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Volumn 163, Issue 1, 2012, Pages 108-119

Cis-acting structural element in 5' UTR is essential for infectivity of porcine reproductive and respiratory syndrome virus

Author keywords

5' UTR; Cis acting elements; PRRSV; Stem loop structures; Virus replication

Indexed keywords

CIS ACTING ELEMENT; NUCLEOCAPSID PROTEIN; NUCLEOTIDE; VIRUS RNA;

EID: 84855571319     PISSN: 01681702     EISSN: 18727492     Source Type: Journal    
DOI: 10.1016/j.virusres.2011.08.018     Document Type: Article
Times cited : (20)

References (49)
  • 2
    • 0025049209 scopus 로고
    • A functional ribonucleoprotein complex forms around the 5' end of poliovirus RNA
    • Andino R., Rieckhof G.E., Baltimore D. A functional ribonucleoprotein complex forms around the 5' end of poliovirus RNA. Cell 1990, 63(2):369-380.
    • (1990) Cell , vol.63 , Issue.2 , pp. 369-380
    • Andino, R.1    Rieckhof, G.E.2    Baltimore, D.3
  • 3
    • 0035868852 scopus 로고    scopus 로고
    • 5' cloverleaf in poliovirus RNA is a cis-acting replication element required for negative-strand synthesis
    • Barton D.J., O'Donnell B.J., Flanegan J.B. 5' cloverleaf in poliovirus RNA is a cis-acting replication element required for negative-strand synthesis. EMBO J. 2001, 20(6):1439-1448.
    • (2001) EMBO J. , vol.20 , Issue.6 , pp. 1439-1448
    • Barton, D.J.1    O'Donnell, B.J.2    Flanegan, J.B.3
  • 4
    • 0028236409 scopus 로고
    • Infectious transcripts and cDNA clones of RNA viruses
    • Boyer J.C., Haenni A.L. Infectious transcripts and cDNA clones of RNA viruses. Virology 1994, 198(2):415-426.
    • (1994) Virology , vol.198 , Issue.2 , pp. 415-426
    • Boyer, J.C.1    Haenni, A.L.2
  • 5
    • 0030634897 scopus 로고    scopus 로고
    • Nidovirales: a new order comprising Coronaviridae and Arteriviridae
    • Cavanagh D. Nidovirales: a new order comprising Coronaviridae and Arteriviridae. Arch. Virol. 1997, 142(3):629-633.
    • (1997) Arch. Virol. , vol.142 , Issue.3 , pp. 629-633
    • Cavanagh, D.1
  • 6
    • 30344481122 scopus 로고    scopus 로고
    • Identification of 5' and 3' cis-acting elements of the porcine reproductive and respiratory syndrome virus: acquisition of novel 5' AU-rich sequences restored replication of a 5'-proximal 7-nucleotide deletion mutant
    • Choi Y.J., Yun S.I., Kang S.Y., Lee Y.M. Identification of 5' and 3' cis-acting elements of the porcine reproductive and respiratory syndrome virus: acquisition of novel 5' AU-rich sequences restored replication of a 5'-proximal 7-nucleotide deletion mutant. J. Virol. 2006, 80(2):723-736.
    • (2006) J. Virol. , vol.80 , Issue.2 , pp. 723-736
    • Choi, Y.J.1    Yun, S.I.2    Kang, S.Y.3    Lee, Y.M.4
  • 7
    • 0037314114 scopus 로고    scopus 로고
    • RnaViz 2: an improved representation of RNA secondary structure
    • De Rijk P., Wuyts J., De Wachter R. RnaViz 2: an improved representation of RNA secondary structure. Bioinformatics 2003, 19(2):299-300.
    • (2003) Bioinformatics , vol.19 , Issue.2 , pp. 299-300
    • De Rijk, P.1    Wuyts, J.2    De Wachter, R.3
  • 10
    • 0024507859 scopus 로고
    • Cloning and synthesis of infectious cardiovirus RNAs containing short, discrete poly(C) tracts
    • Duke G.M., Palmenberg A.C. Cloning and synthesis of infectious cardiovirus RNAs containing short, discrete poly(C) tracts. J. Virol. 1989, 63(4):1822-1826.
