Use of dried blood spots for the determination of genetic variation of interleukin-10, killer immunoglobulin-like receptor and HLA class I genes

Tissue Antigens

Volumn 79, Issue 2, 2012, Pages 114-122

  Ndlovu, B G ^a   Danaviah, S ^b   Moodley, E ^a   Ghebremichael, M ^c   Bland, R ^b   Viljoen, J ^b   Newell, M L ^b   Ndung'u, T ^a   Carr, W H ^a,c  

^a UNIVERSITY OF KWAZULU NATAL   (South Africa)

^b UNIVERSITY OF KWAZULU NATAL   (South Africa)

^c HARVARD UNIVERSITY   (United States)

Author keywords

Dried blood spots; Human leukocyte antigen class I; Killer immunoglobulin like receptor genotyping; Whole genome amplification

Indexed keywords

GENOMIC DNA; HLA DRB1 ANTIGEN; INTERLEUKIN 10; KILLER CELL IMMUNOGLOBULIN LIKE RECEPTOR; KILLER CELL IMMUNOGLOBULIN LIKE RECEPTOR 2DL1; KILLER CELL IMMUNOGLOBULIN LIKE RECEPTOR 2DL2; KILLER CELL IMMUNOGLOBULIN LIKE RECEPTOR 2DL3; KILLER CELL IMMUNOGLOBULIN LIKE RECEPTOR 2DL4; KILLER CELL IMMUNOGLOBULIN LIKE RECEPTOR 2DL5; KILLER CELL IMMUNOGLOBULIN LIKE RECEPTOR 2DS1; KILLER CELL IMMUNOGLOBULIN LIKE RECEPTOR 2DS2; KILLER CELL IMMUNOGLOBULIN LIKE RECEPTOR 2DS3; KILLER CELL IMMUNOGLOBULIN LIKE RECEPTOR 2DS4; KILLER CELL IMMUNOGLOBULIN LIKE RECEPTOR 3DL1; KILLER CELL IMMUNOGLOBULIN LIKE RECEPTOR 3DL2; KILLER CELL IMMUNOGLOBULIN LIKE RECEPTOR 3DL3; KILLER CELL IMMUNOGLOBULIN LIKE RECEPTOR 3DS1; UNCLASSIFIED DRUG;

ADOLESCENT; ADULT; ARTICLE; CLINICAL ARTICLE; DNA SEQUENCE; DRIED BLOOD SPOT TESTING; FEMALE; GENE AMPLIFICATION; GENETIC VARIABILITY; GENOTYPE; HUMAN; HUMAN IMMUNODEFICIENCY VIRUS 1; HUMAN IMMUNODEFICIENCY VIRUS 1 INFECTION; POLYMERASE CHAIN REACTION; PREGNANT WOMAN; PRIORITY JOURNAL; SOUTH AFRICA;

ADOLESCENT; ADULT; DNA; DNA FINGERPRINTING; DRIED BLOOD SPOT TESTING; FEMALE; GENETIC VARIATION; GENOTYPE; HISTOCOMPATIBILITY ANTIGENS CLASS I; HUMANS; INTERLEUKIN-10; MIDDLE AGED; POLYMERASE CHAIN REACTION; PREGNANCY; PROTEIN ISOFORMS; RECEPTORS, KIR; SENSITIVITY AND SPECIFICITY;

EID: 84855498172     PISSN: 00012815     EISSN: 13990039     Source Type: Journal    
DOI: 10.1111/j.1399-0039.2011.01807.x     Document Type: Article

References (24)

