메뉴 건너뛰기




Volumn 7, Issue 1, 2012, Pages

Transcriptome-based differentiation of closely-related Miscanthus lines

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA; TRANSCRIPTOME; MESSENGER RNA;

EID: 84855570561     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0029850     Document Type: Article
Times cited : (21)

References (27)
  • 1
    • 21544465618 scopus 로고    scopus 로고
    • CAPS markers improved by cluster specific amplification for identification of octoploid strawberry (Fragaria × ananassa Duch.) cultivars, and their disomic inheritance
    • Kunihisa M, Fukino N, Matsumoto S, (2005) CAPS markers improved by cluster specific amplification for identification of octoploid strawberry (Fragaria × ananassa Duch.) cultivars, and their disomic inheritance. Theor Appl Genet 110: 1410-1418.
    • (2005) Theor Appl Genet , vol.110 , pp. 1410-1418
    • Kunihisa, M.1    Fukino, N.2    Matsumoto, S.3
  • 2
    • 77955174748 scopus 로고    scopus 로고
    • Discovery of single nucleotide polymorphism in Capsicum and SNP markers for cultivar identification
    • Jung J, Park S, Liu W, Kang B, (2010) Discovery of single nucleotide polymorphism in Capsicum and SNP markers for cultivar identification. Euphytica 175: 91-107.
    • (2010) Euphytica , vol.175 , pp. 91-107
    • Jung, J.1    Park, S.2    Liu, W.3    Kang, B.4
  • 4
    • 33747835649 scopus 로고    scopus 로고
    • Distribution of DArT, AFLP, and SSR markers in a genetic linkage map of a doubled-haploid hexaploid wheat population
    • Semagn K, Bjornstad A, Skinnes H, Maroy AG, Tarkegne Y, et al. (2006) Distribution of DArT, AFLP, and SSR markers in a genetic linkage map of a doubled-haploid hexaploid wheat population. Genome 49: 545-555.
    • (2006) Genome , vol.49 , pp. 545-555
    • Semagn, K.1    Bjornstad, A.2    Skinnes, H.3    Maroy, A.G.4    Tarkegne, Y.5
  • 6
    • 77950453770 scopus 로고    scopus 로고
    • Shotguns and SNPs: how fast and cheap sequencing is revolutionizing plant biology
    • Rounsley SD, Last RL, (2010) Shotguns and SNPs: how fast and cheap sequencing is revolutionizing plant biology. Plant J 61: 922-927.
    • (2010) Plant J , vol.61 , pp. 922-927
    • Rounsley, S.D.1    Last, R.L.2
  • 7
    • 23044533391 scopus 로고    scopus 로고
    • Phylogenetics of Miscanthus, Saccharum and related genera (Saccharinae, Andropogoneae, Poaceae) based on DNA sequences from ITS nuclear ribosomal DNA and plastid trnLintron and trnL-F intergenic spacers
    • Hodkinson TR, Chase MW, Lledo MD, Salamin N, Renvoize SA, (2002) Phylogenetics of Miscanthus, Saccharum and related genera (Saccharinae, Andropogoneae, Poaceae) based on DNA sequences from ITS nuclear ribosomal DNA and plastid trnLintron and trnL-F intergenic spacers. J Plant Res 115: 381-392.
    • (2002) J Plant Res , vol.115 , pp. 381-392
    • Hodkinson, T.R.1    Chase, M.W.2    Lledo, M.D.3    Salamin, N.4    Renvoize, S.A.5
  • 8
    • 73949098219 scopus 로고    scopus 로고
    • Agronomic experiences with Miscanthus × giganteus in Illinois, USA
    • Pyter R, Heaton E, Dohleman F, Voigt T, Long S, (2009) Agronomic experiences with Miscanthus × giganteus in Illinois, USA. Methods Mol Biol 581: 41-52.
    • (2009) Methods Mol Biol , vol.581 , pp. 41-52
    • Pyter, R.1    Heaton, E.2    Dohleman, F.3    Voigt, T.4    Long, S.5
  • 9
    • 48849097974 scopus 로고    scopus 로고
    • Meeting US biofuel goals with less land: the potential of Miscanthus
    • Heaton EA, Dohleman FG, Long SP, (2008) Meeting US biofuel goals with less land: the potential of Miscanthus. Global Change Biology 14: 2000-2014.
    • (2008) Global Change Biology , vol.14 , pp. 2000-2014
    • Heaton, E.A.1    Dohleman, F.G.2    Long, S.P.3
  • 10
    • 79960017191 scopus 로고    scopus 로고
    • Characterization of the small RNA component of the transcriptome from grain and sweet sorghum stems
    • Calvino M, Bruggmann R, Messing J, (2011) Characterization of the small RNA component of the transcriptome from grain and sweet sorghum stems. BMC Genomics 12: 356.
    • (2011) BMC Genomics , vol.12 , pp. 356
    • Calvino, M.1    Bruggmann, R.2    Messing, J.3
  • 11
    • 77953225899 scopus 로고    scopus 로고
