메뉴 건너뛰기




Volumn 63, Issue 1, 2012, Pages 170-187

Diversity of Bacterial Communities that Colonize the Filter Units Used for Controlling Plant Pathogens in Soilless Cultures

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; RNA 16S;

EID: 84855653098     PISSN: 00953628     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00248-011-9961-1     Document Type: Article
Times cited : (10)

References (43)
  • 1
  • 4
    • 4444275579 scopus 로고    scopus 로고
    • Retention and removal of the fish pathogenic bacterium Yersinia ruckeri in biological sand filters
    • Bomo AM, Ekeberg D, Stevik TK, Hanssen JF, Frostegård A (2004) Retention and removal of the fish pathogenic bacterium Yersinia ruckeri in biological sand filters. J Appl Microbiol 97: 598-608.
    • (2004) J Appl Microbiol , vol.97 , pp. 598-608
    • Bomo, A.M.1    Ekeberg, D.2    Stevik, T.K.3    Hanssen, J.F.4    Frostegård, A.5
  • 6
    • 0000512774 scopus 로고    scopus 로고
    • Importance and characterization of the biological component in slow filters
    • Brand T, Wohanka W (2001) Importance and characterization of the biological component in slow filters. Acta Hortic 554: 313-321.
    • (2001) Acta Hortic , vol.554 , pp. 313-321
    • Brand, T.1    Wohanka, W.2
  • 7
    • 0037229569 scopus 로고    scopus 로고
    • Molecular characterization of Legionella populations present within slow sand filters used for fungal plant pathogen suppression in horticultural crops
    • Calvo-Bado LA, Morgan JAW, Sergeant M, Pettitt TR, Whipps JM (2003) Molecular characterization of Legionella populations present within slow sand filters used for fungal plant pathogen suppression in horticultural crops. Appl Environ Microb 69: 533-541.
    • (2003) Appl Environ Microb , vol.69 , pp. 533-541
    • Calvo-Bado, L.A.1    Morgan, J.A.W.2    Sergeant, M.3    Pettitt, T.R.4    Whipps, J.M.5
  • 8
    • 0030930388 scopus 로고    scopus 로고
    • Use of rhizosphere carbon sources in sole carbon source tests to discriminate soil microbial communities
    • Campbell CD, Grayston SJ, Hirst DJ (1997) Use of rhizosphere carbon sources in sole carbon source tests to discriminate soil microbial communities. J Microbiol Meth 30: 33-41.
    • (1997) J Microbiol Meth , vol.30 , pp. 33-41
    • Campbell, C.D.1    Grayston, S.J.2    Hirst, D.J.3
  • 9
    • 13544268567 scopus 로고    scopus 로고
    • A new statistical approach for assessing similarity of species composition with incidence and abundance data
    • Chao A, Chazdon RL, Colwell RK, Shen TJ (2005) A new statistical approach for assessing similarity of species composition with incidence and abundance data. Ecol Lett 8: 148-159.
    • (2005) Ecol Lett , vol.8 , pp. 148-159
    • Chao, A.1    Chazdon, R.L.2    Colwell, R.K.3    Shen, T.J.4
  • 10
    • 33750204867 scopus 로고    scopus 로고
    • A dynamic biofilter to remove pathogens during tomato soilless culture
    • Déniel F, Renault D, Tirilly Y, Barbier G, Rey P (2006) A dynamic biofilter to remove pathogens during tomato soilless culture. Agron Sustain Dev 26: 185-193.
    • (2006) Agron Sustain Dev , vol.26 , pp. 185-193
    • Déniel, F.1    Renault, D.2    Tirilly, Y.3    Barbier, G.4    Rey, P.5
  • 11
    • 6344275826 scopus 로고    scopus 로고
    • Inoculations of filter unit with antagonistic- and PGPR-bacteria improve slow filtration efficiency in soilless culture
    • Déniel F, Rey P, Chérif M, Guillou A, Tirilly Y (2004) Inoculations of filter unit with antagonistic- and PGPR-bacteria improve slow filtration efficiency in soilless culture. Can J Microbiol 50: 499-508.
    • (2004) Can J Microbiol , vol.50 , pp. 499-508
    • Déniel, F.1    Rey, P.2    Chérif, M.3    Guillou, A.4    Tirilly, Y.5
  • 13
    • 0034958221 scopus 로고    scopus 로고
    • Disinfestation of recirculating nutrient solutions in greenhouse horticulture
    • Ehret DL, Alsanius B, Wohanka W, Menzies JG, Utkhede R (2001) Disinfestation of recirculating nutrient solutions in greenhouse horticulture. Agronomie 21: 323-339.
