Proteomic analysis of papaya fruit ripening using 2DE-DIGE

Journal of Proteomics

Volumn 75, Issue 4, 2012, Pages 1428-1439

  Nogueira, Silvia Beserra ^a   Labate, Carlos Alberto ^a   Gozzo, Fabio Cesar ^b   Pilau, Eduardo Jorge ^b   Lajolo, Franco Maria ^a   Oliveira do Nascimento, João Roberto ^a  

^a UNIVERSITY OF SÃO PAULO   (Brazil)

^b UNIVERSITY OF CAMPINAS   (Brazil)

Author keywords

2DE DIGE; Fibrillin; GcpE; MEP pathway; Papaya proteome; Papaya ripening

Indexed keywords

ALDEHYDE DEHYDROGENASE; ALPHA GALACTOSIDASE; BETA FRUCTOFURANOSIDASE; CHAPERONIN; FIBRILLIN; GLUTATHIONE TRANSFERASE; HEAT SHOCK PROTEIN 70; METHIONINE SYNTHASE; PROTEOME; PROTON TRANSPORTING ADENOSINE TRIPHOSPHATE SYNTHASE; PYRUVATE DEHYDROGENASE;

ARTICLE; CARBOHYDRATE METABOLISM; CELL WALL; CLIMATE; COMPARATIVE STUDY; CONTROLLED STUDY; DENATURING GRADIENT GEL ELECTROPHORESIS; ENERGY METABOLISM; FRUIT RIPENING; MASS SPECTROMETRY; NONHUMAN; NUCLEOTIDE SEQUENCE; PAPAYA; PRIORITY JOURNAL; PROTEIN SYNTHESIS; PROTEOMICS; RESPIRATORY BURST; STRESS;

CARBOCYANINES; CARICA; CELL WALL; CHROMATOGRAPHY, LIQUID; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; ETHYLENES; FRUIT; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, PLANT; IMAGE PROCESSING, COMPUTER-ASSISTED; MASS SPECTROMETRY; PLASTIDS; PROTEOMICS; TIME FACTORS;

CARICA PAPAYA;

EID: 84855887352     PISSN: 18743919     EISSN: 18767737     Source Type: Journal    
DOI: 10.1016/j.jprot.2011.11.015     Document Type: Article

References (40)

