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Volumn 78, Issue 2, 2012, Pages 503-510

Genetic markers for rapid PCR-based identification of gull, Canada goose, duck, and chicken fecal contamination in water

Author keywords

[No Author keywords available]

Indexed keywords

CAMPYLOBACTERS; ENTEROBACTERIACEAE; FECAL CONTAMINATION; GENETIC MARKERS; GEOGRAPHIC DISTRIBUTION; HELICOBACTER; HUMAN HEALTH RISKS; HUMAN PATHOGENS; MOST PROBABLE NUMBER; NEW ZEALAND; PCR ASSAY; QUANTITATIVE PCR; RAPID IDENTIFICATION; RNA GENES; RRNA GENES; SUBTRACTIVE HYBRIDIZATION; SYBR GREEN;

EID: 84855736101     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.05734-11     Document Type: Article
Times cited : (132)

References (36)
  • 1
    • 34447133054 scopus 로고    scopus 로고
    • Relationship between the contamination of gulls (Larus dominicanus) and oysters (Crassostrea gigas) with Salmonella serovar Typhimurium by PCRRFLP
    • Albarnaz JD, Toso J, Correa AA, Simoes CM, Barardi CR. 2007. Relationship between the contamination of gulls (Larus dominicanus) and oysters (Crassostrea gigas) with Salmonella serovar Typhimurium by PCRRFLP. Int. J. Environ. Health Res. 17:133-140.
    • (2007) Int. J. Environ. Health Res. , vol.17 , pp. 133-140
    • Albarnaz, J.D.1    Toso, J.2    Correa, A.A.3    Simoes, C.M.4    Barardi, C.R.5
  • 2
    • 0032731967 scopus 로고    scopus 로고
    • Seasonal enumeration of fecal coliform bacteria from the feces of ring-billed gulls (Larus delawarensis) and Canada geese (Branta canadensis)
    • Alderisio KA, DeLuca N. 1999. Seasonal enumeration of fecal coliform bacteria from the feces of ring-billed gulls (Larus delawarensis) and Canada geese (Branta canadensis). Appl. Environ. Microbiol. 65:5628-5630.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 5628-5630
    • Alderisio, K.A.1    DeLuca, N.2
  • 4
    • 84878675097 scopus 로고    scopus 로고
    • Reference deleted
    • Reference deleted
  • 6
    • 0034126848 scopus 로고    scopus 로고
    • Identification of nonpoint sources of fecal pollution in coastal waters by using host-specific 16S ribosomal DNA genetic markers from fecal anaerobes
    • Bernhard AE, Field KG. 2000. Identification of nonpoint sources of fecal pollution in coastal waters by using host-specific 16S ribosomal DNA genetic markers from fecal anaerobes. Appl. Environ. Microbiol. 66: 1587-1594.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 1587-1594
    • Bernhard, A.E.1    Field, K.G.2
  • 7
    • 0033774937 scopus 로고    scopus 로고
    • A PCR assay to discriminate human and ruminant feces on the basis of host differences in Bacteroides-Prevotella genes encoding 16S rRNA
    • Bernhard AE, Field KG. 2000. A PCR assay to discriminate human and ruminant feces on the basis of host differences in Bacteroides-Prevotella genes encoding 16S rRNA. Appl. Environ. Microbiol. 66:4571-4574.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 4571-4574
    • Bernhard, A.E.1    Field, K.G.2
  • 9
    • 33846072878 scopus 로고    scopus 로고
    • The Ribosomal Database Project (RDP-II): introducing myRDP space and quality controlled public data
    • Cole JR, et al. 2007. The Ribosomal Database Project (RDP-II): introducing myRDP space and quality controlled public data. Nucleic Acids Res. 35:D169-D172.
    • (2007) Nucleic Acids Res , vol.35
    • Cole, J.R.1
  • 10
    • 77956210654 scopus 로고    scopus 로고
    • Can preening contribute to influenza A virus infection in wild waterbirds?
    • Delogu M, et al. 2010. Can preening contribute to influenza A virus infection in wild waterbirds? PLoS One 5:e11315.
    • (2010) PLoS One , vol.5
    • Delogu, M.1
  • 11
    • 20144387820 scopus 로고    scopus 로고
    • The occurrence of Campylobacter subtypes in environmental reservoirs and potential transmission routes