    • (2001) Agronomie , vol.21 , pp. 323-339
    • Ehret, D.L.1    Alsanius, B.2    Wohanka, W.3    Menzies, J.G.4    Utkhede, R.5
  • 14
    • 0031955518 scopus 로고    scopus 로고
    • Basecalling of automated sequencer traces using Phred. I. Accuracy assessment
    • Ewing B, Hillier L, Wendl M, Green P (1998) Basecalling of automated sequencer traces using Phred. I. Accuracy assessment. Genome Res 8: 175-185.
    • (1998) Genome Res , vol.8 , pp. 175-185
    • Ewing, B.1    Hillier, L.2    Wendl, M.3    Green, P.4
  • 15
    • 0001260922 scopus 로고
    • Pythium spp. associated with crown rot of cucumbers in British Columbia greenhouses
    • Favrin RJ, Rahe JE, Mauza B (1988) Pythium spp. associated with crown rot of cucumbers in British Columbia greenhouses. Plant Dis 72: 683-687.
    • (1988) Plant Dis , vol.72 , pp. 683-687
    • Favrin, R.J.1    Rahe, J.E.2    Mauza, B.3
  • 16
    • 0029661576 scopus 로고    scopus 로고
    • Analytical approaches to the characterization of samples of microbial communities using patterns of potential C source utilization
    • Garland JL (1996) Analytical approaches to the characterization of samples of microbial communities using patterns of potential C source utilization. Soil Biol Biochem 28: 213-221.
    • (1996) Soil Biol Biochem , vol.28 , pp. 213-221
    • Garland, J.L.1
  • 17
    • 0025919424 scopus 로고
    • Classification and characterization of heterotrophic microbial communities on the basis of patterns of community-level sole-carbon-source utilization
    • Garland JL, Mills AL (1991) Classification and characterization of heterotrophic microbial communities on the basis of patterns of community-level sole-carbon-source utilization. Appl Environ Microb 57: 2351-2359.
    • (1991) Appl Environ Microb , vol.57 , pp. 2351-2359
    • Garland, J.L.1    Mills, A.L.2
  • 18
    • 0030872620 scopus 로고    scopus 로고
    • Molecular microbial diversity of an anaerobic digestor as determined by small-subunit rDNA sequence analysis
    • Godon JJ, Zumstein E, Dabert P, Habouzit F, Moletta R (1997) Molecular microbial diversity of an anaerobic digestor as determined by small-subunit rDNA sequence analysis. Appl Environ Microb 63: 2802-2813.
    • (1997) Appl Environ Microb , vol.63 , pp. 2802-2813
    • Godon, J.J.1    Zumstein, E.2    Dabert, P.3    Habouzit, F.4    Moletta, R.5
  • 19
    • 0000803388 scopus 로고
    • The population frequencies of species and the estimation of population parameters
    • Good IJ (1953) The population frequencies of species and the estimation of population parameters. Biometrika 40: 237-264.
    • (1953) Biometrika , vol.40 , pp. 237-264
    • Good, I.J.1
  • 21
    • 0032694885 scopus 로고    scopus 로고
    • Analysis of the relative abundance of different types of bacteria capable of toluene degradation in a compost biofilter
    • Juteau P, Larocque R, Rho D, LeDuy A (1999) Analysis of the relative abundance of different types of bacteria capable of toluene degradation in a compost biofilter. Appl Microbiol Biot 52: 863-868.
    • (1999) Appl Microbiol Biot , vol.52 , pp. 863-868
    • Juteau, P.1    Larocque, R.2    Rho, D.3    Leduy, A.4
  • 22
    • 13244269924 scopus 로고    scopus 로고
    • Link between spatial structure of microbial communities and degradation of a complex mixture of volatile organic compounds in peat biofilters
    • Khammar N, Malhautier L, Degrange V, Lensi R, Godon JJ, Fanlo JL (2005) Link between spatial structure of microbial communities and degradation of a complex mixture of volatile organic compounds in peat biofilters. J Appl Microbiol 98: 476-490.
    • (2005) J Appl Microbiol , vol.98 , pp. 476-490
    • Khammar, N.1    Malhautier, L.2    Degrange, V.3    Lensi, R.4    Godon, J.J.5    Fanlo, J.L.6
  • 23
    • 0000204642 scopus 로고
    • The potential for spread of root diseases in recirculating hydroponic systems and their control with disinfection
    • McPherson GM, Harriman MR, Pattison D (1995) The potential for spread of root diseases in recirculating hydroponic systems and their control with disinfection. Med Fac Landbouww Univ Gent 60/2b: 371-379.
    • (1995) Med Fac Landbouww Univ Gent , vol.2-60 , pp. 371-379
    • McPherson, G.M.1    Harriman, M.R.2    Pattison, D.3
  • 24
    • 0034029212 scopus 로고    scopus 로고
    • Clostridium peptidivorans sp. nov., a peptide-fermenting bacterium from an olive mill wastewater treatment digester
    • Mechichi T, Fardeau ML, Labat M, Garcia JL, Verhé F, Patel BKC (2000) Clostridium peptidivorans sp. nov., a peptide-fermenting bacterium from an olive mill wastewater treatment digester. Int J Syst Evol Microbiol 50: 1259-1264.
