Karyotyping methods for fungi

Methods in Molecular Biology

Volumn 835, Issue , 2012, Pages 591-602

  Mehrabi, Rahim ^a   Taga, Masatoki ^c   Aghaee, Mostafa ^a   De Wit, Pierre J G M ^b   Kema, Gert H J ^b  

^a SEED AND PLANT IMPROVEMENT INSTITUTE   (Iran)

^b WAGENINGEN UNIVERSITY   (Netherlands)

^c OKAYAMA UNIVERSITY   (Japan)

Author keywords

Chromosome polymorphisms; Electrophoretic karyotyping; Germ tube burst method; Pulsed field gel electrophoresis

Indexed keywords

ARTICLE; CHROMOSOME; FUNGUS; GENETIC POLYMORPHISM; GENETICS; KARYOTYPING; METHODOLOGY; PULSED FIELD GEL ELECTROPHORESIS;

CHROMOSOMES, FUNGAL; ELECTROPHORESIS, GEL, PULSED-FIELD; FUNGI; KARYOTYPING; POLYMORPHISM, GENETIC;

FUNGI;

EID: 84855895463     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-61779-501-5_37     Document Type: Article

References (13)

1. Schwartz, D. C., Saffran, W., Welsh, J., Haas, R., Goldenberg, M., and Cantor, C. R. (1983) New techniques for purifying large DNAs and studying their properties and packaging, Cold Spring Harb Symp Quant Biol 47 Pt 1, 189-195. (Pubitemid 13071360)
2. Shirane, N., Masuko, M., and Hayashi, Y. (1989) Light microscopic observation of nuclei and mitotic chromosomes of Botrytis species, Phytopathology 79, 728-730.
3. Taga, M., and Murata, M. (1994) Visualization of mitotic chromosomes in fi lamentous fungi by fl uorescence staining and fl uorescence insitu hybridization, Chromosoma 103, 408-413. (Pubitemid 24334444)
4. Akamatsu, H., Taga, M., Kodama, M., Johnson, R., Otani, H., and Kohmoto, K. (1999) Molecular karyotypes for Alternaria plant pathogens known to produce host-specifi c toxins, Current Genetics 35, 647-656. (Pubitemid 29366582)
5. Mehrabi, R., Taga, M., and Kema, G. H. J. (2007) Electrophoretic and cytological karyotyping of the foliar wheat pathogen Mycosphaerella graminicola reveals many chromosomes with a large size range, Mycologia 99, 868-876. (Pubitemid 351198226)
6. Tsuchiya, D., and Taga, M. (2001) Cytological karyotyping of three Cochliobolus spp. by the germ tube burst method, Phytopathology 91, 354-360. (Pubitemid 32247796)
7. Taga, M., Murata, M., and Saito, H. (1998) Comparison of different karyotyping methods in fi lamentous ascomycetes - a case study of Nectria haematococca, Mycological Research 102, 1355-1364. (Pubitemid 28548044)
8. Gale, L. R., Bryant, J. D., Calvo, S., Giese, H., Katan, T., O'Donnell, K., Suga, H., Taga, M., Usgaard, T. R., Ward, T. J., and Kistler, H. C. (2005) Chromosome complement of the fungal plant pathogen Fusarium graminearum based on genetic and physical mapping and cytological observations, Genetics 171, 985-1001. (Pubitemid 43234837)
9. Eusebio-Cope, A., Suzuki, N., Sadeghi- Garmaroodi, H., and Taga, M. (2009) Cytological and electrophoretic karyotyping of the chestnut blight fungus Cryphonectria parasitica, Fungal Genetics and Biology 46, 342-351.
10. Ma, L. J., van der Does, H. C., Borkovich, K. A., Coleman, J. J., Daboussi, M. J., Di Pietro, A., Dufresne, M., Freitag, M., Grabherr, M., Henrissat, B., Houterman, P. M., Kang, S., Shim, W. B., Woloshuk, C., Xie, X. H., Xu, J. R., Antoniw, J., Baker, S. E., Bluhm, B. H., Breakspear, A., Brown, D. W., Butchko, R. A. E., Chapman, S., Coulson, R., Coutinho, P. M., Danchin, E. G. J., Diener, A., Gale, L. R., Gardiner, D. M., Goff, S., Hammond-Kosack, K. E., Hilburn, K., Hua-Van, A., Jonkers, W., Kazan, K., Kodira, C. D., Koehrsen, M., Kumar, L., Lee, Y. H., Li, L. D., Manners, J. M., Miranda-Saavedra, D., Mukherjee, M., Park, G., Park, J., Park, S. Y., Proctor, R. H., Regev, A., Ruiz-Roldan, M. C., Sain, D., Sakthikumar, S., Sykes, S., Schwartz, D. C., Turgeon, B. G., Wapinski, I., Yoder, O., Young, S., Zeng, Q. D., Zhou, S. G., Galagan, J., Cuomo, C. A., Kistler, H. C., and Rep, M. (2010) Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium, Nature 464, 367-373.
11. Suga, H., Ikeda, S., Taga, M., Kageyama, K., and Hyakumachi, M. (2002) Electrophoretic karyotyping and gene mapping of seven formae speciales in Fusarium solani, Current Genetics 41, 254-260. (Pubitemid 36075976)
12. Zhong, S. B., and Steffenson, B. J. (2007) Molecular karyotyping and chromosome length polymorphism in Cochliobolus sativus, Mycological Research 111, 78-86. (Pubitemid 46241860)
13. Taga, M., Murata, M., and VanEtten, H. D. (1999) Visualization of a conditionally dispensable chromosome in the fi lamentous ascomycete Nectria haematococca by fl uorescence in situ hybridization, Fungal Genetics and Biology 26, 169-177. (Pubitemid 29412589)