    • Devane ML, et al. 2005. The occurrence of Campylobacter subtypes in environmental reservoirs and potential transmission routes. J. Appl. Microbiol. 98:980-990.
    • (2005) J. Appl. Microbiol. , vol.98 , pp. 980-990
    • Devane, M.L.1
  • 12
    • 34547427951 scopus 로고    scopus 로고
    • A PCR marker for detection in surface waters of faecal pollution derived from ducks
    • Devane ML, Robson B, Nourozi F, Scholes P, Gilpin BJ. 2007. A PCR marker for detection in surface waters of faecal pollution derived from ducks. Water Res. 41:3553-3560.
    • (2007) Water Res , vol.41 , pp. 3553-3560
    • Devane, M.L.1    Robson, B.2    Nourozi, F.3    Scholes, P.4    Gilpin, B.J.5
  • 13
    • 20444422471 scopus 로고    scopus 로고
    • Host distributions of uncultivated fecal Bacteroidales bacteria reveal genetic markers for fecal source identification
    • Dick LK, et al. 2005. Host distributions of uncultivated fecal Bacteroidales bacteria reveal genetic markers for fecal source identification. Appl. Environ. Microbiol. 71:3184-3191.
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 3184-3191
    • Dick, L.K.1
  • 14
    • 4644301880 scopus 로고    scopus 로고
    • Rapid estimation of numbers of fecal Bacteroidetes by use of a quantitative PCR assay for 16S rRNA genes
    • Dick LK, Field KG. 2004. Rapid estimation of numbers of fecal Bacteroidetes by use of a quantitative PCR assay for 16S rRNA genes. Appl. Environ. Microbiol. 70:5695-5697.
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 5695-5697
    • Dick, L.K.1    Field, K.G.2
  • 15
    • 20444369467 scopus 로고    scopus 로고
    • Microplate subtractive hybridization to enrich for Bacteroidales genetic markers for fecal source identification
    • Dick LK, Simonich MT, Field KG. 2005. Microplate subtractive hybridization to enrich for Bacteroidales genetic markers for fecal source identification. Appl. Environ. Microbiol. 71:3179-3183.
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 3179-3183
    • Dick, L.K.1    Simonich, M.T.2    Field, K.G.3
  • 16
    • 34547401084 scopus 로고    scopus 로고
    • Multiple lines of evidence to identify the sources of fecal pollution at a freshwater beach in Hamilton Harbour, Lake Ontario
    • Edge TA, Hill S. 2007. Multiple lines of evidence to identify the sources of fecal pollution at a freshwater beach in Hamilton Harbour, Lake Ontario. Water Res. 41:3585-3594.
    • (2007) Water Res , vol.41 , pp. 3585-3594
    • Edge, T.A.1    Hill, S.2
  • 17
    • 48449093098 scopus 로고    scopus 로고
    • Sampling for low-pathogenic avian influenza A virus in wild Mallard ducks: oropharyngeal versus cloacal swabbing
    • Ellström P, et al. 2008. Sampling for low-pathogenic avian influenza A virus in wild Mallard ducks: oropharyngeal versus cloacal swabbing. Vaccine 26:4414-4416.
    • (2008) Vaccine , vol.26 , pp. 4414-4416
    • Ellström, P.1
  • 18
    • 11244333441 scopus 로고    scopus 로고
    • Survey of parasites and bacterial pathogens from free-living waterfowl in zoological settings
    • Fallacara DM, Monahan CM, Morishita TY, Bremer CA, Wack RF. 2004. Survey of parasites and bacterial pathogens from free-living waterfowl in zoological settings. Avian Dis. 48:759-767.
    • (2004) Avian Dis , vol.48 , pp. 759-767
    • Fallacara, D.M.1    Monahan, C.M.2    Morishita, T.Y.3    Bremer, C.A.4    Wack, R.F.5
  • 19
    • 0035071509 scopus 로고    scopus 로고
    • Fecal shedding and antimicrobial susceptibility of selected bacterial pathogens and a survey of intestinal parasites in free-living waterfowl
    • Fallacara DM, Monahan CM, Morishita TY, Wack RF. 2001. Fecal shedding and antimicrobial susceptibility of selected bacterial pathogens and a survey of intestinal parasites in free-living waterfowl. Avian Dis. 45:128-135.
    • (2001) Avian Dis , vol.45 , pp. 128-135
    • Fallacara, D.M.1    Monahan, C.M.2    Morishita, T.Y.3    Wack, R.F.4