1. Fischer A, Lejczak C, Lambert C et al. Simple DNA extraction method for dried blood spots and comparison of two PCR assays for diagnosis of vertical human immunodeficiency virus type 1 transmission in Rwanda. J Clin Microbiol 2004: 42: 16-20.
2. Bland R, Coovadia H, Coutsoudis A, Rollins N, Newell M. Cohort profile: mamanengane or the Africa centre vertical transmission study. Int J Epidemiol 2010: 39: 351-60.
3. Coovadia HM, Rollins NC, Bland RM et al. Mother-to-child transmission of HIV-1 infection during exclusive breastfeeding in the first 6 months of life: an intervention cohort study. Lancet 2007: 369: 1107-16.
4. Jacob SM, Anitha D, Vishwanath R, Parameshwari S, Samuel NM. The use of dried blood spots on filter paper for the diagnosis of HIV-1 in infants born to HIV seropositive women. Indian J Med Microbiol 2008: 26: 71-4.
5. Sjoholm MI, Dillner J, Carlson J. Assessing quality and functionality of DNA from fresh and archival dried blood spots and recommendations for quality control guidelines. Clin Chem 2007: 53: 1401-7.
6. Singh KK, Spector SA. Fidelity of whole-genome amplification of blood spot DNA for HLA typing and SNP analyses. Clin Genet 2007: 72: 156-9.
7. Wijnen PA, Op den Buijsch RA, Cheung SC et al. Genotyping with a dried blood spot method: a useful technique for application in pharmacogenetics. Clin Chim Acta 2008: 388: 189-91.
8. Chainonthee W, Bottcher G, Gagne K, Fussel M, Bignon JD, Wassmuth R. Improved KIR gene and HLA-C KIR ligand sequence-specific primer polymerase chain reaction genotyping using whole genome amplification. Tissue Antigens 2010: 76: 135-43.
9. Lovmar L, Syvanen AC. Multiple displacement amplification to create a long-lasting source of DNA for genetic studies. Hum Mutat 2006: 27: 603-14.
10. Martin MP, Gao X, Lee JH et al. Epistatic interaction between KIR3DS1 and HLA-B delays the progression to AIDS. Nat Genet 2002: 31: 429-34.
11. Martin MP, Qi Y, Gao X et al. Innate partnership of HLA-B and KIR3DL1 subtypes against HIV-1. Nat Genet 2007: 39: 733-40.
12. Naicker DD, Werner L, Kormuth E et al. Interleukin-10 promoter polymorphisms influence HIV-1 susceptibility and primary HIV-1 pathogenesis. J Infect Dis 2009: 200: 448-52.
13. Shin HD, Winkler C, Stephens JC et al. Genetic restriction of HIV-1 pathogenesis to AIDS by promoter alleles of IL10. Proc Natl Acad Sci U S A 2000: 97: 14467-72.
14. Martin MP, Carrington M. KIR locus polymorphisms: genotyping and disease association analysis. Methods Mol Biol 2008: 415: 49-64.
15. Wilcoxon F. Individual comparisons of grouped data by ranking methods. J Econ Entomol 1946: 39: 269.
16. Holm S. A simple sequentially rejective Bonferroni test procedure. Scand J Stat 1979: 6: 65-70.
17. Riemann K, Adamzik M, Frauenrath S et al. Comparison of manual and automated nucleic acid extraction from whole-blood samples. J Clin Lab Anal 2007: 21: 244-8.
18. Hollegaard MV, Grove J, Thorsen P, Norgaard-Pedersen B, Hougaard DM. High-throughput genotyping on archived dried blood spot samples. Genet Test Mol Biomarkers 2009: 13: 173-9.
19. Kong WJ, Wang Y, Wang Q, Han YC, Hu YJ. Comparison of three methods for isolation of nucleic acids from membranate inner ear tissue of rats. Chin Med J (Engl) 2006: 119: 986-90.
20. Pachot A, Barbalat V, Marotte H et al. A rapid semi automated method for DNA extraction from dried-blood spots: application to the HLA-DR shared epitope analysis in rheumatoid arthritis. J Immunol Methods 2007: 328: 220-5.
21. Norman PJ, Parham P. Complex interactions: the immunogenetics of human leukocyte antigen and killer cell immunoglobulin-like receptors. Semin Hematol 2005: 42: 65-75.
22. Ashouri E, Farjadian S, Reed EF, Ghaderi A, Rajalingam R. KIR gene content diversity in four Iranian populations. Immunogenetics 2009: 61: 483-92.
23. Kulkarni S, Savan R, Qi Y et al. Differential microRNA regulation of HLA-C expression and its association with HIV control. Nature 2011: 472: 495-8.
24. Shao W, Tang J, Dorak MT et al. Molecular typing of human leukocyte antigen and related polymorphisms following whole genome amplification. Tissue Antigens 2004: 64: 286-92.