    • (1989) J. Virol. , vol.63 , Issue.4 , pp. 1822-1826
    • Duke, G.M.1    Palmenberg, A.C.2
  • 13
    • 0344157332 scopus 로고    scopus 로고
    • Cis-acting RNA elements required for replication of bovine viral diarrhea virus-hepatitis C virus 5' nontranslated region chimeras
    • Frolov I., McBride M.S., Rice C.M. cis-acting RNA elements required for replication of bovine viral diarrhea virus-hepatitis C virus 5' nontranslated region chimeras. RNA 1998, 4(11):1418-1435.
    • (1998) RNA , vol.4 , Issue.11 , pp. 1418-1435
    • Frolov, I.1    McBride, M.S.2    Rice, C.M.3
  • 14
    • 0032541485 scopus 로고    scopus 로고
    • A tale of two termini: a functional interaction between the termini of an mRNA is a prerequisite for efficient translation initiation
    • Gallie D.R. A tale of two termini: a functional interaction between the termini of an mRNA is a prerequisite for efficient translation initiation. Gene 1998, 216(1):1-11.
    • (1998) Gene , vol.216 , Issue.1 , pp. 1-11
    • Gallie, D.R.1
  • 15
    • 0033919960 scopus 로고    scopus 로고
    • Poliovirus requires a precise 5' end for efficient positive-strand RNA synthesis
    • Herold J., Andino R. Poliovirus requires a precise 5' end for efficient positive-strand RNA synthesis. J. Virol. 2000, 74(14):6394-6400.
    • (2000) J. Virol. , vol.74 , Issue.14 , pp. 6394-6400
    • Herold, J.1    Andino, R.2
  • 16
    • 0035265836 scopus 로고    scopus 로고
    • Poliovirus RNA replication requires genome circularization through a protein-protein bridge
    • Herold J., Andino R. Poliovirus RNA replication requires genome circularization through a protein-protein bridge. Mol. Cell 2001, 7(3):581-591.
    • (2001) Mol. Cell , vol.7 , Issue.3 , pp. 581-591
    • Herold, J.1    Andino, R.2
  • 17
    • 0023017765 scopus 로고
    • The mechanism of RNA recombination in poliovirus
    • Kirkegaard K., Baltimore D. The mechanism of RNA recombination in poliovirus. Cell 1986, 47(3):433-443.
    • (1986) Cell , vol.47 , Issue.3 , pp. 433-443
    • Kirkegaard, K.1    Baltimore, D.2
  • 18
    • 0025212682 scopus 로고
    • Complete nucleotide sequence of infectious Coxsackievirus B3 cDNA: two initial 5' uridine residues are regained during plus-strand RNA synthesis
    • Klump W.M., Bergmann I., Muller B.C., Ameis D., Kandolf R. Complete nucleotide sequence of infectious Coxsackievirus B3 cDNA: two initial 5' uridine residues are regained during plus-strand RNA synthesis. J. Virol. 1990, 64(4):1573-1583.
    • (1990) J. Virol. , vol.64 , Issue.4 , pp. 1573-1583
    • Klump, W.M.1    Bergmann, I.2    Muller, B.C.3    Ameis, D.4    Kandolf, R.5
  • 20
    • 34247382075 scopus 로고    scopus 로고
    • A U-turn motif-containing stem-loop in the coronavirus 5' untranslated region plays a functional role in replication
    • Liu P., Li L., Millership J.J., Kang H., Leibowitz J.L., Giedroc D.P. A U-turn motif-containing stem-loop in the coronavirus 5' untranslated region plays a functional role in replication. RNA 2007, 13(5):763-780.