    • (2000) Int J Syst Evol Microbiol , vol.50 , pp. 1259-1264
    • Mechichi, T.1    Fardeau, M.L.2    Labat, M.3    Garcia, J.L.4    Verhé, F.5    Patel, B.K.C.6
  • 25
    • 33745014137 scopus 로고    scopus 로고
    • Bacterial community structure of a pesticide-contaminated site and assessment of changes induced in community structure during bioremediation
    • Paul D, Pandey G, Meier C, van der Meer JR, Jain RK (2006) Bacterial community structure of a pesticide-contaminated site and assessment of changes induced in community structure during bioremediation. FEMS Microbiol Ecol 57: 116-127.
    • (2006) FEMS Microbiol Ecol , vol.57 , pp. 116-127
    • Paul, D.1    Pandey, G.2    Meier, C.3    van der Meer, J.R.4    Jain, R.K.5
  • 26
    • 0029189849 scopus 로고
    • Characteristics and pathogenicity of Pythium spp. associated with root rot of tomatoes in soilless culture in Brittany, France
    • Rafin C, Tirilly Y (1995) Characteristics and pathogenicity of Pythium spp. associated with root rot of tomatoes in soilless culture in Brittany, France. Plant Pathol 44: 779-785.
    • (1995) Plant Pathol , vol.44 , pp. 779-785
    • Rafin, C.1    Tirilly, Y.2
  • 29
    • 34848916145 scopus 로고    scopus 로고
    • Characterization of Bacillus and Pseudomonas strains with suppressive traits isolated from tomato hydroponic-slow filtration
    • Renault D, Tirilly Y, Benizri E, Sohier D, Barbier G, Rey P (2007) Characterization of Bacillus and Pseudomonas strains with suppressive traits isolated from tomato hydroponic-slow filtration unit. Can J Microbiol 53: 784-797.
    • (2007) Can J Microbiol , vol.53 , pp. 784-797
    • Renault, D.1    Tirilly, Y.2    Benizri, E.3    Sohier, D.4    Barbier, G.5    Rey, P.6
  • 30
    • 0031944340 scopus 로고    scopus 로고
    • Ultrastructural and cytochemical investigation of asymptomatic infection by Pythium spp
    • Rey P, Benhamou N, Tirilly Y (1998) Ultrastructural and cytochemical investigation of asymptomatic infection by Pythium spp. Phytopathology 88: 234-244.
    • (1998) Phytopathology , vol.88 , pp. 234-244
    • Rey, P.1    Benhamou, N.2    Tirilly, Y.3
  • 31
    • 0008127196 scopus 로고    scopus 로고
    • Pythium F induce a minor but ubiquitous disease in tomato soilless cultures
    • Rey P, Nodet P, Tirilly Y (1997) Pythium F induce a minor but ubiquitous disease in tomato soilless cultures. J Plant Pathol 79: 173-180.
    • (1997) J Plant Pathol , vol.79 , pp. 173-180
    • Rey, P.1    Nodet, P.2    Tirilly, Y.3
  • 32
    • 33750204574 scopus 로고    scopus 로고
    • Management of bacteria to improve slow filtration efficiency in tomato soilless culture
    • Rey P, Déniel F, Guillou A, Le Quillec S (2005) Management of bacteria to improve slow filtration efficiency in tomato soilless culture. Acta Hortic 691: 349-356.
    • (2005) Acta Hortic , vol.691 , pp. 349-356
    • Rey, P.1    Déniel, F.2    Guillou, A.3    Le Quillec, S.4
  • 33
    • 4344565865 scopus 로고    scopus 로고
    • A new real time PCR (Taqman® PCR) system for detection of the 16S rDNA gene associated with fecal bacteria
    • Rousselon N, Delgenès JP, Godon JJ (2004) A new real time PCR (Taqman® PCR) system for detection of the 16S rDNA gene associated with fecal bacteria. J Microbiol Meth 59: 15-22.
    • (2004) J Microbiol Meth , vol.59 , pp. 15-22
    • Rousselon, N.1    Delgenès, J.P.2    Godon, J.J.3
  • 34
    • 0038521001 scopus 로고    scopus 로고
    • Pseudomonas putida as the dominant toluene-degrading bacterial species during air decontamination by biofiltration
    • Roy S, Gendron J, Delhoménie MC, Bibeau L, Heitz M, Brzezinski R (2003) Pseudomonas putida as the dominant toluene-degrading bacterial species during air decontamination by biofiltration. Appl Microbiol Biot 61: 366-373.
