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Volumn 4, Issue 1, 2012, Pages 509-514

Molecular modelling studies of binding of daca derivatives into G-quadruplex DNA: Comparison offorce field and quantum polarized ligand docking methods

Author keywords

Force field; G quadruplex DNA; Molecular docking; Quantum mechanics; Quantum mechanics molecular mechanics hybrid simulations

Indexed keywords

ACRIDINE DERIVATIVE; DIMETHYL AMINO ETHYL ACRIDINE; DRUG RECEPTOR; GUANINE QUADRUPLEX; UNCLASSIFIED DRUG;

EID: 84855501898     PISSN: None     EISSN: 09751491     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (4)

References (12)
  • 2
    • 70349934530 scopus 로고    scopus 로고
    • Extension of QM/MM docking and its applications to metalloproteins
    • Cho AE, Rinaldo D. Extension of QM/MM docking and its applications to metalloproteins. J Comput Chem 2009;30:2609-2616.
    • (2009) J Comput Chem , vol.30 , pp. 2609-2616
    • Cho, A.E.1    Rinaldo, D.2
  • 3
    • 0037427245 scopus 로고    scopus 로고
    • Structure of the first parallel DNA quadruplex-drug complex
    • Clark GR, Pytel PD, Squire CJ, Neidle S. Structure of the first parallel DNA quadruplex-drug complex. J Am Chem Soc 2003;125:4066-4067.
    • (2003) J Am Chem Soc , vol.125 , pp. 4066-4067
    • Clark, G.R.1    Pytel, P.D.2    Squire, C.J.3    Neidle, S.4
  • 4
    • 84855475616 scopus 로고    scopus 로고
    • Glide, version 5.5, Schrödinger, Inc, New York, NY
    • Glide, version 5.5, Schrödinger, Inc, New York, NY, 2009.
    • (2009)
  • 5
    • 84855511885 scopus 로고    scopus 로고
    • Jaguar, version 7.8, Schrödinger, Inc, New York, NY
    • Jaguar, version 7.8, Schrödinger, Inc, New York, NY, 2011.
    • (2011)
  • 6
    • 0000189651 scopus 로고
    • Density-functional thermochemistry. III. The role of exact exchange
    • Becke AD. Density-functional thermochemistry. III. The role of exact exchange. J Chem Phys 1993;98:5648-5652.
    • (1993) J Chem Phys , vol.98 , pp. 5648-5652
    • Becke, A.D.1
  • 7
    • 0345491105 scopus 로고    scopus 로고
    • Development of the Colle-Salvetti correlation-energy formula into a functional of the electron density
    • Lee C, Yang W, Parr RG Development of the Colle-Salvetti correlation-energy formula into a functional of the electron density. Phys Rev B 1998;37:785-789.
    • (1998) Phys Rev B , vol.37 , pp. 785-789
    • Lee, C.1    Yang, W.2    Parr, R.G.3
  • 8
    • 0000216001 scopus 로고
    • Accurate spin-dependent electron liquid correlation energies for local spin density calculations: A critical analysis
    • Vosko SH, Wilk L, Nusair M. Accurate spin-dependent electron liquid correlation energies for local spin density calculations: a critical analysis. Can J Phys 1980;58:1200-1211.
    • (1980) Can J Phys , vol.58 , pp. 1200-1211
    • Vosko, S.H.1    Wilk, L.2    Nusair, M.3
  • 9
    • 33751157732 scopus 로고
    • Ab initio calculation of vibrational absorption and circular dichroism spectra using density functional force fields
    • Stephens PJ, Devlin FJ, Chabalowski CF, Frish MJ. Ab initio calculation of vibrational absorption and circular dichroism spectra using density functional force fields. J PhysChem 1994;98:11623-11627.
    • (1994) J PhysChem , vol.98 , pp. 11623-11627
    • Stephens, P.J.1    Devlin, F.J.2    Chabalowski, C.F.3    Frish, M.J.4
  • 10
    • 84855487046 scopus 로고    scopus 로고
    • LigPrep, version 2.5, Schrödinger, LLC, New York, NY
    • LigPrep, version 2.5, Schrödinger, LLC, New York, NY, 2011.
    • (2011)
  • 11
    • 33645941402 scopus 로고    scopus 로고
    • The OPLS force field for proteins. Energy minimizations for crystals of cyclic peptides and crambin
    • Jorgensen WL, Tirado-Rives J. The OPLS force field for proteins. Energy minimizations for crystals of cyclic peptides and crambin. J Am Chem Soc 1998;110:1657-1666.
    • (1998) J Am Chem Soc , vol.110 , pp. 1657-1666
    • Jorgensen, W.L.1    Tirado-Rives, J.2
  • 12
    • 0029912748 scopus 로고    scopus 로고
    • Development and testing of the OPLS all-atom force field on conformational energetics and properties of organic liquids
    • Jorgensen WL, Maxwell DS, Tirado-Rives J. Development and testing of the OPLS all-atom force field on conformational energetics and properties of organic liquids. J Am ChemSoc 1996;118(45):11225-11236.
    • (1996) J Am ChemSoc , vol.118 , Issue.45 , pp. 11225-11236
    • Jorgensen, W.L.1    Maxwell, D.S.2    Tirado-Rives, J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.