    • (2007) RNA , vol.13 , Issue.5 , pp. 763-780
    • Liu, P.1    Li, L.2    Millership, J.J.3    Kang, H.4    Leibowitz, J.L.5    Giedroc, D.P.6
  • 21
    • 71849107774 scopus 로고    scopus 로고
    • Cis-acting RNA elements in human and animal plus-strand RNA viruses
    • Liu Y., Wimmer E., Paul A.V. Cis-acting RNA elements in human and animal plus-strand RNA viruses. Biochim. Biophys. Acta 2009, 1789(9-10):495-517.
    • (2009) Biochim. Biophys. Acta , vol.1789 , Issue.9-10 , pp. 495-517
    • Liu, Y.1    Wimmer, E.2    Paul, A.V.3
  • 22
    • 79955125674 scopus 로고    scopus 로고
    • A 5'-proximal stem-loop structure of 5' untranslated region of porcine reproductive and respiratory syndrome virus genome is key for virus replication
    • Lu J., Gao F., Wei Z., Liu P., Liu C., Zheng H., Li Y., Lin T., Yuan S. A 5'-proximal stem-loop structure of 5' untranslated region of porcine reproductive and respiratory syndrome virus genome is key for virus replication. Virol. J. 2011, 8:172.
    • (2011) Virol. J. , vol.8 , pp. 172
    • Lu, J.1    Gao, F.2    Wei, Z.3    Liu, P.4    Liu, C.5    Zheng, H.6    Li, Y.7    Lin, T.8    Yuan, S.9
  • 23
    • 52649180971 scopus 로고    scopus 로고
    • An infectious cDNA clone of a highly pathogenic porcine reproductive and respiratory syndrome virus variant associated with porcine high fever syndrome
    • (Pt 9)
    • Lv J., Zhang J., Sun Z., Liu W., Yuan S. An infectious cDNA clone of a highly pathogenic porcine reproductive and respiratory syndrome virus variant associated with porcine high fever syndrome. J. Gen. Virol. 2008, 89:2075-2079. (Pt 9).
    • (2008) J. Gen. Virol. , vol.89 , pp. 2075-2079
    • Lv, J.1    Zhang, J.2    Sun, Z.3    Liu, W.4    Yuan, S.5
  • 24
    • 0031985681 scopus 로고    scopus 로고
    • Infectious transcripts from cloned genome-length cDNA of porcine reproductive and respiratory syndrome virus
    • Meulenberg J.J., Bos-de Ruijter J.N., van de Graaf R., Wensvoort G., Moormann R.J. Infectious transcripts from cloned genome-length cDNA of porcine reproductive and respiratory syndrome virus. J. Virol. 1998, 72(1):380-387.
    • (1998) J. Virol. , vol.72 , Issue.1 , pp. 380-387
    • Meulenberg, J.J.1    Bos-de Ruijter, J.N.2    van de Graaf, R.3    Wensvoort, G.4    Moormann, R.J.5
  • 26
    • 0037333396 scopus 로고    scopus 로고
    • Generation of an infectious clone of VR-2332, a highly virulent North American-type isolate of porcine reproductive and respiratory syndrome virus
    • Nielsen H.S., Liu G., Nielsen J., Oleksiewicz M.B., Botner A., Storgaard T., Faaberg K.S. Generation of an infectious clone of VR-2332, a highly virulent North American-type isolate of porcine reproductive and respiratory syndrome virus. J. Virol. 2003, 77(6):3702-3711.
    • (2003) J. Virol. , vol.77 , Issue.6 , pp. 3702-3711
    • Nielsen, H.S.1    Liu, G.2    Nielsen, J.3    Oleksiewicz, M.B.4    Botner, A.5    Storgaard, T.6    Faaberg, K.S.7
  • 27
    • 33744789955 scopus 로고    scopus 로고
    • Nidovirus transcription: how to make sense
    • (Pt 6)
    • Pasternak A.O., Spaan W.J., Snijder E.J. Nidovirus transcription: how to make sense. J. Gen. Virol. 2006, 87:1403-1421. (Pt 6).