  • 20
    • 35448935976 scopus 로고    scopus 로고
    • Cryptosporidium genotypes in wildlife from a New York watershed
    • Feng Y, et al. 2007. Cryptosporidium genotypes in wildlife from a New York watershed. Appl. Environ. Microbiol. 73:6475-6483.
    • (2007) Appl. Environ. Microbiol. , vol.73 , pp. 6475-6483
    • Feng, Y.1
  • 21
    • 77954756371 scopus 로고    scopus 로고
    • Quantitative real-time PCR assays for sensitive detection of Canada goose-specific fecal pollution in water sources
    • Fremaux B, Boa T, Yost CK. 2010. Quantitative real-time PCR assays for sensitive detection of Canada goose-specific fecal pollution in water sources. Appl. Environ. Microbiol. 76:4886-4889.
    • (2010) Appl. Environ. Microbiol. , vol.76 , pp. 4886-4889
    • Fremaux, B.1    Boa, T.2    Yost, C.K.3
  • 22
    • 77956160654 scopus 로고    scopus 로고
    • Coastal loading and transport of Escherichia coli at an embayed beach in Lake Michigan
    • Ge Z, Nevers MB, Schwab DJ, Whitman RL. 2010. Coastal loading and transport of Escherichia coli at an embayed beach in Lake Michigan. Environ. Sci. Technol. 44:6731-6737.
    • (2010) Environ. Sci. Technol. , vol.44 , pp. 6731-6737
    • Ge, Z.1    Nevers, M.B.2    Schwab, D.J.3    Whitman, R.L.4
  • 23
    • 21244437959 scopus 로고    scopus 로고
    • Use of composite data sets for source-tracking enterococci in the water column and shoreline interstitial waters on Pensacola Beach
    • Genthner FJ, James JB, Yates DF, Friedman SD. 2005. Use of composite data sets for source-tracking enterococci in the water column and shoreline interstitial waters on Pensacola Beach, Florida. Mar. Pollut. Bull. 50: 724-732.
    • (2005) Florida. Mar. Pollut. Bull. , vol.50 , pp. 724-732
    • Genthner, F.J.1    James, J.B.2    Yates, D.F.3    Friedman, S.D.4
  • 24
    • 0018118856 scopus 로고
    • Gull droppings and their effects on water quality
    • Gould DJ, Fletcher MR. 1978. Gull droppings and their effects on water quality. Water Res. 12:655-672.
    • (1978) Water Res , vol.12 , pp. 655-672
    • Gould, D.J.1    Fletcher, M.R.2
  • 25
    • 82555172353 scopus 로고    scopus 로고
    • Differential decay of human fecal Bacteroides in marine and fresh water
    • 1 September, [Epub ahead of print.]
    • Green HG, Shanks OC, Sivaganesan M, Haugland R, Field KG. 1 September 2011. Differential decay of human fecal Bacteroides in marine and fresh water. Environ. Microbiol. [Epub ahead of print.]
    • (2011) Environ. Microbiol
    • Green, H.G.1    Shanks, O.C.2    Sivaganesan, M.3    Haugland, R.4    Field, K.G.5
  • 26
    • 33745131779 scopus 로고    scopus 로고
    • Development of goose- and duck-specific DNA markers to determine sources of Escherichia coli in waterways
    • Hamilton MJ, Yan T, Sadowsky MJ. 2006. Development of goose- and duck-specific DNA markers to determine sources of Escherichia coli in waterways. Appl. Environ. Microbiol. 72:4012-4019.
    • (2006) Appl. Environ. Microbiol. , vol.72 , pp. 4012-4019
    • Hamilton, M.J.1    Yan, T.2    Sadowsky, M.J.3
  • 27
    • 0036289329 scopus 로고    scopus 로고
    • Prevalence of Salmonella typhimurium infection in Norwegian hedgehog populations associated with two human disease outbreaks
    • Handeland K, et al. 2002. Prevalence of Salmonella typhimurium infection in Norwegian hedgehog populations associated with two human disease outbreaks. Epidemiol. Infect. 128:523-527.
    • (2002) Epidemiol. Infect. , vol.128 , pp. 523-527
    • Handeland, K.1
  • 28
    • 33847348149 scopus 로고    scopus 로고
    • Bird migration routes and risk for pathogen dispersion into western Mediterranean wetlands
    • Jourdain E, Gauthier-Clerc M, Bicout D, Sabatier P. 2007. Bird migration routes and risk for pathogen dispersion into western Mediterranean wetlands. Emerg. Infect. Dis. 13:365-372.
