Microbiol. 68:3878-3885.
4. Griffiths-Jones S, et al. 2005. Rfam: annotating non-coding RNAs in complete genomes. Nucleic Acids Res. 33:D121-D124.
5. Hyatt D, et al. 2010. Prodigal: prokaryotic gene recognition and translation initiation site identification. BMC Bioinformatics 11:119.
6. Kim H, Choo Y-J, Cho J-C. 2007. Litoricolaceae fam. nov., to include Litoricola lipolytica gen. nov., sp. nov., a marine bacterium belonging to the order Oceanospirillales. Int. J. Syst. Evol. Microbiol. 57:1793-1798.
7. Lagesen K, et al. 2007. RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res. 35:3100-3108.
8. Lowe TM, Eddy SR. 1997. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25:955-964.
9. Markowitz VM, Ivanova NN, Chen IMA, Chu K, Kyrpides NC. 2009. IMG ER: a system for microbial genome annotation expert review and curation. Bioinformatics 25:2271-2278.
10. Poretsky RS, Sun S, Mou X, Moran MA. 2010. Transporter genes expressed by coastal bacterioplankton in response to dissolved organic carbon. Environ. Microbiol. 12:616-627.
11. Rappé MS, Kemp PF, Giovannoni SJ. 1997. Phylogenetic diversity of marine coastal picoplankton 16S rRNA genes cloned from the continental shelf off Cape Hatteras, North Carolina. Limnol. Oceanogr. 42:811-826.