    • (2006) J. Gen. Virol. , vol.87 , pp. 1403-1421
    • Pasternak, A.O.1    Spaan, W.J.2    Snijder, E.J.3
  • 28
    • 0037126614 scopus 로고    scopus 로고
    • Sequence requirements for RNA strand transfer during nidovirus discontinuous subgenomic RNA synthesis
    • Pasternak A.O., van den Born E., Spaan W.J., Snijder E.J. Sequence requirements for RNA strand transfer during nidovirus discontinuous subgenomic RNA synthesis. EMBO J. 2001, 20(24):7220-7228.
    • (2001) EMBO J. , vol.20 , Issue.24 , pp. 7220-7228
    • Pasternak, A.O.1    van den Born, E.2    Spaan, W.J.3    Snijder, E.J.4
  • 30
    • 0000533383 scopus 로고
    • Sampling variation of the fifty percent end-point, determined by the Reed-Muench (Behrens) method
    • Pizzi M. Sampling variation of the fifty percent end-point, determined by the Reed-Muench (Behrens) method. Hum. Biol. 1950, 22(3):151-190.
    • (1950) Hum. Biol. , vol.22 , Issue.3 , pp. 151-190
    • Pizzi, M.1
  • 31
    • 0031060497 scopus 로고    scopus 로고
    • Internal entry of ribosomes is directed by the 5' noncoding region of classical swine fever virus and is dependent on the presence of an RNA pseudoknot upstream of the initiation codon
    • Rijnbrand R., van der Straaten T., van Rijn P.A., Spaan W.J., Bredenbeek P.J. Internal entry of ribosomes is directed by the 5' noncoding region of classical swine fever virus and is dependent on the presence of an RNA pseudoknot upstream of the initiation codon. J. Virol. 1997, 71(1):451-457.
    • (1997) J. Virol. , vol.71 , Issue.1 , pp. 451-457
    • Rijnbrand, R.1    van der Straaten, T.2    van Rijn, P.A.3    Spaan, W.J.4    Bredenbeek, P.J.5
  • 32
    • 0029444973 scopus 로고
    • Coronaviruses use discontinuous extension for synthesis of subgenome-length negative strands
    • Sawicki S.G., Sawicki D.L. Coronaviruses use discontinuous extension for synthesis of subgenome-length negative strands. Adv. Exp. Med. Biol. 1995, 380:499-506.
    • (1995) Adv. Exp. Med. Biol. , vol.380 , pp. 499-506
    • Sawicki, S.G.1    Sawicki, D.L.2
  • 33
    • 0035699597 scopus 로고    scopus 로고
    • Arterivirus RNA synthesis dissected nucleotides, membranes, amino acids, and a bit of zinc
    • Snijder E.J. Arterivirus RNA synthesis dissected nucleotides, membranes, amino acids, and a bit of zinc. Adv. Exp. Med. Biol. 2001, 494:241-253.
    • (2001) Adv. Exp. Med. Biol. , vol.494 , pp. 241-253
    • Snijder, E.J.1
  • 34
    • 0031925071 scopus 로고    scopus 로고
    • The molecular biology of arteriviruses
    • Snijder E.J., Meulenberg J.J. The molecular biology of arteriviruses. J. Gen. Virol. 1998, 79(Pt 5):961-979.
    • (1998) J. Gen. Virol. , vol.79 , Issue.PART 5 , pp. 961-979
    • Snijder, E.J.1    Meulenberg, J.J.2
  • 35
    • 78649335092 scopus 로고    scopus 로고
    • Identification of dispensable nucleotide sequence in 3' untranslated region of porcine reproductive and respiratory syndrome virus
    • Sun Z., Liu C., Tan F., Gao F., Liu P., Qin A., Yuan S. Identification of dispensable nucleotide sequence in 3' untranslated region of porcine reproductive and respiratory syndrome virus. Virus Res. 2010, 154(1-2):38-47.