    • (2003) Appl Microbiol Biot , vol.61 , pp. 366-373
    • Roy, S.1    Gendron, J.2    Delhoménie, M.C.3    Bibeau, L.4    Heitz, M.5    Brzezinski, R.6
  • 35
    • 0028313705 scopus 로고
    • Hydroponics, a solution for zoosporic pathogens
    • Stanghellini ME, Rasmussen SL (1994) Hydroponics, a solution for zoosporic pathogens. Plant Dis 78: 1129-1138.
    • (1994) Plant Dis , vol.78 , pp. 1129-1138
    • Stanghellini, M.E.1    Rasmussen, S.L.2
  • 36
    • 0033760479 scopus 로고    scopus 로고
    • Quantitative analysis of small-subunit rRNA genes in mixed microbial populations via 5'-nuclease essays
    • Suzuki MT, Taylor LT, deLong EF (2000) Quantitative analysis of small-subunit rRNA genes in mixed microbial populations via 5'-nuclease essays. Appl Environ Microb 66: 4605-4614.
    • (2000) Appl Environ Microb , vol.66 , pp. 4605-4614
    • Suzuki, M.T.1    Taylor, L.T.2    Delong, E.F.3
  • 37
    • 2942711661 scopus 로고    scopus 로고
    • Clostridum tunisiense sp. nov., a new proteolytic, sulfur-reducing bacterium isolated from an olive mill wastewater contaminated by phosphogypse
    • Thabet OB, Fardeau ML, Joulian C, Thomas P, Hamdi M, Garcia JL, Ollivier B (2004) Clostridum tunisiense sp. nov., a new proteolytic, sulfur-reducing bacterium isolated from an olive mill wastewater contaminated by phosphogypse. Anaerobe 10: 185-190.
    • (2004) Anaerobe , vol.10 , pp. 185-190
    • Thabet, O.B.1    Fardeau, M.L.2    Joulian, C.3    Thomas, P.4    Hamdi, M.5    Garcia, J.L.6    Ollivier, B.7
  • 38
    • 0002305836 scopus 로고    scopus 로고
    • The relationship of Pythium root rot and rhizosphere microorganisms in a closed circulating and an open system in rockwool culture of tomato
    • Tu JC, Papadopoulos AP, Hao X, Zheng J (1999) The relationship of Pythium root rot and rhizosphere microorganisms in a closed circulating and an open system in rockwool culture of tomato. Acta Hort 481: 577-583.
    • (1999) Acta Hort , vol.481 , pp. 577-583
    • Tu, J.C.1    Papadopoulos, A.P.2    Hao, X.3    Zheng, J.4
  • 39
    • 0000770941 scopus 로고    scopus 로고
    • Slow filtration: a potential method for the elimination of pathogens and nematodes in recirculating nutrient solutions from glasshouse-grown crops
    • van Os EA, Amsing JJ, van Kuik AJ, Willers H (1999) Slow filtration: a potential method for the elimination of pathogens and nematodes in recirculating nutrient solutions from glasshouse-grown crops. Acta Hortic 481: 519-526.
    • (1999) Acta Hortic , vol.481 , pp. 519-526
    • van Os, E.A.1    Amsing, J.J.2    van Kuik, A.J.3    Willers, H.4
  • 40
    • 67650457348 scopus 로고    scopus 로고
    • Pythium oligandrum biocontrol in the rhizosphere: influence on fungal and oomycete populations dynamics
    • Vallance J, Le Floch G, Deniel F, Barbier G, Levesque CA, Rey P (2009) Pythium oligandrum biocontrol in the rhizosphere: influence on fungal and oomycete populations dynamics. Appl Environ Microbiol 75: 4790-4800.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 4790-4800
    • Vallance, J.1    Le Floch, G.2    Deniel, F.3    Barbier, G.4    Levesque, C.A.5    Rey, P.6
  • 42
    • 0000633202 scopus 로고
    • Disinfection of recirculating nutrient solutions by slow sand filtration
    • Wohanka W (1995) Disinfection of recirculating nutrient solutions by slow sand filtration. Acta Hortic 382: 246-255.
    • (1995) Acta Hortic , vol.382 , pp. 246-255
    • Wohanka, W.1
  • 43
    • 34548270865 scopus 로고    scopus 로고
    • SAFUM: statistical analysis of SSCP fingerprints using PCA projections, dendrograms and diversity estimators
    • Zemb O, Haegeman B, Delgenes JP, Lebaron P, Godon JJ (2007) SAFUM: statistical analysis of SSCP fingerprints using PCA projections, dendrograms and diversity estimators. Mol Ecol Notes 7: 767-770.
    • (2007) Mol Ecol Notes , vol.7 , pp. 767-770
    • Zemb, O.1    Haegeman, B.2    Delgenes, J.P.3    Lebaron, P.4    Godon, J.J.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.