1. Fabi J.P., Cordenunsi B.R., de Mattos Barreto G.P., Mercadante A.Z., Lajolo F.M., Oliveira do Nascimento J.R. Papaya fruit ripening: response to ethylene and 1-methylcyclopropene (1-MCP). J Agric Food Chem 2007, 55:6118-6123.
2. Rossetto M.R.M., Nascimento J.R.O., Purgatto E., Fabi J.P., Lajolo F.M., Cordenunsi B.R. Benzylglucosinolate, benzylisothiocyanate, and myrosinase activity in papaya fruit during development and ripening. J Agric Food Chem 2008, 56:9592-9599.
3. Alvarez A.M., Nishijima W.T. Postharvest diseases of papaya. Plant Dis 1987, 71:681-686.
4. Abeles F.B., Morgan P.W., Saltveit M.E. Ethylene in Plant Biology 1992, Academic Press Inc., San Diego.
5. Barry C.S., Giovannoni J.J. Ethylene and fruit ripening. J Plant Growth Regul 2007, 26:143-159.
6. Tucker G. Introduction. Biochemistry of Fruit Ripening 1993, 1-43. Chapman & Hall, London. G. Seymour, J. Taylor, G. Tucker (Eds.).
7. Giovannoni J.J. Genetic regulation of fruit development and ripening. Plant Cell 2004, 16:S170-S180. [Suppl.].
8. Kok E.J., Lehesranta S.J., van Dijk J.P., Helsdingen J.R., Dijksma W.T.P., Van Hoef A.M.A., et al. Changes in gene and protein expression during tomato ripening - consequences for the safety assessment of new crop plant varieties. Food Sci Technol Int 2008, 14:503-518.
9. Mann M., Jensen O.N. Proteomic analysis of post-translational modifications. Nat Biotechnol 2003, 21:255-261.
10. Palma J.M., Corpas F.J., del Río Luís A. Proteomics as an approach to the understanding of the molecular physiology of fruit development and ripening. J Proteomics 2011, 74:1230-1243.
11. Faurobert M., Mihr C., Bertin N., Pawlowski T., Negroni L., Sommerer N., et al. Major proteome variations associated with cherry tomato pericarp development and ripening. Plant Physiol 2007, 143:1327-1346.
12. Rocco M., D'Ambrosio C., Arena S., Faurobert M., Scaloni A., Marra M. Proteomic analysis of tomato fruits from two ecotypes during ripening. Proteomics 2006, 6:3781-3791.
13. Lee D.G., Ahsan N., Lee S.H., Lee J.J., Bahk J.D., Kang K.Y., et al. Chilling stress-induced proteomic changes in rice roots. J Plant Physiol 2009, 166:1-11.
14. Yun Z., Li W.Y., Pan Z.Y., Xu J., et al. Comparative proteomics analysis of differentially accumulated proteins in juice sacs of ponkan (Citrus reticulata) fruit during postharvest cold storage. Postharvest Biol Tec. 2010, 56:189-201.
15. Pedreschi R., Hertog M., Robben J., Lilley K.S., et al. Gel-based proteomics approach to the study of metabolic changes in pear tissue during storage. J Agric Food Chem 2009, 57:6997-7004.
16. Fabi J.P., Mendes L.R.B.C., Lajolo F.M., do Nascimento J.R.O. Transcript profiling of papaya fruit reveals differentially expressed genes associated with fruit ripening. Plant Sci 2010, 179:225-233.
17. Paull R.E., Irikura B., Wu P., Turano H., Chen N.J., Blas A., et al. Fruit development, ripening and quality related genes in the papaya genome. Trop Plant Biol 2008, 1:246-277.
18. Carpentier S.C., Witters E., Laukens K., Deckers P., Swennen R., Panis B. Preparation of protein extracts from recalcitrant plant tissues: an evaluation of different methods for two-dimensional gel electrophoresis analysis. Proteomics 2005, 5:2497-2507.
19. Neuhoff V., Stamm R., Pardowitz I., Arold N., Ehrhardt W., Taube D. Essential problems in quantification of proteins following colloidal staining with coomassie brilliant blue dyes in polyacrylamide gels, and their solution. Electrophoresis 1990, 11:101-117.
20. Zhou L.L., Chen C.C., Ming R., Crhristopher D.A., Paull R.E. Apoplastic invertase and its enhanced expression and post-translation control during fruit maturation and ripening. J Am Soc Hortic Sci 2003, 128:628-635.
21. Fotopoulos V. Plant invertases: structure, function and regulation of a diverse enzyme family. J Biol Res 2005, 4:127-137.
22. Davies C., Robinson S.P. Sugar accumulation in grape berries (cloning of two putative vacuolar invertase cDNAs and their expression in grapevine tissues). Plant Physiol 1996, 111:275-283.
23. Soh C.P., Ali Z.M., Lazan H. Characterisation of an alpha-galactosidase with potential relevance to ripening related texture changes. Phytochemistry 2006, 67:242-254.
24. Shiga T.M., Fabi J.P., Nascimento J.R., Petkowicz C.L., Vriesmann L.C., Lajolo F.M., et al. Changes in cell wall composition associated to the softening of ripening papaya: evidence of extensive solubilization of large molecular mass galactouronides. J Agric Food Chem 2009, 57:7064-7071.
25. Paull R.E., Gross K., Qiu Y.X. Changes in papaya cell walls during fruit ripening. Postharvest Biol Tec. 1999, 16:79-89.
26. Lazan H., Ng S.Y., Goh L.Y., Ali Z.M. Papaya beta-galactosidase/galactanase isoforms in differential cell wall hydrolysis and fruit softening during ripening. Plant Physiol Biochem 2004, 42:847-853.
27. Katz Y.S., Galili G., Amir R. Regulatory role of cystathionine-gamma-synthase and de novo synthesis of methionine in ethylene production during tomato fruit ripening. Plant Mol Biol 2006, 61:255-268.
28. Devitt L.C., Sawbridge T., Holton T.A., Mitchelson K., Dietzgen R.G. Discovery of genes associated with fruit ripening in Carica papaya using expressed sequence tags. Plant Sci 2006, 170:356-363.
29. Sweetman C., Deluc L.G., Cramer G.R., Ford C.M., Soole K.L. Regulation of malate metabolism in grape berry and other developing fruits. Phytochemistry 2009, 70:1329-1344.
30. Holtzapffel R.C., Finnegan P.M., Millar A.H., Badger M.R., Day D.A. Mitochondrial protein expression in tomato fruit during on-vine ripening and cold storage. Funct Plant Biol 2002, 29:827-834.
31. Zhang J., Ma H., Feng J., Zeng L., Wang Z., Chen S. Grape berry plasma membrane proteome analysis and its differential expression during ripening. J Exp Bot 2008, 59:2979-2990.
32. Rodriguez-Concepcion M. Supply of precursors for carotenoid biosynthesis in plants. Arch Biochem Biophys 2010, 504:118-122.
33. Rodriguez-Concepcion M., Querol J., Lois L.M., Imperial S., Boronat A. Bioinformatic and molecular analysis of hydroxymethylbutenyl diphosphate synthase (GCPE) gene expression during carotenoid accumulation in ripening tomato fruit. Planta 2003, 217:476-482.
34. Egea I., Barsan C., Bian W., Purgatto E., Latche A., Chervin C., et al. Chromoplast differentiation: current status and perspectives. Plant Cell Physiol 2010, 51:1601-1611.
35. Deruère J., Romer S., d'Harlingue A., Backhaus R.A., Kuntz M., Camara B. Fibril assembly and carotenoid overaccumula- tion in chromoplasts: a model for supramolecular lipoprotein structures. Plant Cell 1994, 6:119-133.
36. Vishnevetsky J., White T.L., Palmateer A.J., Flaishman M., Cohen Y., Elad Y., et al. Improved tolerance toward fungal diseases in transgenic Cavendish banana (Musa spp. AAA group) cv. Grand Nain. Transgenic Res 2011, 20:61-72.
37. Rogiers S.Y., Kumar G.N.M., Knowles N.R. Maturation and Ripening of Fruit of Amelanchier alnifolia Nutt. are Accompanied by Increasing Oxidative Stress. Ann Bot 1998, 81:203-211.
38. Di Carli M., Zamboni A., Pe M.E., Pezzotti M., Lilley K.S., Benvenuto E., et al. Two-dimensional differential in gel electrophoresis (2D-DIGE) analysis of grape berry proteome during postharvest withering. J Proteome Res 2011, 10:429-446.
39. Wang W., Vinocur B., Shoseyov O., Altman A. Role of plant heat-shock proteins and molecular chaperones in the abiotic stress response. Trends Plant Sci 2004, 9:244-252.
40. Fabi J.P., Cordenunsi B.R., Seymour G.B., Lajolo F.M., do Nascimento J.R.O. Molecular cloning and characterization of a ripening-induced polygalacturonase related to papaya fruit softening. Plant Physiol Biochem 2009, 47:1075-1081.