    • (2010) Virus Res. , vol.154 , Issue.1-2 , pp. 38-47
    • Sun, Z.1    Liu, C.2    Tan, F.3    Gao, F.4    Liu, P.5    Qin, A.6    Yuan, S.7
  • 36
    • 56349139135 scopus 로고    scopus 로고
    • Identification of porcine reproductive and respiratory syndrome virus regulation sequence in 3'-untranslated region
    • Sun Z., Wang J.Y., Zhang J.W., Qin A.J., Yuan S.S. Identification of porcine reproductive and respiratory syndrome virus regulation sequence in 3'-untranslated region. Wei Sheng Wu Xue Bao 2007, 47(5):774-778.
    • (2007) Wei Sheng Wu Xue Bao , vol.47 , Issue.5 , pp. 774-778
    • Sun, Z.1    Wang, J.Y.2    Zhang, J.W.3    Qin, A.J.4    Yuan, S.S.5
  • 37
    • 47049093763 scopus 로고    scopus 로고
    • Identification of mutated cyclization sequences that permit efficient replication of West Nile virus genomes: use in safer propagation of a novel vaccine candidate
    • Suzuki R., Fayzulin R., Frolov I., Mason P.W. Identification of mutated cyclization sequences that permit efficient replication of West Nile virus genomes: use in safer propagation of a novel vaccine candidate. J. Virol. 2008, 82(14):6942-6951.
    • (2008) J. Virol. , vol.82 , Issue.14 , pp. 6942-6951
    • Suzuki, R.1    Fayzulin, R.2    Frolov, I.3    Mason, P.W.4
  • 39
    • 1242318840 scopus 로고    scopus 로고
    • Secondary structure and function of the 5'-proximal region of the equine arteritis virus RNA genome
    • Van Den Born E., Gultyaev A.P., Snijder E.J. Secondary structure and function of the 5'-proximal region of the equine arteritis virus RNA genome. RNA 2004, 10(3):424-437.
    • (2004) RNA , vol.10 , Issue.3 , pp. 424-437
    • Van Den Born, E.1    Gultyaev, A.P.2    Snijder, E.J.3
  • 40
    • 18144393022 scopus 로고    scopus 로고
    • Discontinuous subgenomic RNA synthesis in arteriviruses is guided by an RNA hairpin structure located in the genomic leader region
    • Van Den Born E., Posthuma C.C., Gultyaev A.P., Snijder E.J. Discontinuous subgenomic RNA synthesis in arteriviruses is guided by an RNA hairpin structure located in the genomic leader region. J. Virol. 2005, 79(10):6312-6324.
    • (2005) J. Virol. , vol.79 , Issue.10 , pp. 6312-6324
    • Van Den Born, E.1    Posthuma, C.C.2    Gultyaev, A.P.3    Snijder, E.J.4
  • 41
    • 0032718485 scopus 로고    scopus 로고
    • Arterivirus discontinuous mRNA transcription is guided by base pairing between sense and antisense transcription-regulating sequences
    • van Marle G., Dobbe J.C., Gultyaev A.P., Luytjes W., Spaan W.J., Snijder E.J. Arterivirus discontinuous mRNA transcription is guided by base pairing between sense and antisense transcription-regulating sequences. Proc. Natl. Acad. Sci. U.S.A. 1999, 96(21):12056-12061.
    • (1999) Proc. Natl. Acad. Sci. U.S.A. , vol.96 , Issue.21 , pp. 12056-12061
    • van Marle, G.1    Dobbe, J.C.2    Gultyaev, A.P.3    Luytjes, W.4    Spaan, W.J.5    Snijder, E.J.6
  • 42
    • 0034782485 scopus 로고    scopus 로고
    • Viable porcine arteriviruses with deletions proximal to the 3' end of the genome
    • Verheije M.H., Kroese M.V., Rottier P.J., Meulenberg J.J. Viable porcine arteriviruses with deletions proximal to the 3' end of the genome. J. Gen. Virol. 2001, 82(Pt 11):2607-2614.
