메뉴 건너뛰기




Volumn 833, Issue , 2012, Pages 389-411

Genomic approaches for determining nucleosome occupancy in yeast

Author keywords

High throughput sequencing; Illumina sequencing; Nucleosome occupancy; Tiling array

Indexed keywords

DEOXYRIBONUCLEASE I; HYDROLASE; MICROCOCCAL NUCLEASE; ZYMOLYASE;

EID: 84855905945     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-61779-477-3_23     Document Type: Article
Times cited : (5)

References (13)
  • 1
    • 22744432660 scopus 로고    scopus 로고
    • Genome-scale identification of nucleosome positions in S. Cerevisiae
    • Yuan, G.C., et al., Genome-scale identification of nucleosome positions in S. cerevisiae. Science, 2005. 309 (5734): p. 626-30.
    • (2005) Science , vol.309 , Issue.5734 , pp. 626-30
    • Yuan, G.C.1
  • 3
    • 63949083912 scopus 로고    scopus 로고
    • Amplifi cation-free Illumina sequencing-library preparation facilitates improved mapping and assembly of (G + C)-biased genomes
    • Kozarewa, I., et al., Amplifi cation-free Illumina sequencing-library preparation facilitates improved mapping and assembly of (G + C)-biased genomes. Nat Methods, 2009. 6 (4): p. 291-5.
    • (2009) Nat Methods , vol.6 , Issue.4 , pp. 291-295
    • Kozarewa, I.1
  • 4
    • 57749121616 scopus 로고    scopus 로고
    • A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters
    • Badis, G., et al., A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters. Mol Cell, 2008. 32 (6): p. 878-87.
    • (2008) Mol Cell , vol.32 , Issue.6 , pp. 878-887
    • Badis, G.1
  • 5
    • 84990251443 scopus 로고    scopus 로고
    • A temporal threshold for formaldehyde crosslinking and fixation
    • Schmiedeberg, L., et al., A temporal threshold for formaldehyde crosslinking and fixation. PLoS One, 2009. 4 (2): p. e4636.
    • (2009) PLoS One , vol.4 , Issue.2
    • Schmiedeberg, L.1
  • 6
    • 46849099222 scopus 로고    scopus 로고
    • Utility of formaldehyde cross-linking and mass spectrometry in the study of protein-protein interactions
    • DOI 10.1002/jms.1415
    • Sutherland, B.W., J. Toews, and J. Kast, Utility of formaldehyde cross-linking and mass spectrometry in the study of protein-protein interactions. J Mass Spectrom, 2008. 43 (6): p. 699-715. (Pubitemid 351954805)
    • (2008) Journal of Mass Spectrometry , vol.43 , Issue.6 , pp. 699-715
    • Sutherland, B.W.1    Toews, J.2    Kast, J.3
  • 7
    • 74949110964 scopus 로고    scopus 로고
    • High-resolution nucleosome mapping reveals transcription-dependent promoter packaging
    • Weiner, A., et al., High-resolution nucleosome mapping reveals transcription-dependent promoter packaging. Genome Res, 2010. 20 (1): p. 90-100.
    • (2010) Genome Res , vol.20 , Issue.1 , pp. 90-100
    • Weiner, A.1
  • 8
    • 77955388311 scopus 로고    scopus 로고
    • A preoccupied position on nucleosomes
    • Pugh, B.F., A preoccupied position on nucleosomes. Nat Struct Mol Biol, 2010. 17 (8): p. 923.
    • (2010) Nat Struct Mol Biol , vol.17 , Issue.8 , pp. 923
    • Pugh, B.F.1
  • 9
    • 78149237772 scopus 로고    scopus 로고
    • Nucleosome depletion at yeast terminators is not intrinsic and can occur by a transcriptional mechanism linked to 3 ′-end formation
    • Fan, X., et al., Nucleosome depletion at yeast terminators is not intrinsic and can occur by a transcriptional mechanism linked to 3 ′-end formation. Proc Natl Acad Sci USA, 2010. 107 (42): p. 17945-50.
    • (2010) Proc Natl Acad Sci USA , vol.107 , Issue.42 , pp. 17945-17950
    • Fan, X.1
  • 10
    • 77951241293 scopus 로고    scopus 로고
    • Chemical approaches for studying histone modifications
    • Chatterjee, C. and T.W. Muir, Chemical approaches for studying histone modifications. J Biol Chem, 2010. 285 (15): p. 11045-50.
    • (2010) J Biol Chem , vol.285 , Issue.15 , pp. 11045-11050
    • Chatterjee, C.1    Muir, T.W.2
  • 11
    • 2142703738 scopus 로고    scopus 로고
    • Modeling formalin fixation and antigen retrieval with bovine pancreatic RNase A II. Interrelationship of cross-linking, immunoreactivity, and heat treatment
    • DOI 10.1038/labinvest.3700041
    • Rait, V.K., et al., Modeling formalin fixation and antigen retrieval with bovine pancreatic RNase A II. Interrelationship of cross-linking, immunoreactivity, and heat treatment. Lab Invest, 2004. 84 (3): p. 300-6. (Pubitemid 41656485)
    • (2004) Laboratory Investigation , vol.84 , Issue.3 , pp. 300-306
    • Rait, V.K.1    Xu, L.2    O'Leary, T.J.3    Mason, J.T.4
  • 12
    • 77956034122 scopus 로고    scopus 로고
    • Genome-wide mapping of nucleosomes in yeast
    • Rando, O.J., Genome-wide mapping of nucleosomes in yeast. Methods Enzymol, 2010. 470 : p. 105-18.
    • (2010) Methods Enzymol , vol.470 , pp. 105-118
    • Rando, O.J.1
  • 13
    • 33645785104 scopus 로고    scopus 로고
    • A high-resolution map of transcription in the yeast genome
    • David, L., et al., A high-resolution map of transcription in the yeast genome. Proc Natl Acad Sci USA, 2006. 103 (14): p. 5320-5.
    • (2006) Proc Natl Acad Sci USA , vol.103 , Issue.14 , pp. 5320-5325
    • David, L.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.