    • (2007) Emerg. Infect. Dis. , vol.13 , pp. 365-372
    • Jourdain, E.1    Gauthier-Clerc, M.2    Bicout, D.3    Sabatier, P.4
  • 29
    • 34547597968 scopus 로고    scopus 로고
    • 16S rRNA-based assays for quantitative detection of universal, human-, cow-, and dog-specific fecal Bacteroidales: a Bayesian approach
    • Kildare BJ, et al. 2007. 16S rRNA-based assays for quantitative detection of universal, human-, cow-, and dog-specific fecal Bacteroidales: a Bayesian approach. Water Res. 41:3701-3715.
    • (2007) Water Res , vol.41 , pp. 3701-3715
    • Kildare, B.J.1
  • 30
    • 33845889525 scopus 로고    scopus 로고
    • Predicting the global spread of H5N1 avian influenza
    • Kilpatrick A, et al. 2006. Predicting the global spread of H5N1 avian influenza. Proc. Natl. Acad. Sci. U. S. A. 103:19368-19373.
    • (2006) Proc. Natl. Acad. Sci. U. S. A. , vol.103 , pp. 19368-19373
    • Kilpatrick, A.1
  • 31
    • 0001857117 scopus 로고
    • 16S/23S rRNA sequencing
    • Stackebrandt E, GoodfellowM(ed), John Wiley & Sons, New York, NY
    • Lane DJ. 1991. 16S/23S rRNA sequencing, p 115-148. In Stackebrandt E, GoodfellowM(ed), Nucleic acid techniques in bacterial systematics. John Wiley & Sons, New York, NY.
    • (1991) Nucleic acid techniques in bacterial systematics , pp. 115-148
    • Lane, D.J.1
  • 32
    • 33244482451 scopus 로고    scopus 로고
    • Catellicoccus marimammalium gen. nov., sp. nov., a novel Gram-positive, catalase-negative, coccus-shaped bacterium from porpoise and grey seal
    • Lawson PA, Collins MD, Falsen E, Foster G. 2006. Catellicoccus marimammalium gen. nov., sp. nov., a novel Gram-positive, catalase-negative, coccus-shaped bacterium from porpoise and grey seal. Int. J. Syst. Evol. Microbiol. 56:429-432.
    • (2006) Int. J. Syst. Evol. Microbiol. , vol.56 , pp. 429-432
    • Lawson, P.A.1    Collins, M.D.2    Falsen, E.3    Foster, G.4
  • 33
    • 33745153077 scopus 로고    scopus 로고
    • Development of Bacteroides 16S rRNA gene TaqMan-based real-time PCR assays for estimation of total, human, and bovine fecal pollution in water
    • Layton A, et al. 2006. Development of Bacteroides 16S rRNA gene TaqMan-based real-time PCR assays for estimation of total, human, and bovine fecal pollution in water. Appl. Environ. Microbiol. 72:4214-4224.
    • (2006) Appl. Environ. Microbiol. , vol.72 , pp. 4214-4224
    • Layton, A.1
  • 34
    • 0027468444 scopus 로고
    • Impact of the ring-billed gull (Larus delawarensis) on the microbiological quality of recreational water
    • Lévesque B, et al. 1993. Impact of the ring-billed gull (Larus delawarensis) on the microbiological quality of recreational water. Appl. Environ. Microbiol. 59:1228-1230.
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 1228-1230
    • Lévesque, B.1
  • 35
    • 78650334301 scopus 로고    scopus 로고
    • Antibiotic-resistant Escherichia coli bacteria, including strains with genes encoding the extended-spectrum beta-lactamase and QnrS, in waterbirds on the Baltic Sea coast of Poland
    • Literak I, et al. 2010. Antibiotic-resistant Escherichia coli bacteria, including strains with genes encoding the extended-spectrum beta-lactamase and QnrS, in waterbirds on the Baltic Sea coast of Poland. Appl. Environ. Microbiol. 76:8126-8134.
    • (2010) Appl. Environ. Microbiol , vol.76 , pp. 8126-8134
    • Literak, I.1
  • 36
    • 34547501670 scopus 로고    scopus 로고
    • Identification of chickenspecific fecal microbial sequences using a metagenomic approach
    • Lu J, Santo Domingo J, Shanks OC. 2007. Identification of chickenspecific fecal microbial sequences using a metagenomic approach. Water Res. 41:3561-3574.
    • (2007) Water Res , vol.41 , pp. 3561-3574
    • Lu, J.1    Santo Domingo, J.2    Shanks, O.C.3


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