    • (2001) J. Gen. Virol. , vol.82 , Issue.PART 11 , pp. 2607-2614
    • Verheije, M.H.1    Kroese, M.V.2    Rottier, P.J.3    Meulenberg, J.J.4
  • 43
    • 0036149165 scopus 로고    scopus 로고
    • Kissing interaction between 3' noncoding and coding sequences is essential for porcine arterivirus RNA replication
    • Verheije M.H., Olsthoorn R.C., Kroese M.V., Rottier P.J., Meulenberg J.J. Kissing interaction between 3' noncoding and coding sequences is essential for porcine arterivirus RNA replication. J. Virol. 2002, 76(3):1521-1526.
    • (2002) J. Virol. , vol.76 , Issue.3 , pp. 1521-1526
    • Verheije, M.H.1    Olsthoorn, R.C.2    Kroese, M.V.3    Rottier, P.J.4    Meulenberg, J.J.5
  • 44
    • 57149086437 scopus 로고    scopus 로고
    • Reverse genetic manipulation of the overlapping coding regions for structural proteins of the type II porcine reproductive and respiratory syndrome virus
    • Yu D., Lv J., Sun Z., Zheng H., Lu J., Yuan S. Reverse genetic manipulation of the overlapping coding regions for structural proteins of the type II porcine reproductive and respiratory syndrome virus. Virology 2009, 383(1):22-31.
    • (2009) Virology , vol.383 , Issue.1 , pp. 22-31
    • Yu, D.1    Lv, J.2    Sun, Z.3    Zheng, H.4    Lu, J.5    Yuan, S.6
  • 45
    • 0035814019 scopus 로고    scopus 로고
    • Complete genome comparison of porcine reproductive and respiratory syndrome virus parental and attenuated strains
    • Yuan S., Mickelson D., Murtaugh M.P., Faaberg K.S. Complete genome comparison of porcine reproductive and respiratory syndrome virus parental and attenuated strains. Virus Res. 2001, 79(1-2):189-200.
    • (2001) Virus Res. , vol.79 , Issue.1-2 , pp. 189-200
    • Yuan, S.1    Mickelson, D.2    Murtaugh, M.P.3    Faaberg, K.S.4
  • 46
    • 38849166709 scopus 로고    scopus 로고
    • Construction of infectious cDNA clones of PRRSV: separation of coding regions for nonstructural and structural proteins
    • Yuan S., Wei Z. Construction of infectious cDNA clones of PRRSV: separation of coding regions for nonstructural and structural proteins. Sci. China C Life Sci. 2008, 51(3):271-279.
    • (2008) Sci. China C Life Sci. , vol.51 , Issue.3 , pp. 271-279
    • Yuan, S.1    Wei, Z.2
  • 47
    • 75149148760 scopus 로고    scopus 로고
    • Recombinant PRRSV expressing porcine circovirus sequence reveals novel aspect of transcriptional control of porcine arterivirus
    • Zheng H., Sun Z., Zhu X.Q., Long J., Lu J., Lv J., Yuan S. Recombinant PRRSV expressing porcine circovirus sequence reveals novel aspect of transcriptional control of porcine arterivirus. Virus Res. 2010, 148(1-2):8-16.
    • (2010) Virus Res. , vol.148 , Issue.1-2 , pp. 8-16
    • Zheng, H.1    Sun, Z.2    Zhu, X.Q.3    Long, J.4    Lu, J.5    Lv, J.6    Yuan, S.7
  • 48
    • 78649317975 scopus 로고    scopus 로고
    • Porcine reproductive and respiratory syndrome in China
    • Zhou L., Yang H. Porcine reproductive and respiratory syndrome in China. Virus Res. 2010, 154(1-2):31-37.
    • (2010) Virus Res. , vol.154 , Issue.1-2 , pp. 31-37
    • Zhou, L.1    Yang, H.2
  • 49
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • Zuker M. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res. 2003, 31(13):3406-3415.
    • (2003) Nucleic Acids Res. , vol.31 , Issue.13 , pp. 3406-3415
    • Zuker, M.1


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