    • Genomic and small RNA sequencing of Miscanthus × giganteus shows the utility of sorghum as a reference genome sequence for Andropogoneae grasses
    • Swaminathan K, Alabady MS, Varala K, De Paoli E, Ho I, et al. (2010) Genomic and small RNA sequencing of Miscanthus × giganteus shows the utility of sorghum as a reference genome sequence for Andropogoneae grasses. Genome Biol 11: R12.
    • (2010) Genome Biol , vol.11
    • Swaminathan, K.1    Alabady, M.S.2    Varala, K.3    de Paoli, E.4    Ho, I.5
  • 13
    • 0037373275 scopus 로고    scopus 로고
    • Discovering genotypes underlying human phenotypes: past successes for Mendelian disease, future approaches for complex disease
    • Botstein D, Risch N, (2003) Discovering genotypes underlying human phenotypes: past successes for Mendelian disease, future approaches for complex disease. Nat Genet 33 (Suppl): 228-237.
    • (2003) Nat Genet , vol.33 , Issue.SUPPL. , pp. 228-237
    • Botstein, D.1    Risch, N.2
  • 14
    • 84855575030 scopus 로고    scopus 로고
    • The role of genetic diversity in sustainable agriculture
    • Oppong-Konadu E, Adu-Dapaah H, (1998) The role of genetic diversity in sustainable agriculture. Ghana J Agric Sci 31: 231-240.
    • (1998) Ghana J Agric Sci , vol.31 , pp. 231-240
    • Oppong-Konadu, E.1    Adu-Dapaah, H.2
  • 15
    • 4344622791 scopus 로고    scopus 로고
    • Cultivar mixtures for the simultaneous management of multiple diseases: tan spot and leaf rust of wheat
    • Cox CM, Garrett KA, Bowden RL, Fritz AK, Dendy SP, et al. (2004) Cultivar mixtures for the simultaneous management of multiple diseases: tan spot and leaf rust of wheat. Phytopathology 94: 961-969.
    • (2004) Phytopathology , vol.94 , pp. 961-969
    • Cox, C.M.1    Garrett, K.A.2    Bowden, R.L.3    Fritz, A.K.4    Dendy, S.P.5
  • 16
    • 43149115851 scopus 로고    scopus 로고
    • Velvet: algorithms for de novo short read assembly using de Bruijn graphs
    • Zerbino DR, Birney E, (2008) Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res 18: 821-829.
    • (2008) Genome Res , vol.18 , pp. 821-829
    • Zerbino, D.R.1    Birney, E.2
  • 20
    • 77954526823 scopus 로고    scopus 로고
    • The case for cloud computing in genome informatics
    • Stein LD, (2010) The case for cloud computing in genome informatics. Genome Biol 11: 207.
    • (2010) Genome Biol , vol.11 , pp. 207
    • Stein, L.D.1
  • 22
    • 0036092171 scopus 로고    scopus 로고
    • Gramene: development and integration of trait and gene ontologies for rice
    • Jaiswal P, Ware D, Ni J, Chang K, Zhao W, et al. (2002) Gramene: development and integration of trait and gene ontologies for rice. Comp Funct Genomics 3: 132-136.
    • (2002) Comp Funct Genomics , vol.3 , pp. 132-136
    • Jaiswal, P.1    Ware, D.2    Ni, J.3    Chang, K.4    Zhao, W.5
  • 23
    • 55549097836 scopus 로고    scopus 로고
    • Mapping short DNA sequencing reads and calling variants using mapping quality scores
    • Li H, Ruan J, Durbin R, (2008) Mapping short DNA sequencing reads and calling variants using mapping quality scores. Genome Res 18: 1851-1858.
    • (2008) Genome Res , vol.18 , pp. 1851-1858
    • Li, H.1    Ruan, J.2    Durbin, R.3
  • 24
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
    • Tamura K, Dudley J, Nei M, Kumar S, (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 24: 1596-1599.
    • (2007) Mol Biol Evol , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 25
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory efficient alignment of short DNA sequences to the human genome
    • Langmead B, Trapnell C, Pop M, Salzberg SL, (2009) Ultrafast and memory efficient alignment of short DNA sequences to the human genome. Genome Biol 10: R25.
    • (2009) Genome Biol , vol.10
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 26
    • 75849158230 scopus 로고    scopus 로고
    • The Gene Ontology in 2010: extensions and refinements
    • Gene Ontology Consortium
    • Gene Ontology Consortium (2010) The Gene Ontology in 2010: extensions and refinements. Nucleic Acids Res 38: D331-D335.
    • (2010) Nucleic Acids Res , vol.38
  • 27


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.